Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99701 * 2 1 4 4 H 1.48493 * 109.47220 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47263 * 30.00714 * 3 2 1 6 6 H 1.48500 * 109.46501 * 150.00307 * 3 2 1 7 7 C 1.38804 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99846 * 173.87275 * 7 2 1 9 9 N 1.36943 * 120.00159 * 353.86723 * 7 2 1 10 10 C 1.44316 * 116.35303 * 334.73752 * 9 7 2 11 11 C 1.51609 * 113.11437 * 187.25532 * 10 9 7 12 12 C 1.52870 * 111.55536 * 320.91842 * 11 10 9 13 13 H 1.09005 * 112.86080 * 294.18813 * 12 11 10 14 14 C 1.56198 * 106.67510 * 168.34776 * 12 11 10 15 15 N 1.47757 * 104.00507 * 286.46251 * 14 12 11 16 16 C 1.34777 * 125.81457 * 154.06107 * 15 14 12 17 17 O 1.21636 * 120.00566 * 4.99018 * 16 15 14 18 18 C 1.47311 * 119.99584 * 184.98512 * 16 15 14 19 19 C 1.46612 * 120.61420 * 352.29111 * 18 16 15 20 20 C 1.34231 * 119.80629 * 179.97438 * 19 18 16 21 21 N 1.37382 * 120.95961 * 359.97438 * 20 19 18 22 22 C 1.34895 * 132.30992 * 180.02562 * 21 20 19 23 23 N 1.30993 * 109.50718 * 179.97438 * 22 21 20 24 24 C 1.33126 * 109.93237 * 0.02562 * 23 22 21 25 25 C 1.38192 * 120.82914 * 0.30930 * 21 20 19 26 26 C 1.38583 * 120.61470 * 172.27658 * 18 16 15 27 27 C 1.47616 * 108.36253 * 333.79569 * 15 14 12 28 28 C 1.53574 * 106.34207 * 0.86397 * 27 15 14 29 29 H 1.08991 * 108.70964 * 270.18261 * 28 27 15 30 30 C 1.43989 * 116.35247 * 154.71735 * 9 7 2 31 31 H 0.97006 * 120.00059 * 359.97438 * 1 2 3 32 32 H 1.09000 * 108.75957 * 308.19560 * 10 9 7 33 33 H 1.08999 * 108.75955 * 66.31817 * 10 9 7 34 34 H 1.09001 * 109.05953 * 81.45231 * 11 10 9 35 35 H 1.08994 * 109.06182 * 200.45014 * 11 10 9 36 36 H 1.09002 * 110.62571 * 167.79969 * 14 12 11 37 37 H 1.09007 * 110.48295 * 45.05296 * 14 12 11 38 38 H 1.07998 * 120.09361 * 359.96505 * 19 18 16 39 39 H 1.08006 * 119.51597 * 180.02562 * 20 19 18 40 40 H 1.07995 * 125.24522 * 359.94138 * 22 21 20 41 41 H 1.07993 * 126.31108 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.48922 * 0.02562 * 26 18 16 43 43 H 1.09000 * 110.07872 * 120.08209 * 27 15 14 44 44 H 1.08997 * 110.08333 * 241.58660 * 27 15 14 45 45 H 1.09002 * 108.15965 * 60.78567 * 30 9 7 46 46 H 1.08998 * 108.00081 * 304.09898 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0857 -1.2047 -0.1004 9 7 1.3315 -2.3847 0.1256 10 6 0.0550 -2.3224 0.7961 11 6 -0.5509 -3.6886 1.0508 12 6 -0.3173 -4.6349 -0.1268 13 1 -0.8373 -4.3210 -1.0319 14 6 -0.7076 -6.0656 0.3637 15 7 0.3995 -6.4495 1.2638 16 6 0.3190 -7.3275 2.2831 17 8 -0.7096 -7.9491 2.4706 18 6 1.4768 -7.5345 3.1700 19 6 2.7731 -6.9235 2.8605 20 6 3.8172 -7.1224 3.6803 21 7 3.6913 -7.8926 4.8109 22 6 4.5678 -8.2382 5.7764 23 7 3.9686 -8.9979 6.6595 24 6 2.6958 -9.1785 6.3137 25 6 2.4865 -8.4888 5.1312 26 6 1.3608 -8.3102 4.3125 27 6 1.6103 -5.7122 0.8522 28 6 1.1972 -4.8321 -0.3366 29 1 1.3441 -5.3967 -1.2573 30 6 1.9711 -3.5508 -0.4260 31 1 -0.4850 0.8401 0.0004 32 1 0.1852 -1.8132 1.7511 33 1 -0.6347 -1.7418 0.1835 34 1 -0.1001 -4.1165 1.9463 35 1 -1.6234 -3.5782 1.2103 36 1 -0.7725 -6.7556 -0.4776 37 1 -1.6510 -6.0377 0.9092 38 1 2.8875 -6.3153 1.9755 39 1 4.7699 -6.6697 3.4480 40 1 5.6037 -7.9357 5.8150 41 1 1.9628 -9.7597 6.8534 42 1 0.4190 -8.7736 4.5670 43 1 1.9663 -5.0895 1.6729 44 1 2.3892 -6.4115 0.5484 45 1 2.9220 -3.6919 0.0880 46 1 2.1817 -3.3540 -1.4771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088027776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 101.143658 kcal Electronic energy + Delta-G solvation = -29783.606181 eV Core-core repulsion = 25868.798417 eV Total energy + Delta-G solvation = -3914.807764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.74030 -41.77372 -39.81100 -37.89572 -37.34254 -34.48831 -34.17696 -33.23011 -32.10271 -31.72180 -29.59954 -29.19475 -27.27024 -25.95506 -24.73365 -24.26264 -23.28372 -22.92287 -22.74896 -20.74550 -19.53330 -19.05639 -18.84086 -18.72543 -17.28398 -17.03522 -16.82270 -16.76375 -16.55632 -15.87479 -15.69704 -15.62004 -15.45971 -15.27186 -14.84170 -14.68761 -14.55502 -14.39811 -14.03699 -13.74360 -13.40914 -13.20412 -13.02281 -12.87972 -12.78879 -12.69625 -12.48485 -12.12855 -12.02616 -11.75240 -11.61533 -11.40146 -11.34932 -11.29583 -11.21398 -11.06811 -10.53984 -10.34189 -9.76715 -8.66538 -8.58706 -7.53638 -5.33381 -0.58724 0.12035 1.48962 1.49803 1.56069 1.58167 1.61914 1.81943 2.03093 2.48132 2.52769 3.19906 3.31093 3.40803 3.48265 3.59449 3.66675 3.74494 3.80502 3.87038 3.88242 3.95530 4.18540 4.27638 4.42175 4.45181 4.50530 4.52826 4.62617 4.68396 4.69534 4.80296 4.88247 4.92819 4.94124 5.02266 5.10038 5.12335 5.22879 5.31525 5.38614 5.40446 5.47045 5.54723 5.73742 6.11742 6.16088 6.37018 6.55101 6.78052 6.96206 7.30352 8.13029 8.28758 9.20231 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.003059 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.827405 B = 9151.206883 C =10446.459430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.268 4.268 8 H 0.072 0.928 9 N -0.607 5.607 10 C 0.175 3.825 11 C -0.114 4.114 12 C -0.079 4.079 13 H 0.104 0.896 14 C 0.115 3.885 15 N -0.606 5.606 16 C 0.577 3.423 17 O -0.580 6.580 18 C -0.161 4.161 19 C -0.151 4.151 20 C 0.049 3.951 21 N -0.372 5.372 22 C 0.163 3.837 23 N -0.493 5.493 24 C 0.001 3.999 25 C -0.040 4.040 26 C 0.003 3.997 27 C 0.102 3.898 28 C -0.097 4.097 29 H 0.108 0.892 30 C 0.173 3.827 31 H 0.244 0.756 32 H -0.024 1.024 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.196 0.804 39 H 0.212 0.788 40 H 0.251 0.749 41 H 0.201 0.799 42 H 0.157 0.843 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.028 0.972 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 -16.786 3.805 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.399 4.399 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.050 3.950 11 C -0.152 4.152 12 C -0.098 4.098 13 H 0.122 0.878 14 C -0.007 4.007 15 N -0.337 5.337 16 C 0.368 3.632 17 O -0.462 6.462 18 C -0.166 4.166 19 C -0.170 4.170 20 C -0.068 4.068 21 N -0.043 5.043 22 C -0.113 4.113 23 N -0.207 5.207 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.018 4.018 27 C -0.019 4.019 28 C -0.116 4.116 29 H 0.126 0.874 30 C 0.047 3.953 31 H 0.054 0.946 32 H -0.006 1.006 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.212 0.788 39 H 0.228 0.772 40 H 0.267 0.733 41 H 0.218 0.782 42 H 0.175 0.825 43 H 0.094 0.906 44 H 0.131 0.869 45 H 0.046 0.954 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.793 -17.365 4.641 19.591 hybrid contribution -0.452 1.697 -0.437 1.810 sum 7.341 -15.668 4.204 17.806 Atomic orbital electron populations 1.70129 1.06302 1.24510 1.57092 1.25876 0.96213 1.01318 1.01279 0.85265 0.77905 0.79717 0.77534 1.21034 1.22499 1.19535 1.19630 0.91294 0.85298 1.43686 0.90976 1.42954 1.20313 1.04347 1.65582 1.20200 0.87917 0.92768 0.94078 1.21526 1.00009 0.96145 0.97523 1.22227 0.96191 0.92918 0.98504 0.87829 1.22680 0.89820 0.95079 0.93147 1.48505 1.13219 1.41544 1.30471 1.17785 0.87164 0.78569 0.79639 1.90771 1.32930 1.49331 1.73208 1.20879 0.94387 1.03880 0.97484 1.23388 0.89974 1.00933 1.02696 1.22228 1.02859 0.96211 0.85471 1.43212 1.10480 1.32458 1.18185 1.25799 0.98871 1.00843 0.85758 1.70015 1.07332 1.16339 1.26976 1.23175 0.94476 1.03643 0.94255 1.19661 0.87691 1.06275 1.01147 1.20968 0.97031 0.93317 0.90523 1.22760 0.87498 0.94517 0.97109 1.21516 0.95002 0.95792 0.99295 0.87405 1.19461 0.94320 0.85333 0.96145 0.94603 1.00583 0.91683 0.93931 0.92438 0.89162 0.91341 0.78807 0.77174 0.73328 0.78208 0.82545 0.90594 0.86857 0.95448 0.96341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.15 9.93 21.65 0.22 -52.94 16 2 C -0.05 -2.82 5.27 84.86 0.45 -2.38 16 3 Si 0.97 43.50 29.56 68.60 2.03 45.53 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.27 -13.91 9.40 84.03 0.79 -13.12 16 8 H 0.07 3.58 7.84 -2.91 -0.02 3.55 16 9 N -0.61 -28.00 3.25 -722.10 -2.35 -30.35 16 10 C 0.18 8.28 4.75 86.33 0.41 8.69 16 11 C -0.11 -4.11 4.98 30.09 0.15 -3.96 16 12 C -0.08 -2.26 3.77 -9.33 -0.04 -2.30 16 13 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 14 C 0.11 2.89 6.23 87.25 0.54 3.44 16 15 N -0.61 -15.39 2.80 -812.77 -2.28 -17.67 16 16 C 0.58 16.49 7.81 86.63 0.68 17.17 16 17 O -0.58 -20.30 16.71 -4.14 -0.07 -20.37 16 18 C -0.16 -3.85 6.05 -18.62 -0.11 -3.96 16 19 C -0.15 -2.68 8.66 23.54 0.20 -2.48 16 20 C 0.05 0.71 10.92 82.91 0.91 1.62 16 21 N -0.37 -6.85 2.94 -351.64 -1.03 -7.89 16 22 C 0.16 2.70 12.70 180.17 2.29 4.99 16 23 N -0.49 -10.78 11.18 -197.90 -2.21 -12.99 16 24 C 0.00 0.01 12.04 84.56 1.02 1.03 16 25 C -0.04 -0.87 6.77 38.71 0.26 -0.60 16 26 C 0.00 0.07 9.70 22.86 0.22 0.29 16 27 C 0.10 2.19 3.51 86.36 0.30 2.49 16 28 C -0.10 -2.47 2.68 -11.19 -0.03 -2.50 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 30 C 0.17 5.94 5.67 85.87 0.49 6.43 16 31 H 0.24 13.62 8.31 -92.70 -0.77 12.85 16 32 H -0.02 -1.31 8.06 -2.39 -0.02 -1.33 16 33 H 0.07 3.57 5.62 -2.39 -0.01 3.55 16 34 H 0.04 1.54 6.77 -2.39 -0.02 1.52 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.91 7.98 -2.38 -0.02 1.89 16 38 H 0.20 2.85 3.01 -3.11 -0.01 2.84 16 39 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.25 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.20 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.16 3.51 7.70 -2.91 -0.02 3.49 16 43 H 0.08 1.79 6.37 -2.39 -0.02 1.78 16 44 H 0.11 1.63 6.77 -2.39 -0.02 1.62 16 45 H 0.03 0.88 7.78 -2.39 -0.02 0.86 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -72.99 359.70 3.84 -69.15 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.01 Total: 12.68 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 8.53 Total: 14.85 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -7.66 Total: -121.83 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.07 Total: -20.37 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.99 3.84 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088027776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.292 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds