Wall clock time and date at job start Sat Apr 11 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00011 * 2 1 4 4 H 1.48506 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47518 * 299.99628 * 3 2 1 6 6 H 1.48504 * 109.47595 * 59.99758 * 3 2 1 7 7 C 1.38812 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99747 * 155.25962 * 7 2 1 9 9 N 1.36940 * 120.00231 * 335.26919 * 7 2 1 10 10 C 1.44349 * 116.41982 * 333.90829 * 9 7 2 11 11 C 1.51884 * 113.47604 * 187.48125 * 10 9 7 12 12 C 1.52902 * 111.49676 * 321.32231 * 11 10 9 13 13 H 1.08998 * 112.47725 * 293.13910 * 12 11 10 14 14 C 1.55408 * 106.56844 * 169.08672 * 12 11 10 15 15 N 1.47378 * 106.74324 * 270.28657 * 14 12 11 16 16 C 1.34777 * 125.74394 * 179.06274 * 15 14 12 17 17 O 1.21592 * 119.99763 * 357.00145 * 16 15 14 18 18 C 1.47606 * 120.00349 * 177.00777 * 16 15 14 19 19 C 1.38558 * 119.74589 * 208.36296 * 18 16 15 20 20 N 1.33770 * 122.06034 * 179.97438 * 19 18 16 21 21 H 0.96999 * 119.62552 * 180.02562 * 20 19 18 22 22 C 1.37217 * 120.74086 * 359.97438 * 20 19 18 23 23 N 1.32003 * 134.47867 * 179.97438 * 22 20 19 24 24 C 1.33410 * 110.93390 * 180.02562 * 23 22 20 25 25 C 1.35784 * 110.89410 * 0.02562 * 24 23 22 26 26 C 1.41386 * 106.45020 * 0.02562 * 25 24 23 27 27 C 1.38759 * 135.64887 * 180.31201 * 26 25 24 28 28 C 1.47934 * 108.51427 * 359.32583 * 15 14 12 29 29 C 1.54104 * 110.27014 * 59.78024 * 12 11 10 30 30 H 1.09004 * 109.18747 * 187.76178 * 29 12 11 31 31 C 1.43971 * 116.42720 * 153.88334 * 9 7 2 32 32 H 0.97000 * 119.99739 * 0.02562 * 1 2 3 33 33 H 1.09005 * 108.77717 * 308.92382 * 10 9 7 34 34 H 1.08994 * 108.78105 * 67.22225 * 10 9 7 35 35 H 1.08997 * 109.75805 * 200.38948 * 11 10 9 36 36 H 1.09003 * 108.49308 * 81.42067 * 11 10 9 37 37 H 1.09008 * 110.00329 * 150.96597 * 14 12 11 38 38 H 1.09003 * 110.00480 * 29.60879 * 14 12 11 39 39 H 1.08005 * 118.96717 * 359.97438 * 19 18 16 40 40 H 1.07994 * 124.55277 * 179.97438 * 24 23 22 41 41 H 1.07997 * 126.77751 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.73636 * 359.90008 * 27 26 25 43 43 H 1.08997 * 110.56845 * 93.88507 * 28 15 14 44 44 H 1.09006 * 110.56202 * 216.73342 * 28 15 14 45 45 H 1.09008 * 108.11416 * 61.10196 * 31 9 7 46 46 H 1.09001 * 108.11998 * 304.64787 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0160 -1.2452 -0.3909 9 7 1.4198 -2.3335 0.4972 10 6 0.3895 -2.1378 1.4891 11 6 -0.0926 -3.4306 2.1239 12 6 -0.1812 -4.5601 1.0971 13 1 -0.9557 -4.3847 0.3504 14 6 -0.4056 -5.8719 1.8995 15 7 0.9294 -6.4135 2.2098 16 6 1.1798 -7.5367 2.9113 17 8 0.2608 -8.1687 3.3954 18 6 2.5697 -7.9997 3.0919 19 6 2.8282 -9.3508 3.2581 20 7 4.0693 -9.8210 3.4249 21 1 4.2098 -10.7742 3.5377 22 6 5.1459 -8.9704 3.4370 23 7 6.4488 -9.1295 3.5773 24 6 7.0818 -7.9568 3.5140 25 6 6.2012 -6.9408 3.3242 26 6 4.9171 -7.5297 3.2654 27 6 3.6207 -7.0675 3.0894 28 6 1.9486 -5.5133 1.6271 29 6 1.2015 -4.8192 0.4678 30 1 1.0939 -5.5265 -0.3546 31 6 1.8945 -3.5873 -0.0278 32 1 -0.4850 0.8401 -0.0004 33 1 0.7744 -1.4819 2.2700 34 1 -0.4656 -1.6550 1.0162 35 1 -1.0752 -3.2779 2.5702 36 1 0.6114 -3.7153 2.9059 37 1 -0.9670 -6.5861 1.2969 38 1 -0.9446 -5.6570 2.8222 39 1 2.0016 -10.0460 3.2528 40 1 8.1508 -7.8322 3.6027 41 1 6.4352 -5.8902 3.2364 42 1 3.4236 -6.0141 2.9558 43 1 2.2803 -4.7824 2.3645 44 1 2.7943 -6.0871 1.2480 45 1 2.9544 -3.6753 0.2114 46 1 1.7991 -3.5582 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088002979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:24 Heat of formation + Delta-G solvation = 97.030316 kcal Electronic energy + Delta-G solvation = -29678.569996 eV Core-core repulsion = 25763.583864 eV Total energy + Delta-G solvation = -3914.986132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79035 -40.45938 -38.80663 -37.93382 -35.77543 -34.42201 -32.57732 -31.61007 -30.42021 -29.84352 -29.06484 -28.03056 -25.84552 -24.48423 -24.23733 -22.96616 -22.19076 -21.74932 -21.20637 -19.40299 -18.43499 -17.83259 -17.46911 -17.21828 -16.78900 -16.29289 -15.86209 -15.51458 -15.31871 -14.98786 -14.80290 -14.39567 -13.96460 -13.74904 -13.52876 -13.22077 -13.20684 -12.98652 -12.74960 -12.63555 -12.40382 -12.31799 -11.93031 -11.85864 -11.36829 -11.14983 -11.01306 -10.80453 -10.55595 -10.31824 -10.25366 -10.17844 -9.80561 -9.73027 -9.66813 -9.62751 -8.76917 -8.51752 -8.36465 -7.98777 -6.67491 -5.66850 -3.30500 -0.06596 0.76503 1.96103 2.61548 2.83501 3.25042 3.32191 3.35378 3.44577 3.47086 3.90172 4.11923 4.21981 4.45261 4.45565 4.61368 4.71107 4.87380 4.94442 5.01744 5.24290 5.32337 5.33768 5.43819 5.44776 5.54311 5.56660 5.68154 5.75799 5.77347 5.80834 5.95757 6.04429 6.07277 6.11965 6.26476 6.29190 6.45887 6.49680 6.58898 6.60478 6.71921 6.79110 6.91542 7.25636 7.37497 7.78387 7.85401 7.88422 7.95462 8.48490 9.24690 9.94211 10.23054 11.19575 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003132 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.673939 B = 8937.808948 C =10631.508916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.006 3.994 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.269 4.269 8 H 0.067 0.933 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.123 4.123 12 C -0.081 4.081 13 H 0.100 0.900 14 C 0.110 3.890 15 N -0.607 5.607 16 C 0.589 3.411 17 O -0.548 6.548 18 C -0.230 4.230 19 C 0.203 3.797 20 N -0.490 5.490 21 H 0.428 0.572 22 C 0.241 3.759 23 N -0.530 5.530 24 C 0.051 3.949 25 C -0.218 4.218 26 C -0.167 4.167 27 C 0.049 3.951 28 C 0.096 3.904 29 C -0.097 4.097 30 H 0.076 0.924 31 C 0.175 3.825 32 H 0.252 0.748 33 H 0.020 0.980 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.189 0.811 40 H 0.160 0.840 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.015 0.985 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 -18.079 5.473 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.031 3.969 11 C -0.161 4.161 12 C -0.100 4.100 13 H 0.119 0.881 14 C -0.011 4.011 15 N -0.339 5.339 16 C 0.378 3.622 17 O -0.427 6.427 18 C -0.240 4.240 19 C 0.058 3.942 20 N -0.082 5.082 21 H 0.266 0.734 22 C -0.008 4.008 23 N -0.250 5.250 24 C -0.092 4.092 25 C -0.240 4.240 26 C -0.175 4.175 27 C 0.025 3.975 28 C -0.026 4.026 29 C -0.117 4.117 30 H 0.095 0.905 31 C 0.049 3.951 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.206 0.794 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.172 0.828 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.033 0.967 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.730 -19.288 5.954 20.528 hybrid contribution 0.206 1.363 -0.034 1.379 sum 3.936 -17.925 5.919 19.283 Atomic orbital electron populations 1.70013 1.05481 1.25297 1.52473 1.24943 0.94971 0.98514 1.00918 0.86311 0.79721 0.84014 0.77266 1.20175 1.21819 1.21534 1.19160 0.96227 0.86509 1.37940 0.91528 1.42675 1.43630 1.00854 1.43834 1.20270 0.94322 0.91816 0.90477 1.21742 1.00571 0.96680 0.97126 1.22084 0.97476 0.92977 0.97472 0.88139 1.22481 0.83421 0.95368 0.99873 1.48516 1.09210 1.23431 1.52782 1.17230 0.87190 0.79821 0.77998 1.90796 1.45874 1.56386 1.49640 1.19152 0.94574 0.92555 1.17698 1.22081 0.85597 0.96529 0.89955 1.40254 1.03796 1.11578 1.52604 0.73436 1.20494 0.88792 0.87817 1.03725 1.69523 1.01088 1.29464 1.24911 1.22351 0.99221 0.87414 1.00186 1.21495 0.90751 1.00192 1.11573 1.20120 0.94345 0.92806 1.10200 1.22093 0.90236 1.00885 0.84242 1.22967 0.91477 0.92101 0.96055 1.21671 0.95355 0.98289 0.96363 0.90536 1.19250 0.95267 0.84427 0.96193 0.93731 0.96216 0.90269 0.92086 0.93551 0.91505 0.90962 0.79377 0.82233 0.84006 0.82767 0.90011 0.90175 0.96735 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 10.87 55.49 0.60 -24.01 16 2 C 0.01 0.17 4.93 -17.43 -0.09 0.08 16 3 Si 0.90 21.03 29.62 -169.99 -5.03 16.00 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.27 -7.03 9.28 -15.06 -0.14 -7.17 16 8 H 0.07 1.73 7.94 -52.49 -0.42 1.32 16 9 N -0.59 -13.55 3.23 -179.51 -0.58 -14.13 16 10 C 0.16 3.46 5.07 -5.76 -0.03 3.43 16 11 C -0.12 -2.07 4.83 -27.35 -0.13 -2.20 16 12 C -0.08 -1.19 3.60 -88.82 -0.32 -1.51 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 14 C 0.11 1.43 6.25 -2.28 -0.01 1.42 16 15 N -0.61 -7.70 3.34 -170.64 -0.57 -8.27 16 16 C 0.59 7.45 7.61 -12.44 -0.09 7.36 16 17 O -0.55 -8.23 16.93 5.28 0.09 -8.14 16 18 C -0.23 -2.39 5.68 -105.11 -0.60 -2.99 16 19 C 0.20 1.51 10.66 -16.59 -0.18 1.33 16 20 N -0.49 -3.67 5.27 -10.38 -0.05 -3.73 16 21 H 0.43 1.73 8.91 -40.82 -0.36 1.36 16 22 C 0.24 2.85 8.64 -153.91 -1.33 1.52 16 23 N -0.53 -7.17 11.16 -11.09 -0.12 -7.29 16 24 C 0.05 0.64 11.69 -17.75 -0.21 0.43 16 25 C -0.22 -2.70 10.99 -39.26 -0.43 -3.13 16 26 C -0.17 -2.06 6.41 -105.01 -0.67 -2.74 16 27 C 0.05 0.54 8.02 -38.54 -0.31 0.23 16 28 C 0.10 1.20 3.77 -2.52 -0.01 1.19 16 29 C -0.10 -1.42 2.85 -90.90 -0.26 -1.68 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 C 0.18 3.30 5.75 -6.98 -0.04 3.26 16 32 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.08 2.02 5.80 -51.93 -0.30 1.72 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.75 6.68 -51.93 -0.35 0.41 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 39 H 0.19 0.83 7.80 -52.48 -0.41 0.43 16 40 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.16 1.65 4.69 -52.49 -0.25 1.40 16 43 H 0.08 1.09 6.35 -51.93 -0.33 0.76 16 44 H 0.08 0.89 6.26 -51.93 -0.32 0.57 16 45 H 0.01 0.27 7.81 -51.92 -0.41 -0.13 16 46 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -33.24 361.00 -11.14 -44.39 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.06 Total: 0.93 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.85 Total: -1.18 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.73 Total: -57.43 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.24 -11.14 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088002979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.416 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds