Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47129 * 180.27456 * 3 2 1 5 5 H 1.48493 * 109.46794 * 300.27246 * 3 2 1 6 6 H 1.48493 * 109.47172 * 60.27159 * 3 2 1 7 7 C 1.38816 * 119.99556 * 180.26884 * 2 1 3 8 8 H 1.07998 * 119.99843 * 176.06531 * 7 2 1 9 9 N 1.36929 * 120.00208 * 356.07584 * 7 2 1 10 10 C 1.47232 * 121.39399 * 215.28836 * 9 7 2 11 11 C 1.52747 * 107.71270 * 238.33891 * 10 9 7 12 12 C 1.53085 * 110.93198 * 302.04534 * 11 10 9 13 13 H 1.09001 * 112.14505 * 287.59554 * 12 11 10 14 14 C 1.55408 * 106.23071 * 164.37064 * 12 11 10 15 15 N 1.48913 * 106.06740 * 268.58884 * 14 12 11 16 16 C 1.34779 * 125.45104 * 178.83516 * 15 14 12 17 17 O 1.21609 * 119.99952 * 185.41770 * 16 15 14 18 18 C 1.47376 * 120.00122 * 5.41277 * 16 15 14 19 19 C 1.39257 * 120.83314 * 352.92253 * 18 16 15 20 20 N 1.31919 * 120.96598 * 179.68101 * 19 18 16 21 21 C 1.31921 * 122.71590 * 0.63977 * 20 19 18 22 22 C 1.38691 * 120.79463 * 359.65720 * 21 20 19 23 23 N 1.37756 * 134.29980 * 180.02562 * 22 21 20 24 24 H 0.96999 * 125.55590 * 0.02562 * 23 22 21 25 25 C 1.36559 * 108.87607 * 179.97438 * 23 22 21 26 26 C 1.34640 * 109.66365 * 0.02562 * 25 23 22 27 27 C 1.40981 * 118.84622 * 0.02562 * 22 21 20 28 28 C 1.47855 * 108.90035 * 358.81696 * 15 14 12 29 29 C 1.53855 * 103.98875 * 336.66713 * 28 15 14 30 30 H 1.09004 * 109.15420 * 283.00975 * 29 28 15 31 31 C 1.46710 * 121.39535 * 35.00955 * 9 7 2 32 32 H 0.97002 * 119.99859 * 359.72931 * 1 2 3 33 33 H 1.09000 * 109.80863 * 357.88935 * 10 9 7 34 34 H 1.09002 * 109.81596 * 118.72182 * 10 9 7 35 35 H 1.09001 * 109.18209 * 62.41787 * 11 10 9 36 36 H 1.08995 * 109.18591 * 181.67200 * 11 10 9 37 37 H 1.09001 * 109.96818 * 28.13935 * 14 12 11 38 38 H 1.09007 * 109.96591 * 149.39604 * 14 12 11 39 39 H 1.07994 * 119.51634 * 359.97438 * 19 18 16 40 40 H 1.08001 * 119.59754 * 179.67369 * 21 20 19 41 41 H 1.08002 * 125.16697 * 179.97438 * 25 23 22 42 42 H 1.07995 * 126.09009 * 179.97438 * 26 25 23 43 43 H 1.08999 * 110.52390 * 218.04034 * 28 15 14 44 44 H 1.08996 * 110.64335 * 95.34811 * 28 15 14 45 45 H 1.08998 * 109.12475 * 248.30338 * 31 9 7 46 46 H 1.08996 * 109.12025 * 7.39239 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0067 5 1 1.8865 2.3992 -1.2091 6 1 1.8965 2.3935 1.2157 7 6 2.0102 -1.2022 -0.0056 8 1 3.0882 -1.2031 -0.0698 9 7 1.3279 -2.3870 0.0700 10 6 1.8761 -3.5426 0.7992 11 6 1.9887 -4.7036 -0.1869 12 6 0.6267 -5.0307 -0.8045 13 1 -0.0406 -5.5176 -0.0933 14 6 0.9153 -5.9155 -2.0491 15 7 1.0444 -4.9788 -3.1996 16 6 1.3189 -5.3346 -4.4703 17 8 1.4996 -4.4793 -5.3156 18 6 1.4000 -6.7602 -4.8352 19 6 1.3421 -7.7513 -3.8588 20 7 1.4083 -9.0283 -4.1830 21 6 1.5436 -9.4416 -5.4285 22 6 1.6168 -8.5333 -6.4740 23 7 1.7539 -8.6475 -7.8400 24 1 1.8280 -9.4804 -8.3317 25 6 1.7671 -7.3972 -8.3888 26 6 1.6430 -6.4742 -7.4164 27 6 1.5447 -7.1554 -6.1843 28 6 0.8223 -3.5979 -2.7202 29 6 -0.0082 -3.7785 -1.4377 30 1 -1.0409 -3.9989 -1.7084 31 6 0.0172 -2.5562 -0.5672 32 1 -0.4850 0.8401 0.0040 33 1 2.8618 -3.2964 1.1941 34 1 1.2082 -3.8144 1.6166 35 1 2.6861 -4.4336 -0.9800 36 1 2.3653 -5.5826 0.3361 37 1 1.8409 -6.4723 -1.9034 38 1 0.0878 -6.6053 -2.2154 39 1 1.2368 -7.4706 -2.8213 40 1 1.5977 -10.5000 -5.6365 41 1 1.8635 -7.1814 -9.4427 42 1 1.6225 -5.4033 -7.5546 43 1 0.2646 -3.0221 -3.4587 44 1 1.7716 -3.1118 -2.4954 45 1 -0.7448 -2.6586 0.2053 46 1 -0.2030 -1.6753 -1.1701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088027570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = 91.824728 kcal Electronic energy + Delta-G solvation = -29836.359644 eV Core-core repulsion = 25921.147780 eV Total energy + Delta-G solvation = -3915.211863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99350 -40.14632 -38.35500 -37.80061 -35.25313 -32.88851 -32.52703 -31.23835 -30.46586 -30.14074 -29.61191 -27.46469 -25.88561 -24.65696 -23.33135 -22.77694 -21.74549 -21.46122 -21.08029 -19.84324 -18.49023 -18.04036 -17.65242 -16.80156 -16.38096 -15.75731 -15.25617 -15.16090 -15.08339 -14.74131 -14.59697 -14.10222 -13.74324 -13.57969 -13.42279 -13.30920 -12.95325 -12.82572 -12.71669 -12.41007 -12.22220 -12.09709 -11.77258 -11.58369 -11.01425 -10.88959 -10.73424 -10.67575 -10.38096 -10.28504 -10.19776 -10.11877 -9.90636 -9.46937 -9.37685 -9.36322 -8.87089 -8.49845 -8.33905 -8.11777 -6.54438 -5.79028 -3.31220 0.35797 1.24192 2.48469 2.69931 3.01517 3.16256 3.38562 3.46482 3.47948 3.88422 4.20750 4.41014 4.49028 4.54473 4.67186 4.83245 4.83581 5.02174 5.10527 5.13785 5.22712 5.39817 5.43098 5.51365 5.53889 5.66719 5.70544 5.85498 5.92505 6.01343 6.14458 6.23441 6.25727 6.37172 6.39482 6.46206 6.47704 6.60108 6.65076 6.74913 6.86163 6.86958 7.01786 7.08741 7.33343 7.74415 7.77559 7.79625 7.80340 8.39055 8.51932 9.24492 9.82886 10.45493 11.27733 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.002877 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.640211 B = 9730.361128 C =10659.785307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.010 3.990 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.086 4.086 13 H 0.091 0.909 14 C 0.087 3.913 15 N -0.610 5.610 16 C 0.572 3.428 17 O -0.537 6.537 18 C -0.134 4.134 19 C 0.058 3.942 20 N -0.472 5.472 21 C 0.131 3.869 22 C 0.017 3.983 23 N -0.579 5.579 24 H 0.421 0.579 25 C 0.063 3.937 26 C -0.190 4.190 27 C -0.023 4.023 28 C 0.124 3.876 29 C -0.112 4.112 30 H 0.063 0.937 31 C 0.173 3.827 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.192 0.808 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.020 0.980 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -20.096 -12.304 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.035 4.035 15 N -0.344 5.344 16 C 0.361 3.639 17 O -0.415 6.415 18 C -0.140 4.140 19 C -0.092 4.092 20 N -0.181 5.181 21 C -0.036 4.036 22 C -0.093 4.093 23 N -0.182 5.182 24 H 0.258 0.742 25 C -0.067 4.067 26 C -0.214 4.214 27 C -0.035 4.035 28 C 0.003 3.997 29 C -0.133 4.133 30 H 0.082 0.918 31 C 0.047 3.953 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.208 0.792 40 H 0.172 0.828 41 H 0.195 0.805 42 H 0.177 0.823 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.038 0.962 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.039 -20.133 -12.188 23.558 hybrid contribution 0.466 0.966 -1.023 1.482 sum 1.505 -19.167 -13.212 23.328 Atomic orbital electron populations 1.69878 1.05322 1.25391 1.54201 1.25317 0.95539 0.98257 0.99737 0.86232 0.79442 0.83970 0.77265 1.20236 1.21635 1.21547 1.19131 0.90661 0.82885 1.45235 0.91823 1.43949 1.19835 1.09498 1.58014 1.20905 0.97509 0.87752 0.92258 1.22071 0.95487 0.99194 1.00246 1.22186 0.98155 0.95508 0.94624 0.89122 1.23227 1.00507 0.92857 0.86909 1.49024 1.69062 1.09823 1.06446 1.17547 0.77545 0.87592 0.81228 1.90751 1.50406 1.51794 1.48592 1.20442 1.06186 0.94612 0.92756 1.24417 0.95939 0.87118 1.01739 1.67714 1.13365 1.18425 1.18577 1.21953 0.96905 0.98586 0.86129 1.19343 1.08439 0.96202 0.85297 1.41745 1.63120 1.08525 1.04787 0.74167 1.22192 1.02330 0.82761 0.99383 1.20927 1.09954 1.00622 0.89906 1.18190 1.00028 0.92125 0.93169 1.22249 1.01225 0.81102 0.95089 1.22111 0.97595 0.97946 0.95646 0.91850 1.20126 0.87133 0.94039 0.94052 0.93542 0.92675 0.96041 0.92116 0.93094 0.90323 0.90859 0.79181 0.82814 0.80483 0.82291 0.91063 0.89838 0.96241 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 10.67 55.49 0.59 -24.82 16 2 C 0.01 0.28 5.33 -17.43 -0.09 0.18 16 3 Si 0.90 21.52 29.56 -169.99 -5.02 16.49 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.64 9.64 -15.06 -0.15 -6.78 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.59 -14.04 2.83 -174.36 -0.49 -14.53 16 10 C 0.14 2.80 6.52 -3.77 -0.02 2.78 16 11 C -0.13 -2.10 4.78 -26.82 -0.13 -2.23 16 12 C -0.09 -1.28 3.58 -88.77 -0.32 -1.60 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.09 1.16 4.25 -1.43 -0.01 1.16 16 15 N -0.61 -10.16 3.38 -173.34 -0.59 -10.75 16 16 C 0.57 10.13 7.81 -12.54 -0.10 10.04 16 17 O -0.54 -11.06 15.59 5.27 0.08 -10.98 16 18 C -0.13 -2.04 5.91 -104.63 -0.62 -2.66 16 19 C 0.06 0.78 9.84 -17.14 -0.17 0.61 16 20 N -0.47 -5.93 10.30 -12.85 -0.13 -6.06 16 21 C 0.13 1.35 11.21 -17.35 -0.19 1.16 16 22 C 0.02 0.19 7.31 -84.00 -0.61 -0.43 16 23 N -0.58 -4.27 6.13 -10.63 -0.07 -4.33 16 24 H 0.42 1.44 8.96 -40.82 -0.37 1.08 16 25 C 0.06 0.51 11.83 -16.72 -0.20 0.32 16 26 C -0.19 -2.37 10.10 -39.76 -0.40 -2.77 16 27 C -0.02 -0.33 6.03 -106.59 -0.64 -0.97 16 28 C 0.12 2.35 5.81 -2.85 -0.02 2.33 16 29 C -0.11 -2.02 2.82 -91.10 -0.26 -2.27 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 C 0.17 3.90 4.62 -5.38 -0.02 3.87 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.05 1.08 7.97 -51.93 -0.41 0.67 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.08 7.11 -51.93 -0.37 0.71 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.95 6.36 -51.93 -0.33 0.62 16 38 H 0.07 0.85 6.84 -51.93 -0.35 0.50 16 39 H 0.19 2.26 2.72 -57.05 -0.16 2.11 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.16 2.18 7.21 -52.49 -0.38 1.80 16 43 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 44 H 0.08 1.80 7.46 -51.93 -0.39 1.41 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.10 2.67 5.96 -51.93 -0.31 2.36 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -33.15 358.85 -10.16 -43.31 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.99 Total: 3.53 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -3.95 Total: 2.72 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.68 Total: -60.49 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.15 -10.16 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088027570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.135 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds