Wall clock time and date at job start Sat Apr 11 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38182 * 126.45760 * 46.04142 * 3 2 1 5 5 N 1.34428 * 108.38420 * 179.97438 * 4 3 2 6 6 H 0.96994 * 125.40395 * 179.97438 * 5 4 3 7 7 C 1.37749 * 109.18821 * 359.97438 * 5 4 3 8 8 C 1.46790 * 125.84460 * 179.97438 * 7 5 4 9 9 O 1.21686 * 119.99753 * 171.91559 * 8 7 5 10 10 N 1.34774 * 120.00641 * 351.91662 * 8 7 5 11 11 C 1.48575 * 123.30100 * 353.41163 * 10 8 7 12 12 C 1.56119 * 106.44854 * 211.26923 * 11 10 8 13 13 H 1.08997 * 113.66528 * 165.66890 * 12 11 10 14 14 C 1.57070 * 102.50131 * 41.61366 * 12 11 10 15 15 C 1.54288 * 106.42290 * 281.08328 * 14 12 11 16 16 C 1.49274 * 123.31065 * 173.45374 * 10 8 7 17 17 H 1.09003 * 112.80369 * 341.16073 * 16 10 8 18 18 C 1.52101 * 103.22281 * 219.36503 * 16 10 8 19 19 H 1.08997 * 111.90932 * 41.13892 * 18 16 10 20 20 C 1.53133 * 118.59873 * 173.89856 * 18 16 10 21 21 N 1.49350 * 103.46367 * 150.00946 * 20 18 16 22 22 C 1.36933 * 125.91407 * 154.25739 * 21 20 18 23 23 H 1.07999 * 120.00007 * 180.02562 * 22 21 20 24 24 C 1.38813 * 120.00166 * 0.02562 * 22 21 20 25 25 N 1.31620 * 120.00169 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99933 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47003 * 90.00298 * 26 24 22 28 28 H 1.48498 * 109.46739 * 209.99850 * 26 24 22 29 29 H 1.48501 * 109.47331 * 329.99919 * 26 24 22 30 30 C 1.49473 * 108.16893 * 334.27435 * 21 20 18 31 31 C 1.47853 * 104.29518 * 357.04154 * 30 21 20 32 32 H 1.09003 * 102.09858 * 288.09923 * 31 30 21 33 33 C 1.36406 * 108.30496 * 0.26225 * 7 5 4 34 34 H 1.08000 * 125.80839 * 359.97438 * 4 3 2 35 35 H 1.08997 * 110.05723 * 92.03094 * 11 10 8 36 36 H 1.09007 * 110.13905 * 330.54817 * 11 10 8 37 37 H 1.09001 * 110.06078 * 40.31209 * 14 12 11 38 38 H 1.09006 * 110.05483 * 161.75090 * 14 12 11 39 39 H 1.09000 * 109.62062 * 276.17484 * 15 14 12 40 40 H 1.09001 * 109.62241 * 155.62018 * 15 14 12 41 41 H 1.08997 * 110.62737 * 268.49748 * 20 18 16 42 42 H 1.08997 * 110.62678 * 31.51981 * 20 18 16 43 43 H 0.96995 * 120.00539 * 179.97438 * 25 24 22 44 44 H 1.08995 * 110.46713 * 115.74562 * 30 21 20 45 45 H 1.08999 * 110.46750 * 238.33989 * 30 21 20 46 46 H 1.07994 * 126.48414 * 179.74016 * 33 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3895 -0.7705 -0.8000 5 7 4.6673 -0.4800 -0.5002 6 1 5.4469 -0.8805 -0.9156 7 6 4.6937 0.4767 0.4905 8 6 5.8998 1.0580 1.0923 9 8 5.8050 2.0010 1.8555 10 7 7.1122 0.5473 0.7995 11 6 7.3050 -0.6858 -0.0065 12 6 8.6073 -1.3627 0.5257 13 1 8.7314 -2.3936 0.1942 14 6 8.4678 -1.1923 2.0809 15 6 8.8741 0.2619 2.3985 16 6 8.3932 1.1645 1.2540 17 1 8.2782 2.2074 1.5494 18 6 9.3072 0.9955 0.0501 19 1 8.7872 1.1963 -0.8866 20 6 10.6943 1.6434 0.0861 21 7 11.5237 0.7366 -0.7626 22 6 12.6554 1.0901 -1.4476 23 1 13.1830 0.3536 -2.0355 24 6 13.1246 2.3951 -1.3866 25 7 12.4819 3.2927 -0.6698 26 14 14.6689 2.8771 -2.3206 27 1 14.2998 3.3369 -3.6836 28 1 15.3616 3.9745 -1.5988 29 1 15.5728 1.7033 -2.4220 30 6 10.9043 -0.6235 -0.7349 31 6 9.7632 -0.4862 0.1951 32 1 10.2636 -0.4038 1.1600 33 6 3.4071 0.7867 0.8211 34 1 3.0608 -1.4849 -1.5402 35 1 7.4205 -0.4297 -1.0597 36 1 6.4553 -1.3560 0.1238 37 1 7.4359 -1.3671 2.3852 38 1 9.1315 -1.8882 2.5942 39 1 9.9586 0.3281 2.4860 40 1 8.4090 0.5761 3.3329 41 1 10.6613 2.6454 -0.3414 42 1 11.0781 1.6723 1.1059 43 1 12.8099 4.2045 -0.6268 44 1 10.5546 -0.9033 -1.7286 45 1 11.6159 -1.3588 -0.3593 46 1 3.0899 1.4997 1.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089791013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:34 Heat of formation + Delta-G solvation = 136.272116 kcal Electronic energy + Delta-G solvation = -30055.913545 eV Core-core repulsion = 26142.629065 eV Total energy + Delta-G solvation = -3913.284480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27229 -41.37662 -38.52632 -36.60586 -36.06159 -33.44337 -32.10174 -31.94452 -31.32809 -29.84895 -29.17755 -27.42423 -25.81136 -24.53551 -23.51634 -22.68995 -21.84233 -21.42031 -20.57838 -20.06134 -18.57783 -17.36758 -17.09328 -16.61549 -16.38037 -16.19649 -15.92078 -15.19473 -14.99325 -14.58634 -14.31496 -13.92612 -13.82929 -13.60955 -13.44496 -13.24970 -13.22821 -13.02524 -12.98950 -12.75560 -12.30082 -12.22818 -12.11525 -11.85028 -11.38256 -11.17300 -11.10327 -11.01419 -10.88019 -10.74852 -10.41462 -10.14925 -10.02797 -9.78084 -9.48638 -9.45455 -9.28236 -8.81725 -8.74586 -8.53391 -6.94770 -5.72250 -3.14297 1.11739 1.49037 2.41761 2.63581 2.76271 3.11580 3.35597 3.40581 3.42892 3.43433 3.87951 4.21695 4.31256 4.37039 4.50854 4.55583 4.65605 4.87601 4.89828 4.95169 5.07240 5.20358 5.26555 5.27307 5.38254 5.43003 5.48174 5.55782 5.57128 5.78283 5.91703 5.95251 6.02499 6.05286 6.14758 6.18799 6.27463 6.30642 6.36354 6.45059 6.57472 6.67062 6.77347 6.94276 7.33118 7.38915 7.41667 7.49622 7.74102 8.02599 8.21913 9.10126 9.71589 10.36912 11.32157 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002688 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.028886 B =10412.324705 C =10610.753856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.293 3.707 3 C -0.136 4.136 4 C 0.088 3.912 5 N -0.527 5.527 6 H 0.429 0.571 7 C -0.038 4.038 8 C 0.593 3.407 9 O -0.526 6.526 10 N -0.613 5.613 11 C 0.095 3.905 12 C -0.062 4.062 13 H 0.102 0.898 14 C -0.111 4.111 15 C -0.132 4.132 16 C 0.165 3.835 17 H 0.108 0.892 18 C -0.125 4.125 19 H 0.080 0.920 20 C 0.167 3.833 21 N -0.607 5.607 22 C -0.221 4.221 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.161 3.839 31 C -0.152 4.152 32 H 0.071 0.929 33 C -0.062 4.062 34 H 0.187 0.813 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.021 0.979 45 H 0.030 0.970 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.217 -12.035 1.772 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.022 4.022 3 C -0.146 4.146 4 C -0.056 4.056 5 N -0.128 5.128 6 H 0.275 0.725 7 C -0.150 4.150 8 C 0.381 3.619 9 O -0.403 6.403 10 N -0.347 5.347 11 C -0.028 4.028 12 C -0.082 4.082 13 H 0.120 0.880 14 C -0.149 4.149 15 C -0.170 4.170 16 C 0.063 3.937 17 H 0.126 0.874 18 C -0.145 4.145 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.335 5.335 22 C -0.349 4.349 23 H 0.096 0.904 24 C -0.207 4.207 25 N -0.571 5.571 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.208 1.208 30 C 0.036 3.964 31 C -0.171 4.171 32 H 0.089 0.911 33 C -0.089 4.089 34 H 0.204 0.796 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.048 0.952 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.656 -11.326 2.168 18.649 hybrid contribution 1.585 -0.009 -0.723 1.742 sum -13.071 -11.335 1.445 17.361 Atomic orbital electron populations 1.81273 1.11846 1.09304 1.09156 1.24665 0.91451 0.93039 0.93081 1.15405 0.84982 1.07640 1.06612 1.22318 0.82673 1.00428 1.00223 1.42753 1.08539 1.31475 1.29988 0.72514 1.20198 0.95617 1.00106 0.99032 1.16872 0.81093 0.82873 0.81094 1.90865 1.85450 1.28183 1.35761 1.49394 1.05779 1.26466 1.53011 1.22858 0.98470 0.85865 0.95641 1.21643 0.92026 0.98882 0.95620 0.87963 1.22727 1.01057 0.96491 0.94622 1.22327 1.01990 0.94616 0.98071 1.21751 0.80351 0.97636 0.93921 0.87422 1.22995 0.98329 0.96685 0.96491 0.90151 1.21706 0.83141 0.96878 0.94035 1.45566 1.28414 1.03192 1.56279 1.19067 0.99781 0.94336 1.21734 0.90418 1.24776 0.99493 0.96071 1.00365 1.69750 1.40278 1.03035 1.44020 0.86078 0.82361 0.77941 0.79127 1.21610 1.21638 1.20771 1.19931 0.91456 0.89351 0.95679 1.20989 0.96184 0.95896 1.04033 0.91127 1.21039 0.89242 0.99215 0.99362 0.79585 0.90708 0.90880 0.91947 0.91525 0.89697 0.91555 0.87202 0.96467 0.93622 0.96145 0.95241 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.53 18.54 41.84 0.78 -4.75 16 2 C 0.29 2.99 15.83 -22.47 -0.36 2.64 16 3 C -0.14 -1.13 5.97 -106.83 -0.64 -1.77 16 4 C 0.09 0.48 11.90 -16.44 -0.20 0.29 16 5 N -0.53 -3.35 5.10 -9.27 -0.05 -3.40 16 6 H 0.43 1.90 5.21 -40.82 -0.21 1.69 16 7 C -0.04 -0.38 6.67 -82.41 -0.55 -0.93 16 8 C 0.59 7.76 7.75 -12.80 -0.10 7.66 16 9 O -0.53 -8.82 16.83 5.20 0.09 -8.73 16 10 N -0.61 -7.35 2.27 -162.08 -0.37 -7.72 16 11 C 0.09 0.83 3.82 -1.23 0.00 0.83 16 12 C -0.06 -0.63 4.44 -88.80 -0.39 -1.02 16 13 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.11 -1.16 5.55 -23.85 -0.13 -1.29 16 15 C -0.13 -1.70 5.57 -25.80 -0.14 -1.85 16 16 C 0.16 2.38 3.70 -66.59 -0.25 2.13 16 17 H 0.11 1.75 7.73 -51.93 -0.40 1.34 16 18 C -0.12 -2.06 2.74 -89.57 -0.25 -2.31 16 19 H 0.08 1.39 7.36 -51.93 -0.38 1.01 16 20 C 0.17 3.69 5.33 -2.39 -0.01 3.68 16 21 N -0.61 -14.38 3.50 -171.27 -0.60 -14.98 16 22 C -0.22 -5.85 10.32 -15.06 -0.16 -6.00 16 23 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 25 N -0.92 -25.89 10.10 55.49 0.56 -25.33 16 26 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 C 0.16 2.94 7.14 -4.88 -0.03 2.91 16 31 C -0.15 -2.21 2.57 -93.73 -0.24 -2.45 16 32 H 0.07 1.12 3.73 -51.93 -0.19 0.93 16 33 C -0.06 -0.60 10.55 -39.09 -0.41 -1.02 16 34 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 35 H 0.07 0.63 7.31 -51.93 -0.38 0.25 16 36 H 0.07 0.43 5.51 -51.92 -0.29 0.15 16 37 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.21 5.89 -51.93 -0.31 0.91 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 2.84 5.86 -51.93 -0.30 2.53 16 42 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -32.65 359.29 -8.92 -41.56 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.76 Total: 0.48 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.96 Total: 1.09 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.32 Total: -56.18 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.65 -8.92 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089791013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.836 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds