Wall clock time and date at job start Sat Apr 11 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48503 * 109.46906 * 239.99825 * 3 2 1 5 5 H 1.48500 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47008 * 119.99986 * 3 2 1 7 7 C 1.38814 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99811 * 173.94389 * 7 2 1 9 9 N 1.36926 * 119.99827 * 353.94018 * 7 2 1 10 10 C 1.44342 * 116.43009 * 334.75910 * 9 7 2 11 11 C 1.51572 * 113.01687 * 188.02775 * 10 9 7 12 12 C 1.52911 * 111.66530 * 320.11583 * 11 10 9 13 13 H 1.09000 * 112.47679 * 293.93995 * 12 11 10 14 14 C 1.55413 * 106.57052 * 169.88524 * 12 11 10 15 15 N 1.47376 * 106.74265 * 271.00020 * 14 12 11 16 16 C 1.34776 * 125.74470 * 179.03084 * 15 14 12 17 17 O 1.21588 * 120.00403 * 185.84322 * 16 15 14 18 18 C 1.47582 * 119.99611 * 5.83459 * 16 15 14 19 19 C 1.40081 * 120.36077 * 352.63534 * 18 16 15 20 20 N 1.31167 * 121.12002 * 179.97438 * 19 18 16 21 21 C 1.33365 * 121.68032 * 359.95224 * 20 19 18 22 22 C 1.41844 * 133.17291 * 180.02562 * 21 20 19 23 23 C 1.34457 * 107.95904 * 180.28973 * 22 21 20 24 24 N 1.36536 * 109.71360 * 359.56572 * 23 22 21 25 25 H 0.97002 * 125.59961 * 180.15952 * 24 23 22 26 26 C 1.37854 * 108.80712 * 0.44067 * 24 23 22 27 27 C 1.38732 * 133.57236 * 179.73943 * 26 24 23 28 28 C 1.47937 * 108.51646 * 359.29232 * 15 14 12 29 29 C 1.54109 * 109.61874 * 60.86448 * 12 11 10 30 30 H 1.08996 * 109.18308 * 187.52714 * 29 12 11 31 31 C 1.43977 * 116.42554 * 154.73423 * 9 7 2 32 32 H 0.96996 * 120.00566 * 0.02562 * 1 2 3 33 33 H 1.09005 * 108.77498 * 67.11173 * 10 9 7 34 34 H 1.09006 * 108.68303 * 308.87335 * 10 9 7 35 35 H 1.09007 * 109.04363 * 199.55406 * 11 10 9 36 36 H 1.08999 * 108.98240 * 80.64508 * 11 10 9 37 37 H 1.08993 * 110.00586 * 151.67689 * 14 12 11 38 38 H 1.09004 * 110.04014 * 30.34285 * 14 12 11 39 39 H 1.07998 * 119.44096 * 359.97438 * 19 18 16 40 40 H 1.08002 * 126.02183 * 0.02562 * 22 21 20 41 41 H 1.08004 * 125.14192 * 179.74010 * 23 22 21 42 42 H 1.07998 * 120.90556 * 0.02562 * 27 26 24 43 43 H 1.09004 * 110.56741 * 93.91715 * 28 15 14 44 44 H 1.09002 * 110.56192 * 216.77310 * 28 15 14 45 45 H 1.09000 * 108.11729 * 304.65333 * 31 9 7 46 46 H 1.09002 * 108.11429 * 61.31209 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0857 -1.2046 -0.0992 9 7 1.3314 -2.3847 0.1241 10 6 0.0536 -2.3246 0.7927 11 6 -0.5402 -3.6932 1.0604 12 6 -0.3153 -4.6458 -0.1144 13 1 -0.8540 -4.3371 -1.0102 14 6 -0.7276 -6.0612 0.3775 15 7 0.4744 -6.6701 0.9744 16 6 0.5406 -7.8926 1.5380 17 8 1.5603 -8.2511 2.0947 18 6 -0.6249 -8.7961 1.4794 19 6 -1.8507 -8.3390 0.9786 20 7 -2.8958 -9.1293 0.9193 21 6 -2.8396 -10.3970 1.3297 22 6 -3.7941 -11.4452 1.3766 23 6 -3.1934 -12.5300 1.8963 24 7 -1.8896 -12.2421 2.1819 25 1 -1.2454 -12.8592 2.5627 26 6 -1.6407 -10.9285 1.8460 27 6 -0.5172 -10.1182 1.9227 28 6 1.5947 -5.7112 0.8566 29 6 1.1967 -4.8315 -0.3479 30 1 1.3502 -5.4011 -1.2644 31 6 1.9704 -3.5515 -0.4266 32 1 -0.4851 0.8400 -0.0004 33 1 -0.6402 -1.7563 0.1731 34 1 0.1806 -1.8054 1.7427 35 1 -1.6113 -3.5886 1.2334 36 1 -0.0755 -4.1129 1.9526 37 1 -1.0717 -6.6627 -0.4638 38 1 -1.5162 -5.9816 1.1258 39 1 -1.9366 -7.3186 0.6355 40 1 -4.8234 -11.3818 1.0556 41 1 -3.6694 -13.4855 2.0603 42 1 0.4151 -10.4983 2.3133 43 1 1.6804 -5.1094 1.7615 44 1 2.5284 -6.2361 0.6549 45 1 2.1923 -3.3533 -1.4752 46 1 2.9160 -3.6982 0.0954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088008433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:27 Heat of formation + Delta-G solvation = 99.846763 kcal Electronic energy + Delta-G solvation = -29304.753689 eV Core-core repulsion = 25389.889687 eV Total energy + Delta-G solvation = -3914.864002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06559 -40.53742 -38.63128 -37.60631 -35.74962 -33.18562 -32.71406 -31.58781 -30.64252 -30.42788 -29.51040 -27.96339 -25.83565 -24.34394 -23.89900 -22.99015 -21.98977 -21.54094 -21.17323 -19.84467 -18.74344 -17.89379 -17.37850 -17.10957 -16.41125 -15.86455 -15.78101 -15.30375 -15.15159 -14.94093 -14.46188 -14.18115 -13.96555 -13.68089 -13.59820 -13.28561 -13.11449 -13.03839 -12.88172 -12.78586 -12.65905 -12.37238 -12.15124 -11.50904 -11.21738 -10.91737 -10.75698 -10.62162 -10.48996 -10.27493 -10.20908 -10.17524 -9.67162 -9.63650 -9.51031 -9.42371 -8.77888 -8.66235 -8.48043 -8.40232 -6.65262 -5.49313 -3.23128 0.34021 1.04382 2.13065 2.50763 2.92857 2.99959 3.40436 3.45348 3.46567 3.76523 3.98415 4.27930 4.44004 4.50297 4.58617 4.70904 4.76585 4.79944 4.89969 5.05506 5.08084 5.27500 5.34798 5.43238 5.45226 5.59887 5.60827 5.65874 5.76662 5.85331 5.99439 6.00865 6.02555 6.08944 6.13544 6.23879 6.45584 6.55780 6.57632 6.60434 6.74214 6.84220 6.87679 6.95123 7.50181 7.52532 7.78108 7.83920 8.10754 8.11634 8.60943 9.37148 10.05217 10.30533 11.30251 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031957 B = 0.002303 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.978217 B =12156.631400 C =12749.364958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.002 3.998 3 Si 0.909 3.091 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.163 3.837 11 C -0.130 4.130 12 C -0.080 4.080 13 H 0.102 0.898 14 C 0.083 3.917 15 N -0.608 5.608 16 C 0.580 3.420 17 O -0.544 6.544 18 C -0.172 4.172 19 C 0.095 3.905 20 N -0.454 5.454 21 C 0.111 3.889 22 C -0.199 4.199 23 C 0.078 3.922 24 N -0.582 5.582 25 H 0.422 0.578 26 C 0.022 3.978 27 C -0.015 4.015 28 C 0.117 3.883 29 C -0.098 4.098 30 H 0.074 0.926 31 C 0.178 3.822 32 H 0.251 0.749 33 H 0.097 0.903 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.195 0.805 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.144 0.856 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.024 0.976 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -24.330 2.271 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.739 3.261 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.038 3.962 11 C -0.169 4.169 12 C -0.099 4.099 13 H 0.120 0.880 14 C -0.039 4.039 15 N -0.340 5.340 16 C 0.369 3.631 17 O -0.423 6.423 18 C -0.179 4.179 19 C -0.074 4.074 20 N -0.161 5.161 21 C -0.020 4.020 22 C -0.225 4.225 23 C -0.053 4.053 24 N -0.185 5.185 25 H 0.260 0.740 26 C -0.086 4.086 27 C -0.044 4.044 28 C -0.004 4.004 29 C -0.117 4.117 30 H 0.093 0.907 31 C 0.052 3.948 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.211 0.789 40 H 0.172 0.828 41 H 0.198 0.802 42 H 0.161 0.839 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.041 0.959 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.404 -24.362 2.348 25.570 hybrid contribution 1.520 0.120 0.654 1.659 sum -5.883 -24.242 3.001 25.125 Atomic orbital electron populations 1.69861 1.05032 1.24636 1.55885 1.25130 0.95476 0.98207 1.00708 0.86262 0.78667 0.83157 0.78016 1.20936 1.21619 1.21161 1.19220 0.90772 0.84029 1.44723 0.91591 1.42710 1.20429 1.03422 1.65435 1.20606 0.88085 0.90421 0.97049 1.21848 1.00554 0.98410 0.96053 1.22123 0.95733 0.92007 0.99994 0.87961 1.23075 0.87785 0.95468 0.97587 1.48518 1.12899 1.14860 1.57765 1.17505 0.86961 0.80245 0.78394 1.90772 1.32322 1.75180 1.44035 1.20562 0.96189 0.94640 1.06466 1.24619 0.86805 1.01362 0.94573 1.67360 1.30463 1.02800 1.15515 1.19304 0.92398 0.91682 0.98586 1.20607 1.00448 0.91127 1.10303 1.22065 0.83267 1.00257 0.99704 1.41741 1.11514 1.09845 1.55383 0.74043 1.18999 0.97453 0.86417 1.05770 1.20506 0.96641 0.91418 0.95868 1.22484 0.89109 0.89553 0.99281 1.21650 0.95728 0.97191 0.97169 0.90712 1.19188 0.93734 0.85181 0.96741 0.93779 0.88560 0.96090 0.92252 0.93588 0.90463 0.89997 0.78898 0.82805 0.80208 0.83876 0.90488 0.90467 0.95863 0.96941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.42 9.94 55.49 0.55 -24.87 16 2 C 0.00 0.06 5.27 -17.43 -0.09 -0.04 16 3 Si 0.91 21.59 29.56 -169.99 -5.02 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.26 -6.94 9.40 -15.06 -0.14 -7.09 16 8 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 9 N -0.59 -14.41 3.25 -179.70 -0.58 -14.99 16 10 C 0.16 3.78 4.74 -5.91 -0.03 3.76 16 11 C -0.13 -2.31 4.78 -27.50 -0.13 -2.44 16 12 C -0.08 -1.20 3.65 -88.80 -0.32 -1.53 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.08 1.04 4.22 -2.28 -0.01 1.03 16 15 N -0.61 -8.84 3.34 -174.55 -0.58 -9.43 16 16 C 0.58 8.93 7.81 -12.45 -0.10 8.83 16 17 O -0.54 -9.90 16.74 5.29 0.09 -9.81 16 18 C -0.17 -2.30 5.89 -104.79 -0.62 -2.92 16 19 C 0.10 1.21 9.79 -17.14 -0.17 1.04 16 20 N -0.45 -6.10 10.40 -10.71 -0.11 -6.22 16 21 C 0.11 1.34 7.32 -84.80 -0.62 0.72 16 22 C -0.20 -1.73 10.84 -39.54 -0.43 -2.16 16 23 C 0.08 0.44 11.82 -16.79 -0.20 0.24 16 24 N -0.58 -3.87 6.14 -10.66 -0.07 -3.94 16 25 H 0.42 1.46 8.96 -40.82 -0.37 1.09 16 26 C 0.02 0.24 7.27 -83.95 -0.61 -0.37 16 27 C -0.02 -0.18 9.72 -38.79 -0.38 -0.56 16 28 C 0.12 1.84 5.66 -2.54 -0.01 1.83 16 29 C -0.10 -1.57 2.84 -90.92 -0.26 -1.83 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 C 0.18 3.58 5.75 -6.98 -0.04 3.54 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.10 2.52 5.69 -51.93 -0.30 2.23 16 34 H 0.02 0.54 8.02 -51.93 -0.42 0.13 16 35 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.05 0.82 6.60 -51.93 -0.34 0.48 16 37 H 0.08 0.83 6.76 -51.93 -0.35 0.48 16 38 H 0.08 0.95 6.41 -51.93 -0.33 0.62 16 39 H 0.20 2.18 2.72 -57.54 -0.16 2.02 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.18 0.24 8.06 -52.48 -0.42 -0.18 16 42 H 0.14 1.55 7.74 -52.49 -0.41 1.14 16 43 H 0.08 1.34 7.16 -51.93 -0.37 0.96 16 44 H 0.08 1.20 8.11 -51.93 -0.42 0.77 16 45 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 46 H 0.01 0.26 7.80 -51.93 -0.40 -0.14 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -33.45 358.24 -10.43 -43.88 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.95 Total: 1.34 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -4.16 Total: 2.07 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.79 Total: -59.45 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.45 -10.43 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088008433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.729 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds