Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00011 * 2 1 4 4 H 1.48506 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47518 * 299.99628 * 3 2 1 6 6 H 1.48504 * 109.47595 * 59.99758 * 3 2 1 7 7 C 1.38812 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99747 * 155.25962 * 7 2 1 9 9 N 1.36940 * 120.00231 * 335.26919 * 7 2 1 10 10 C 1.44349 * 116.41982 * 333.90829 * 9 7 2 11 11 C 1.51884 * 113.47604 * 187.48125 * 10 9 7 12 12 C 1.52902 * 111.49676 * 321.32231 * 11 10 9 13 13 H 1.08998 * 112.47725 * 293.13910 * 12 11 10 14 14 C 1.55408 * 106.56844 * 169.08672 * 12 11 10 15 15 N 1.47378 * 106.74324 * 270.28657 * 14 12 11 16 16 C 1.34777 * 125.74394 * 179.06274 * 15 14 12 17 17 O 1.21592 * 119.99763 * 357.00145 * 16 15 14 18 18 C 1.47606 * 120.00349 * 177.00777 * 16 15 14 19 19 C 1.38558 * 119.74589 * 208.36296 * 18 16 15 20 20 N 1.33770 * 122.06034 * 179.97438 * 19 18 16 21 21 H 0.96999 * 119.62552 * 180.02562 * 20 19 18 22 22 C 1.37217 * 120.74086 * 359.97438 * 20 19 18 23 23 N 1.32003 * 134.47867 * 179.97438 * 22 20 19 24 24 C 1.33410 * 110.93390 * 180.02562 * 23 22 20 25 25 C 1.35784 * 110.89410 * 0.02562 * 24 23 22 26 26 C 1.41386 * 106.45020 * 0.02562 * 25 24 23 27 27 C 1.38759 * 135.64887 * 180.31201 * 26 25 24 28 28 C 1.47934 * 108.51427 * 359.32583 * 15 14 12 29 29 C 1.54104 * 110.27014 * 59.78024 * 12 11 10 30 30 H 1.09004 * 109.18747 * 187.76178 * 29 12 11 31 31 C 1.43971 * 116.42720 * 153.88334 * 9 7 2 32 32 H 0.97000 * 119.99739 * 0.02562 * 1 2 3 33 33 H 1.09005 * 108.77717 * 308.92382 * 10 9 7 34 34 H 1.08994 * 108.78105 * 67.22225 * 10 9 7 35 35 H 1.08997 * 109.75805 * 200.38948 * 11 10 9 36 36 H 1.09003 * 108.49308 * 81.42067 * 11 10 9 37 37 H 1.09008 * 110.00329 * 150.96597 * 14 12 11 38 38 H 1.09003 * 110.00480 * 29.60879 * 14 12 11 39 39 H 1.08005 * 118.96717 * 359.97438 * 19 18 16 40 40 H 1.07994 * 124.55277 * 179.97438 * 24 23 22 41 41 H 1.07997 * 126.77751 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.73636 * 359.90008 * 27 26 25 43 43 H 1.08997 * 110.56845 * 93.88507 * 28 15 14 44 44 H 1.09006 * 110.56202 * 216.73342 * 28 15 14 45 45 H 1.09008 * 108.11416 * 61.10196 * 31 9 7 46 46 H 1.09001 * 108.11998 * 304.64787 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0160 -1.2452 -0.3909 9 7 1.4198 -2.3335 0.4972 10 6 0.3895 -2.1378 1.4891 11 6 -0.0926 -3.4306 2.1239 12 6 -0.1812 -4.5601 1.0971 13 1 -0.9557 -4.3847 0.3504 14 6 -0.4056 -5.8719 1.8995 15 7 0.9294 -6.4135 2.2098 16 6 1.1798 -7.5367 2.9113 17 8 0.2608 -8.1687 3.3954 18 6 2.5697 -7.9997 3.0919 19 6 2.8282 -9.3508 3.2581 20 7 4.0693 -9.8210 3.4249 21 1 4.2098 -10.7742 3.5377 22 6 5.1459 -8.9704 3.4370 23 7 6.4488 -9.1295 3.5773 24 6 7.0818 -7.9568 3.5140 25 6 6.2012 -6.9408 3.3242 26 6 4.9171 -7.5297 3.2654 27 6 3.6207 -7.0675 3.0894 28 6 1.9486 -5.5133 1.6271 29 6 1.2015 -4.8192 0.4678 30 1 1.0939 -5.5265 -0.3546 31 6 1.8945 -3.5873 -0.0278 32 1 -0.4850 0.8401 -0.0004 33 1 0.7744 -1.4819 2.2700 34 1 -0.4656 -1.6550 1.0162 35 1 -1.0752 -3.2779 2.5702 36 1 0.6114 -3.7153 2.9059 37 1 -0.9670 -6.5861 1.2969 38 1 -0.9446 -5.6570 2.8222 39 1 2.0016 -10.0460 3.2528 40 1 8.1508 -7.8322 3.6027 41 1 6.4352 -5.8902 3.2364 42 1 3.4236 -6.0141 2.9558 43 1 2.2803 -4.7824 2.3645 44 1 2.7943 -6.0871 1.2480 45 1 2.9544 -3.6753 0.2114 46 1 1.7991 -3.5582 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088002979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = 76.708565 kcal Electronic energy + Delta-G solvation = -29679.451213 eV Core-core repulsion = 25763.583864 eV Total energy + Delta-G solvation = -3915.867349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.61029 -41.53950 -39.89322 -38.84097 -37.29245 -35.33932 -34.07469 -33.05758 -31.96694 -30.75891 -29.94531 -29.26017 -27.28133 -25.69520 -25.24102 -24.23147 -23.54002 -22.90541 -22.19290 -20.35865 -19.50855 -19.12574 -18.83528 -18.24782 -17.62972 -17.33889 -16.91212 -16.85852 -16.40089 -16.20422 -15.84979 -15.76100 -15.48945 -15.22575 -14.77459 -14.63931 -14.22022 -14.09116 -13.76141 -13.73197 -13.46587 -13.41739 -13.26904 -12.96049 -12.86453 -12.76115 -12.52947 -12.16056 -12.03335 -11.92824 -11.69095 -11.41883 -11.29289 -11.19238 -11.11204 -10.57983 -10.49050 -9.78997 -9.20120 -8.86369 -8.63982 -7.66175 -5.34773 -0.83086 -0.02155 1.26492 1.46332 1.50561 1.59866 1.68312 1.87824 2.35875 2.47222 2.53519 3.15503 3.21440 3.24659 3.43565 3.55061 3.64291 3.69635 3.78149 3.84929 4.04897 4.15193 4.20255 4.29965 4.46434 4.49224 4.55994 4.65028 4.66785 4.73006 4.79653 4.88263 4.92407 4.97028 5.02813 5.06883 5.10230 5.23191 5.27197 5.31141 5.34826 5.47019 5.62457 5.73308 5.79304 5.99297 6.09538 6.38111 6.47422 6.97875 7.00090 7.25259 8.09555 8.26240 9.14963 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003132 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.673939 B = 8937.808948 C =10631.508916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.042 4.042 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.280 4.280 8 H 0.064 0.936 9 N -0.596 5.596 10 C 0.164 3.836 11 C -0.112 4.112 12 C -0.078 4.078 13 H 0.097 0.903 14 C 0.120 3.880 15 N -0.608 5.608 16 C 0.595 3.405 17 O -0.570 6.570 18 C -0.248 4.248 19 C 0.240 3.760 20 N -0.470 5.470 21 H 0.447 0.553 22 C 0.227 3.773 23 N -0.555 5.555 24 C 0.029 3.971 25 C -0.230 4.230 26 C -0.197 4.197 27 C 0.059 3.941 28 C 0.107 3.893 29 C -0.095 4.095 30 H 0.098 0.902 31 C 0.173 3.827 32 H 0.249 0.751 33 H -0.012 1.012 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.229 0.771 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.022 0.978 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -20.596 5.822 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.240 4.240 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.411 4.411 8 H 0.082 0.918 9 N -0.320 5.320 10 C 0.039 3.961 11 C -0.150 4.150 12 C -0.097 4.097 13 H 0.115 0.885 14 C -0.002 4.002 15 N -0.339 5.339 16 C 0.385 3.615 17 O -0.451 6.451 18 C -0.257 4.257 19 C 0.093 3.907 20 N -0.064 5.064 21 H 0.289 0.711 22 C -0.022 4.022 23 N -0.275 5.275 24 C -0.114 4.114 25 C -0.252 4.252 26 C -0.205 4.205 27 C 0.035 3.965 28 C -0.015 4.015 29 C -0.114 4.114 30 H 0.116 0.884 31 C 0.047 3.953 32 H 0.058 0.942 33 H 0.007 0.993 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.172 0.828 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.040 0.960 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 3.616 -21.847 6.301 23.024 hybrid contribution 0.200 2.109 -0.160 2.125 sum 3.816 -19.738 6.141 21.021 Atomic orbital electron populations 1.70168 1.06587 1.25507 1.53841 1.25613 0.95675 1.01195 1.01472 0.85410 0.78976 0.80555 0.76732 1.19310 1.21937 1.21871 1.19461 0.96330 0.87999 1.37300 0.91819 1.42902 1.43451 1.01724 1.43965 1.20009 0.92673 0.94106 0.89333 1.21594 1.01111 0.94763 0.97515 1.21998 0.97528 0.93158 0.97041 0.88480 1.22338 0.83778 0.94394 0.99714 1.48503 1.08951 1.23572 1.52919 1.17377 0.87639 0.79252 0.77211 1.90794 1.46748 1.56993 1.50548 1.19036 0.93149 0.93758 1.19787 1.22632 0.86109 0.96161 0.85799 1.40322 1.02863 1.12260 1.50952 0.71135 1.20635 0.89090 0.88438 1.04025 1.69474 1.02091 1.30006 1.25890 1.22655 1.00166 0.87432 1.01140 1.21698 0.91230 1.00608 1.11692 1.20231 0.94677 0.93430 1.12128 1.22088 0.89982 1.01095 0.83290 1.22829 0.91643 0.92046 0.94965 1.21567 0.95175 0.96729 0.97946 0.88418 1.19336 0.96034 0.84537 0.95365 0.94171 0.99346 0.93684 0.90849 0.92762 0.90017 0.90944 0.75432 0.80805 0.83393 0.82812 0.90774 0.88332 0.95976 0.97119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 10.87 21.65 0.24 -52.03 16 2 C -0.04 -2.31 4.93 84.86 0.42 -1.89 16 3 Si 0.95 44.04 29.62 68.60 2.03 46.07 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.28 -14.95 9.28 84.03 0.78 -14.17 16 8 H 0.06 3.36 7.94 -2.91 -0.02 3.33 16 9 N -0.60 -28.01 3.23 -721.83 -2.33 -30.34 16 10 C 0.16 7.46 5.07 86.41 0.44 7.90 16 11 C -0.11 -3.69 4.83 30.19 0.15 -3.54 16 12 C -0.08 -2.16 3.60 -9.62 -0.03 -2.20 16 13 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 14 C 0.12 2.75 6.25 87.04 0.54 3.30 16 15 N -0.61 -13.56 3.34 -812.05 -2.71 -16.28 16 16 C 0.59 13.02 7.61 86.72 0.66 13.68 16 17 O -0.57 -15.08 16.93 -4.01 -0.07 -15.15 16 18 C -0.25 -4.33 5.68 -20.18 -0.11 -4.44 16 19 C 0.24 2.54 10.66 84.47 0.90 3.44 16 20 N -0.47 -5.44 5.27 -186.74 -0.98 -6.42 16 21 H 0.45 1.91 8.91 -92.71 -0.83 1.08 16 22 C 0.23 4.95 8.64 135.83 1.17 6.13 16 23 N -0.55 -14.55 11.16 -188.99 -2.11 -16.66 16 24 C 0.03 0.71 11.69 83.88 0.98 1.69 16 25 C -0.23 -5.64 10.99 22.48 0.25 -5.40 16 26 C -0.20 -4.62 6.41 -20.12 -0.13 -4.75 16 27 C 0.06 1.18 8.02 22.94 0.18 1.37 16 28 C 0.11 2.43 3.77 86.58 0.33 2.75 16 29 C -0.09 -2.59 2.85 -10.97 -0.03 -2.62 16 30 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 31 C 0.17 6.42 5.75 85.82 0.49 6.92 16 32 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 33 H -0.01 -0.59 8.09 -2.38 -0.02 -0.60 16 34 H 0.05 2.40 5.80 -2.39 -0.01 2.39 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.70 6.68 -2.39 -0.02 1.69 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.07 1.71 7.78 -2.39 -0.02 1.69 16 39 H 0.23 0.69 7.80 -2.91 -0.02 0.67 16 40 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.15 3.02 4.69 -2.91 -0.01 3.01 16 43 H 0.07 1.84 6.35 -2.39 -0.02 1.82 16 44 H 0.10 1.91 6.26 -2.38 -0.01 1.90 16 45 H 0.02 0.80 7.81 -2.38 -0.02 0.78 16 46 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 Total: -1.00 -73.91 361.00 1.25 -72.67 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.20 Total: 9.98 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.98 Total: 8.16 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -7.90 Total: -121.72 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.07 Total: -15.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.91 1.25 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088002979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.377 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds