Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47129 * 180.27456 * 3 2 1 5 5 H 1.48493 * 109.46794 * 300.27246 * 3 2 1 6 6 H 1.48493 * 109.47172 * 60.27159 * 3 2 1 7 7 C 1.38816 * 119.99556 * 180.26884 * 2 1 3 8 8 H 1.07998 * 119.99843 * 176.06531 * 7 2 1 9 9 N 1.36929 * 120.00208 * 356.07584 * 7 2 1 10 10 C 1.47232 * 121.39399 * 215.28836 * 9 7 2 11 11 C 1.52747 * 107.71270 * 238.33891 * 10 9 7 12 12 C 1.53085 * 110.93198 * 302.04534 * 11 10 9 13 13 H 1.09001 * 112.14505 * 287.59554 * 12 11 10 14 14 C 1.55408 * 106.23071 * 164.37064 * 12 11 10 15 15 N 1.48913 * 106.06740 * 268.58884 * 14 12 11 16 16 C 1.34779 * 125.45104 * 178.83516 * 15 14 12 17 17 O 1.21609 * 119.99952 * 185.41770 * 16 15 14 18 18 C 1.47376 * 120.00122 * 5.41277 * 16 15 14 19 19 C 1.39257 * 120.83314 * 352.92253 * 18 16 15 20 20 N 1.31919 * 120.96598 * 179.68101 * 19 18 16 21 21 C 1.31921 * 122.71590 * 0.63977 * 20 19 18 22 22 C 1.38691 * 120.79463 * 359.65720 * 21 20 19 23 23 N 1.37756 * 134.29980 * 180.02562 * 22 21 20 24 24 H 0.96999 * 125.55590 * 0.02562 * 23 22 21 25 25 C 1.36559 * 108.87607 * 179.97438 * 23 22 21 26 26 C 1.34640 * 109.66365 * 0.02562 * 25 23 22 27 27 C 1.40981 * 118.84622 * 0.02562 * 22 21 20 28 28 C 1.47855 * 108.90035 * 358.81696 * 15 14 12 29 29 C 1.53855 * 103.98875 * 336.66713 * 28 15 14 30 30 H 1.09004 * 109.15420 * 283.00975 * 29 28 15 31 31 C 1.46710 * 121.39535 * 35.00955 * 9 7 2 32 32 H 0.97002 * 119.99859 * 359.72931 * 1 2 3 33 33 H 1.09000 * 109.80863 * 357.88935 * 10 9 7 34 34 H 1.09002 * 109.81596 * 118.72182 * 10 9 7 35 35 H 1.09001 * 109.18209 * 62.41787 * 11 10 9 36 36 H 1.08995 * 109.18591 * 181.67200 * 11 10 9 37 37 H 1.09001 * 109.96818 * 28.13935 * 14 12 11 38 38 H 1.09007 * 109.96591 * 149.39604 * 14 12 11 39 39 H 1.07994 * 119.51634 * 359.97438 * 19 18 16 40 40 H 1.08001 * 119.59754 * 179.67369 * 21 20 19 41 41 H 1.08002 * 125.16697 * 179.97438 * 25 23 22 42 42 H 1.07995 * 126.09009 * 179.97438 * 26 25 23 43 43 H 1.08999 * 110.52390 * 218.04034 * 28 15 14 44 44 H 1.08996 * 110.64335 * 95.34811 * 28 15 14 45 45 H 1.08998 * 109.12475 * 248.30338 * 31 9 7 46 46 H 1.08996 * 109.12025 * 7.39239 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0067 5 1 1.8865 2.3992 -1.2091 6 1 1.8965 2.3935 1.2157 7 6 2.0102 -1.2022 -0.0056 8 1 3.0882 -1.2031 -0.0698 9 7 1.3279 -2.3870 0.0700 10 6 1.8761 -3.5426 0.7992 11 6 1.9887 -4.7036 -0.1869 12 6 0.6267 -5.0307 -0.8045 13 1 -0.0406 -5.5176 -0.0933 14 6 0.9153 -5.9155 -2.0491 15 7 1.0444 -4.9788 -3.1996 16 6 1.3189 -5.3346 -4.4703 17 8 1.4996 -4.4793 -5.3156 18 6 1.4000 -6.7602 -4.8352 19 6 1.3421 -7.7513 -3.8588 20 7 1.4083 -9.0283 -4.1830 21 6 1.5436 -9.4416 -5.4285 22 6 1.6168 -8.5333 -6.4740 23 7 1.7539 -8.6475 -7.8400 24 1 1.8280 -9.4804 -8.3317 25 6 1.7671 -7.3972 -8.3888 26 6 1.6430 -6.4742 -7.4164 27 6 1.5447 -7.1554 -6.1843 28 6 0.8223 -3.5979 -2.7202 29 6 -0.0082 -3.7785 -1.4377 30 1 -1.0409 -3.9989 -1.7084 31 6 0.0172 -2.5562 -0.5672 32 1 -0.4850 0.8401 0.0040 33 1 2.8618 -3.2964 1.1941 34 1 1.2082 -3.8144 1.6166 35 1 2.6861 -4.4336 -0.9800 36 1 2.3653 -5.5826 0.3361 37 1 1.8409 -6.4723 -1.9034 38 1 0.0878 -6.6053 -2.2154 39 1 1.2368 -7.4706 -2.8213 40 1 1.5977 -10.5000 -5.6365 41 1 1.8635 -7.1814 -9.4427 42 1 1.6225 -5.4033 -7.5546 43 1 0.2646 -3.0221 -3.4587 44 1 1.7716 -3.1118 -2.4954 45 1 -0.7448 -2.6586 0.2053 46 1 -0.2030 -1.6753 -1.1701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088027570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = 69.432563 kcal Electronic energy + Delta-G solvation = -29837.330641 eV Core-core repulsion = 25921.147780 eV Total energy + Delta-G solvation = -3916.182860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.83651 -41.45262 -39.60145 -38.88961 -36.89953 -34.40004 -33.73191 -32.56285 -32.16257 -31.04738 -30.63038 -28.93571 -27.46004 -26.05882 -24.59458 -23.82604 -23.23671 -22.75503 -22.14572 -20.90134 -19.99655 -19.22708 -18.70924 -18.34484 -17.43582 -17.26052 -16.63135 -16.52975 -16.07907 -15.88081 -15.72551 -15.50116 -15.28322 -15.02544 -14.77997 -14.50498 -14.30616 -13.96091 -13.80755 -13.71735 -13.62835 -13.30895 -13.19558 -12.91398 -12.80010 -12.68562 -12.50310 -12.28198 -11.97498 -11.92444 -11.68067 -11.26247 -11.22292 -10.98637 -10.96804 -10.52730 -10.49451 -9.77408 -9.62662 -9.00410 -8.49302 -7.84842 -5.38885 -0.56470 0.37625 1.44652 1.46753 1.55960 1.59943 1.84822 1.89034 2.06558 2.50223 2.89291 3.23846 3.30682 3.44873 3.67316 3.70623 3.75260 3.85329 3.88298 3.94525 4.11727 4.15657 4.26713 4.36788 4.43590 4.47230 4.55336 4.67282 4.69289 4.72079 4.78136 4.89943 5.01916 5.08786 5.13918 5.17546 5.21554 5.28701 5.35578 5.39112 5.41874 5.53684 5.64479 5.68818 5.81037 5.86053 6.45114 6.48965 6.57456 6.89472 7.07573 7.21094 7.89652 8.45266 9.18942 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.002877 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.640211 B = 9730.361128 C =10659.785307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.059 0.941 9 N -0.609 5.609 10 C 0.137 3.863 11 C -0.120 4.120 12 C -0.078 4.078 13 H 0.123 0.877 14 C 0.091 3.909 15 N -0.611 5.611 16 C 0.566 3.434 17 O -0.584 6.584 18 C -0.172 4.172 19 C 0.070 3.930 20 N -0.491 5.491 21 C 0.151 3.849 22 C 0.009 3.991 23 N -0.552 5.552 24 H 0.445 0.555 25 C 0.110 3.890 26 C -0.248 4.248 27 C -0.052 4.052 28 C 0.135 3.865 29 C -0.106 4.106 30 H 0.077 0.923 31 C 0.185 3.815 32 H 0.249 0.751 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.203 0.797 40 H 0.199 0.801 41 H 0.226 0.774 42 H 0.131 0.869 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.003 0.997 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -24.757 -13.267 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.386 4.386 8 H 0.076 0.924 9 N -0.333 5.333 10 C 0.012 3.988 11 C -0.159 4.159 12 C -0.096 4.096 13 H 0.141 0.859 14 C -0.029 4.029 15 N -0.343 5.343 16 C 0.357 3.643 17 O -0.466 6.466 18 C -0.178 4.178 19 C -0.080 4.080 20 N -0.200 5.200 21 C -0.015 4.015 22 C -0.102 4.102 23 N -0.157 5.157 24 H 0.287 0.713 25 C -0.022 4.022 26 C -0.273 4.273 27 C -0.064 4.064 28 C 0.012 3.988 29 C -0.126 4.126 30 H 0.096 0.904 31 C 0.059 3.941 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.218 0.782 40 H 0.216 0.784 41 H 0.242 0.758 42 H 0.149 0.851 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.021 0.979 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.623 -24.882 -13.131 28.181 hybrid contribution 0.336 2.319 -0.866 2.499 sum 1.959 -22.563 -13.997 26.624 Atomic orbital electron populations 1.70057 1.06391 1.25501 1.55638 1.25967 0.96308 1.01101 1.00425 0.85311 0.78674 0.80424 0.76737 1.19386 1.22169 1.21432 1.19350 0.90701 0.84332 1.44196 0.92374 1.44174 1.19966 1.10022 1.59105 1.21080 0.97087 0.87469 0.93132 1.21955 0.95946 0.99092 0.98943 1.22237 0.97679 0.93969 0.95750 0.85899 1.23432 1.02805 0.92210 0.84468 1.49032 1.68829 1.09164 1.07298 1.18135 0.76495 0.88795 0.80831 1.90710 1.52615 1.53342 1.49896 1.20272 1.10438 0.92871 0.94224 1.24503 0.94619 0.87181 1.01702 1.67822 1.14882 1.17510 1.19746 1.22672 0.93262 1.00403 0.85149 1.19393 1.09094 0.94736 0.86934 1.41761 1.60861 1.09430 1.03617 0.71269 1.22749 0.97215 0.81829 1.00423 1.20898 1.14653 1.00402 0.91314 1.18570 1.00385 0.94262 0.93206 1.21846 0.99246 0.82536 0.95151 1.21868 0.98584 0.97703 0.94486 0.90442 1.19793 0.86372 0.94512 0.93432 0.94112 0.93124 0.95193 0.94242 0.88891 0.88133 0.87943 0.78154 0.78408 0.75798 0.85120 0.93455 0.93245 0.97901 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 10.67 21.65 0.23 -54.63 16 2 C -0.04 -2.39 5.33 84.86 0.45 -1.94 16 3 Si 0.96 45.91 29.56 68.60 2.03 47.94 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 7 C -0.26 -14.13 9.64 84.04 0.81 -13.32 16 8 H 0.06 3.21 7.83 -2.91 -0.02 3.19 16 9 N -0.61 -29.97 2.83 -705.56 -2.00 -31.96 16 10 C 0.14 5.36 6.52 86.16 0.56 5.92 16 11 C -0.12 -3.66 4.78 30.54 0.15 -3.52 16 12 C -0.08 -2.16 3.58 -9.59 -0.03 -2.20 16 13 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 14 C 0.09 2.24 4.25 86.74 0.37 2.61 16 15 N -0.61 -20.84 3.38 -820.56 -2.77 -23.61 16 16 C 0.57 21.09 7.81 86.65 0.68 21.76 16 17 O -0.58 -26.19 15.59 -4.06 -0.06 -26.26 16 18 C -0.17 -5.25 5.91 -19.87 -0.12 -5.37 16 19 C 0.07 1.72 9.84 84.92 0.84 2.56 16 20 N -0.49 -10.71 10.30 -194.56 -2.00 -12.71 16 21 C 0.15 2.51 11.21 84.79 0.95 3.46 16 22 C 0.01 0.17 7.31 38.99 0.29 0.45 16 23 N -0.55 -5.79 6.13 -187.56 -1.15 -6.94 16 24 H 0.44 0.57 8.96 -92.71 -0.83 -0.26 16 25 C 0.11 1.45 11.83 83.13 0.98 2.44 16 26 C -0.25 -6.27 10.10 22.15 0.22 -6.04 16 27 C -0.05 -1.45 6.03 -21.14 -0.13 -1.58 16 28 C 0.13 5.44 5.81 86.41 0.50 5.94 16 29 C -0.11 -3.88 2.82 -11.10 -0.03 -3.91 16 30 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 31 C 0.19 8.75 4.62 85.40 0.39 9.15 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.05 1.98 7.97 -2.39 -0.02 1.96 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 1.38 7.11 -2.39 -0.02 1.36 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.10 2.10 6.36 -2.39 -0.02 2.09 16 38 H 0.10 2.01 6.84 -2.38 -0.02 1.99 16 39 H 0.20 4.18 2.72 -7.20 -0.02 4.16 16 40 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.13 3.97 7.21 -2.91 -0.02 3.95 16 43 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 44 H 0.05 2.31 7.46 -2.39 -0.02 2.29 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.06 3.43 5.96 -2.39 -0.01 3.42 16 Total: -1.00 -80.65 358.85 1.35 -79.30 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.19 Total: 12.46 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.88 Total: 16.41 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -7.69 Total: -129.86 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.65 1.35 -79.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088027570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.735 kcal (2) G-P(sol) polarization free energy of solvation -80.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds