Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53778 * 111.86091 * 2 1 4 4 N 1.47211 * 106.37612 * 140.62118 * 3 2 1 5 5 C 1.36941 * 126.70547 * 148.72336 * 4 3 2 6 6 H 1.08002 * 119.99454 * 359.97438 * 5 4 3 7 7 C 1.38807 * 120.00090 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00353 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47067 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47058 * 120.00022 * 9 7 5 12 12 H 1.48499 * 109.47035 * 239.99723 * 9 7 5 13 13 C 1.46521 * 106.97004 * 329.55157 * 4 3 2 14 14 C 1.53777 * 106.73202 * 29.89851 * 13 4 3 15 15 H 1.08994 * 112.60582 * 220.37678 * 14 13 4 16 16 C 1.53774 * 109.34682 * 95.37003 * 14 13 4 17 17 N 1.47217 * 106.38226 * 228.53013 * 16 14 13 18 18 C 1.34775 * 126.70456 * 211.27333 * 17 16 14 19 19 O 1.21585 * 119.99850 * 183.40487 * 18 17 16 20 20 C 1.47607 * 120.00062 * 3.39922 * 18 17 16 21 21 C 1.38554 * 119.74009 * 151.55571 * 20 18 17 22 22 N 1.33769 * 122.05761 * 180.02562 * 21 20 18 23 23 H 0.97001 * 119.63248 * 180.02562 * 22 21 20 24 24 C 1.37222 * 120.73916 * 359.97438 * 22 21 20 25 25 N 1.32001 * 134.47430 * 179.97438 * 24 22 21 26 26 C 1.33413 * 110.93561 * 180.02562 * 25 24 22 27 27 C 1.35788 * 110.89137 * 0.02562 * 26 25 24 28 28 C 1.41389 * 106.45241 * 359.97438 * 27 26 25 29 29 C 1.38761 * 135.65666 * 179.97438 * 28 27 26 30 30 C 1.47216 * 106.59278 * 31.52816 * 17 16 14 31 31 H 1.09003 * 109.47151 * 302.06180 * 1 2 3 32 32 H 1.09006 * 109.46953 * 62.06007 * 1 2 3 33 33 H 1.08995 * 109.47411 * 182.05983 * 1 2 3 34 34 H 1.08997 * 110.07635 * 259.85094 * 3 2 1 35 35 H 1.09006 * 110.07396 * 21.33376 * 3 2 1 36 36 H 0.96994 * 119.99924 * 180.02562 * 8 7 5 37 37 H 1.09002 * 108.72572 * 271.18760 * 13 4 3 38 38 H 1.09004 * 111.06667 * 149.89331 * 13 4 3 39 39 H 1.09000 * 110.07559 * 109.29960 * 16 14 13 40 40 H 1.09002 * 110.12524 * 347.78294 * 16 14 13 41 41 H 1.08006 * 118.97115 * 359.97438 * 21 20 18 42 42 H 1.07993 * 124.55783 * 180.02562 * 26 25 24 43 43 H 1.07997 * 126.77652 * 179.74236 * 27 26 25 44 44 H 1.07999 * 120.72752 * 0.02562 * 29 28 27 45 45 H 1.08996 * 110.07726 * 87.69158 * 30 17 16 46 46 H 1.09001 * 110.07578 * 209.23568 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2704 1.4059 0.8961 5 6 4.4007 2.1711 0.7859 6 1 4.4967 2.8790 -0.0241 7 6 5.4235 2.0360 1.7145 8 7 5.3072 1.1722 2.7008 9 14 6.9657 3.0793 1.5637 10 1 6.8502 3.9649 0.3774 11 1 7.1242 3.9080 2.7858 12 1 8.1484 2.1949 1.4087 13 6 3.0042 0.3937 1.9215 14 6 2.1091 -0.6729 1.2688 15 1 1.3241 -1.0269 1.9369 16 6 2.9851 -1.8266 0.7527 17 7 2.5535 -2.0890 -0.6302 18 6 2.5683 -3.2768 -1.2670 19 8 2.2401 -3.3440 -2.4357 20 6 2.9830 -4.4959 -0.5455 21 6 2.4746 -5.7270 -0.9273 22 7 2.8182 -6.8607 -0.3060 23 1 2.4411 -7.7036 -0.6029 24 6 3.6991 -6.8447 0.7460 25 7 4.2143 -7.7692 1.5349 26 6 5.0434 -7.2259 2.4278 27 6 5.1153 -5.8797 2.2654 28 6 4.2624 -5.5607 1.1838 29 6 3.8898 -4.3988 0.5230 30 6 2.1086 -0.7995 -1.1836 31 1 -0.3633 0.5455 0.8709 32 1 -0.3633 0.4815 -0.9079 33 1 -0.3634 -1.0269 0.0369 34 1 2.4094 1.7073 -1.0077 35 1 1.3568 2.1296 0.3725 36 1 6.0218 1.0781 3.3499 37 1 2.4789 0.8661 2.7515 38 1 3.9306 -0.0600 2.2740 39 1 2.8341 -2.7146 1.3665 40 1 4.0355 -1.5359 0.7679 41 1 1.7786 -5.7726 -1.7519 42 1 5.5846 -7.7819 3.1789 43 1 5.7045 -5.1884 2.8497 44 1 4.2880 -3.4410 0.8237 45 1 2.9542 -0.2679 -1.6200 46 1 1.3385 -0.9617 -1.9377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091762580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = 98.303488 kcal Electronic energy + Delta-G solvation = -30030.525884 eV Core-core repulsion = 26115.594961 eV Total energy + Delta-G solvation = -3914.930923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65638 -40.32355 -38.74784 -37.81434 -35.20862 -34.19314 -32.77460 -30.92003 -30.15317 -29.76233 -28.92438 -26.72088 -25.90308 -25.45913 -24.16626 -23.50966 -22.32987 -21.36302 -20.25395 -19.31696 -18.73693 -18.09504 -17.33029 -16.87871 -16.65817 -16.15466 -15.69856 -15.39275 -15.21759 -14.79809 -14.71645 -14.28324 -13.79691 -13.50197 -13.39506 -13.19382 -12.90520 -12.64020 -12.52368 -12.47647 -12.20525 -11.89690 -11.83305 -11.70238 -11.36853 -10.98737 -10.95216 -10.84377 -10.80343 -10.25689 -10.15872 -10.00967 -9.92772 -9.84519 -9.63990 -9.54726 -8.78249 -8.56717 -8.22260 -7.86291 -6.97015 -5.74425 -3.18808 0.06006 0.90626 2.08202 2.77786 3.06695 3.34479 3.37333 3.41006 3.42756 3.45550 4.03061 4.31833 4.36367 4.40765 4.59231 4.80219 4.87552 5.02445 5.06444 5.13055 5.38725 5.46343 5.49687 5.55795 5.60710 5.70227 5.70731 5.80508 5.87645 5.90655 5.93606 6.05357 6.14334 6.23812 6.24891 6.27321 6.31041 6.38813 6.41268 6.64447 6.69307 6.72812 6.80037 7.03494 7.31678 7.53355 7.65566 7.72164 7.96736 8.14900 8.27873 9.12947 9.72314 10.38160 11.27179 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003769 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.869537 B = 7427.861369 C = 9079.169351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.219 4.219 6 H 0.079 0.921 7 C -0.009 4.009 8 N -0.922 5.922 9 Si 0.914 3.086 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.144 3.856 14 C -0.116 4.116 15 H 0.080 0.920 16 C 0.100 3.900 17 N -0.602 5.602 18 C 0.589 3.411 19 O -0.553 6.553 20 C -0.228 4.228 21 C 0.202 3.798 22 N -0.491 5.491 23 H 0.427 0.573 24 C 0.239 3.761 25 N -0.532 5.532 26 C 0.048 3.952 27 C -0.216 4.216 28 C -0.167 4.167 29 C 0.052 3.948 30 C 0.127 3.873 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.009 0.991 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.189 0.811 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.157 0.843 45 H 0.075 0.925 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -12.648 -4.543 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.347 4.347 6 H 0.097 0.903 7 C -0.205 4.205 8 N -0.571 5.571 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.217 1.217 13 C 0.018 3.982 14 C -0.137 4.137 15 H 0.098 0.902 16 C -0.022 4.022 17 N -0.333 5.333 18 C 0.378 3.622 19 O -0.433 6.433 20 C -0.237 4.237 21 C 0.057 3.943 22 N -0.083 5.083 23 H 0.265 0.735 24 C -0.009 4.009 25 N -0.251 5.251 26 C -0.094 4.094 27 C -0.239 4.239 28 C -0.175 4.175 29 C 0.029 3.971 30 C 0.005 3.995 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.206 0.794 42 H 0.177 0.823 43 H 0.160 0.840 44 H 0.175 0.825 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.219 -13.775 -5.016 16.807 hybrid contribution 0.846 1.045 0.057 1.345 sum -7.373 -12.731 -4.959 15.525 Atomic orbital electron populations 1.21666 0.93670 1.01127 1.01754 1.22248 0.94974 0.97423 0.94454 1.21379 0.90129 0.91881 0.94813 1.44350 1.15278 1.43090 1.29118 1.19141 0.92252 1.14177 1.09174 0.90294 1.24744 0.98754 0.99740 0.97226 1.69600 1.33007 1.37992 1.16458 0.86001 0.82843 0.79348 0.77333 1.20536 1.21701 1.21698 1.21848 0.99082 0.87620 0.89631 1.23104 0.97827 0.96334 0.96431 0.90197 1.22755 1.00199 0.98216 0.81038 1.48419 1.62535 1.07309 1.15009 1.17187 0.77931 0.81514 0.85538 1.90778 1.50990 1.85939 1.15552 1.19180 1.07885 0.93215 1.03452 1.22066 0.94687 0.83964 0.93584 1.40237 1.33555 1.10402 1.24155 0.73550 1.20487 0.95163 0.93318 0.91963 1.69506 1.15288 1.32233 1.08114 1.22322 0.97217 0.92506 0.97390 1.21505 1.04705 0.97149 1.00510 1.20118 1.04032 0.91883 1.01512 1.22127 0.88105 0.99249 0.87641 1.22182 0.99295 0.82196 0.95859 0.92218 0.92678 0.93109 0.93749 0.95846 0.93586 0.97290 0.85586 0.90908 0.89392 0.79441 0.82325 0.83992 0.82524 0.90692 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.45 37.16 0.31 -1.28 16 2 C -0.09 -1.39 1.09 -152.55 -0.17 -1.55 16 3 C 0.14 2.72 6.24 -3.25 -0.02 2.70 16 4 N -0.59 -13.78 3.37 -171.69 -0.58 -14.36 16 5 C -0.22 -5.66 10.33 -15.06 -0.16 -5.82 16 6 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 7 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 8 N -0.92 -24.81 10.06 55.49 0.56 -24.25 16 9 Si 0.91 21.06 29.55 -169.99 -5.02 16.03 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.14 3.11 5.46 -3.63 -0.02 3.09 16 14 C -0.12 -1.93 3.69 -88.83 -0.33 -2.25 16 15 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 16 C 0.10 1.53 4.61 -3.25 -0.01 1.52 16 17 N -0.60 -9.11 3.32 -172.58 -0.57 -9.69 16 18 C 0.59 8.62 7.63 -12.44 -0.09 8.52 16 19 O -0.55 -9.25 16.85 5.29 0.09 -9.16 16 20 C -0.23 -2.76 5.68 -105.11 -0.60 -3.35 16 21 C 0.20 1.77 10.66 -16.59 -0.18 1.59 16 22 N -0.49 -4.27 5.27 -10.37 -0.05 -4.32 16 23 H 0.43 2.18 8.91 -40.82 -0.36 1.82 16 24 C 0.24 3.13 8.64 -153.90 -1.33 1.80 16 25 N -0.53 -7.76 11.16 -11.08 -0.12 -7.89 16 26 C 0.05 0.66 11.69 -17.74 -0.21 0.45 16 27 C -0.22 -2.99 10.99 -39.26 -0.43 -3.42 16 28 C -0.17 -2.33 6.41 -105.01 -0.67 -3.00 16 29 C 0.05 0.68 7.96 -38.54 -0.31 0.37 16 30 C 0.13 1.98 6.14 -3.07 -0.02 1.96 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.82 7.56 -51.93 -0.39 0.42 16 35 H 0.02 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.13 3.04 4.86 -51.93 -0.25 2.79 16 39 H 0.07 0.98 5.70 -51.93 -0.30 0.69 16 40 H 0.09 1.56 6.91 -51.93 -0.36 1.20 16 41 H 0.19 1.07 7.80 -52.48 -0.41 0.66 16 42 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.16 2.07 4.92 -52.49 -0.26 1.81 16 45 H 0.07 1.30 7.47 -51.93 -0.39 0.91 16 46 H 0.07 1.09 7.65 -51.93 -0.40 0.69 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -32.36 364.44 -10.55 -42.91 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.02 Total: 4.24 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -4.32 Total: 0.98 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.77 Total: -60.50 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.36 -10.55 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091762580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.214 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds