Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.54452 * 112.29807 * 2 1 4 4 N 1.48333 * 104.43614 * 97.05422 * 3 2 1 5 5 C 1.36935 * 128.19772 * 221.76621 * 4 3 2 6 6 H 1.08004 * 119.99786 * 171.24147 * 5 4 3 7 7 C 1.38814 * 120.00212 * 351.22910 * 5 4 3 8 8 N 1.31621 * 119.99897 * 348.17042 * 7 5 4 9 9 Si 1.86797 * 120.00032 * 168.16923 * 7 5 4 10 10 H 1.48493 * 109.47173 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47090 * 120.00713 * 9 7 5 12 12 H 1.48505 * 109.46833 * 240.00220 * 9 7 5 13 13 C 1.48337 * 103.60352 * 41.74173 * 4 3 2 14 14 C 1.54450 * 104.32396 * 318.19017 * 13 4 3 15 15 H 1.08994 * 112.30562 * 262.45107 * 14 13 4 16 16 C 1.53745 * 109.01279 * 137.35985 * 14 13 4 17 17 N 1.47198 * 106.42679 * 229.46039 * 16 14 13 18 18 C 1.34778 * 126.70172 * 211.34637 * 17 16 14 19 19 O 1.21595 * 119.99715 * 5.81992 * 18 17 16 20 20 C 1.47578 * 120.00370 * 185.81664 * 18 17 16 21 21 C 1.40085 * 120.35815 * 15.54199 * 20 18 17 22 22 N 1.31161 * 121.12420 * 179.74176 * 21 20 18 23 23 C 1.33368 * 121.67204 * 0.54447 * 22 21 20 24 24 C 1.41856 * 133.16984 * 179.69264 * 23 22 21 25 25 C 1.34451 * 107.95906 * 180.02562 * 24 23 22 26 26 N 1.36535 * 109.71443 * 359.97438 * 25 24 23 27 27 H 0.97007 * 125.59702 * 180.02562 * 26 25 24 28 28 C 1.37853 * 108.80732 * 0.02562 * 26 25 24 29 29 C 1.38728 * 133.56663 * 179.97438 * 28 26 25 30 30 C 1.47189 * 106.59645 * 31.37006 * 17 16 14 31 31 H 1.08990 * 109.47298 * 61.01311 * 1 2 3 32 32 H 1.09002 * 109.47201 * 181.01853 * 1 2 3 33 33 H 1.09005 * 109.46778 * 301.00835 * 1 2 3 34 34 H 1.08998 * 110.46060 * 338.27760 * 3 2 1 35 35 H 1.09000 * 110.45608 * 215.82678 * 3 2 1 36 36 H 0.96998 * 119.99963 * 179.97438 * 8 7 5 37 37 H 1.08992 * 110.46135 * 76.90323 * 13 4 3 38 38 H 1.08997 * 110.46440 * 199.35571 * 13 4 3 39 39 H 1.08997 * 110.06218 * 348.69566 * 16 14 13 40 40 H 1.08992 * 110.06636 * 110.16640 * 16 14 13 41 41 H 1.08002 * 119.43818 * 0.02562 * 21 20 18 42 42 H 1.07997 * 126.01732 * 359.97438 * 24 23 22 43 43 H 1.08001 * 125.14387 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.91399 * 0.05469 * 29 28 26 45 45 H 1.08994 * 110.06701 * 87.87344 * 30 17 16 46 46 H 1.09001 * 110.06372 * 209.33234 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1161 1.4290 0.0000 4 7 2.4196 1.7042 1.4256 5 6 2.2069 2.8598 2.1289 6 1 2.3470 2.8737 3.1997 7 6 1.8115 4.0132 1.4655 8 7 1.8646 4.0677 0.1515 9 14 1.2039 5.4881 2.4377 10 1 1.2400 5.1735 3.8885 11 1 2.0777 6.6566 2.1620 12 1 -0.1897 5.8062 2.0352 13 6 3.0076 0.4311 1.9092 14 6 2.1225 -0.6640 1.2746 15 1 1.3566 -1.0259 1.9605 16 6 3.0226 -1.7970 0.7553 17 7 2.5968 -2.0663 -0.6278 18 6 2.6362 -3.2526 -1.2663 19 8 2.9562 -4.2579 -0.6618 20 6 2.2909 -3.3314 -2.6989 21 6 2.2388 -2.1694 -3.4796 22 7 1.9385 -2.2226 -4.7553 23 6 1.6602 -3.3774 -5.3616 24 6 1.3072 -3.7138 -6.6937 25 6 1.1361 -5.0460 -6.7535 26 7 1.3613 -5.5949 -5.5237 27 1 1.3015 -6.5386 -5.3071 28 6 1.6875 -4.5879 -4.6406 29 6 2.0074 -4.5664 -3.2909 30 6 2.1201 -0.7868 -1.1775 31 1 -0.3633 0.4980 -0.8988 32 1 -0.3634 -1.0275 0.0183 33 1 -0.3633 0.5294 0.8809 34 1 1.3829 2.1415 -0.3780 35 1 3.0268 1.4673 -0.5978 36 1 1.5879 4.8736 -0.3120 37 1 4.0381 0.3334 1.5679 38 1 2.9608 0.3786 2.9969 39 1 4.0661 -1.4825 0.7707 40 1 2.8920 -2.6890 1.3679 41 1 2.4539 -1.2140 -3.0243 42 1 1.1948 -3.0215 -7.5150 43 1 0.8628 -5.5986 -7.6403 44 1 2.0369 -5.4784 -2.7130 45 1 2.9517 -0.2351 -1.6159 46 1 1.3525 -0.9661 -1.9304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091774391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 92.118925 kcal Electronic energy + Delta-G solvation = -29594.251821 eV Core-core repulsion = 25679.052715 eV Total energy + Delta-G solvation = -3915.199106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99953 -40.43256 -38.61281 -37.55206 -35.08612 -33.10510 -32.50801 -31.46569 -30.50267 -30.31456 -29.00939 -26.68317 -25.85665 -25.35603 -23.81899 -23.64571 -22.08181 -21.15665 -20.53759 -19.71291 -18.72870 -18.39798 -17.46010 -16.80585 -16.25151 -16.06263 -15.51695 -15.12463 -15.05133 -14.76063 -14.53993 -14.11857 -13.86039 -13.60036 -13.47308 -13.28364 -13.11180 -12.83556 -12.73164 -12.66946 -12.28570 -12.05423 -11.67762 -11.53008 -11.28284 -10.91664 -10.79196 -10.77498 -10.56325 -10.30687 -10.04273 -9.99934 -9.90147 -9.81246 -9.54842 -9.36552 -8.72018 -8.69341 -8.58280 -8.34237 -6.92642 -5.78300 -3.11378 0.40993 1.10988 2.19372 2.56894 2.97433 3.11048 3.37926 3.44647 3.46538 3.82054 4.05719 4.36025 4.45509 4.52769 4.68655 4.76954 4.87260 4.90048 4.97096 5.14937 5.23383 5.40970 5.43733 5.50777 5.61701 5.63468 5.67698 5.78318 5.84765 5.87271 5.96039 6.08655 6.12127 6.15368 6.18313 6.28714 6.35860 6.47735 6.62181 6.65871 6.70954 6.75971 6.93384 7.01012 7.25503 7.52047 7.63588 7.72621 7.85542 8.18100 8.20777 9.09762 9.73321 10.48525 11.33609 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.002731 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.308245 B =10250.571134 C =11292.646664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C 0.158 3.842 4 N -0.594 5.594 5 C -0.221 4.221 6 H 0.078 0.922 7 C -0.008 4.008 8 N -0.915 5.915 9 Si 0.910 3.090 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.290 1.290 13 C 0.132 3.868 14 C -0.109 4.109 15 H 0.085 0.915 16 C 0.113 3.887 17 N -0.605 5.605 18 C 0.582 3.418 19 O -0.548 6.548 20 C -0.171 4.171 21 C 0.115 3.885 22 N -0.452 5.452 23 C 0.112 3.888 24 C -0.198 4.198 25 C 0.077 3.923 26 N -0.582 5.582 27 H 0.421 0.579 28 C 0.022 3.978 29 C -0.016 4.016 30 C 0.095 3.905 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.021 0.979 36 H 0.253 0.747 37 H 0.028 0.972 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.183 0.817 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.143 0.857 45 H 0.082 0.918 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -18.851 -11.887 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C 0.032 3.968 4 N -0.317 5.317 5 C -0.349 4.349 6 H 0.096 0.904 7 C -0.204 4.204 8 N -0.562 5.562 9 Si 0.740 3.260 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.217 1.217 13 C 0.005 3.995 14 C -0.130 4.130 15 H 0.103 0.897 16 C -0.009 4.009 17 N -0.336 5.336 18 C 0.372 3.628 19 O -0.428 6.428 20 C -0.177 4.177 21 C -0.055 4.055 22 N -0.160 5.160 23 C -0.018 4.018 24 C -0.224 4.224 25 C -0.054 4.054 26 N -0.185 5.185 27 H 0.259 0.741 28 C -0.086 4.086 29 C -0.045 4.045 30 C -0.028 4.028 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.200 0.800 42 H 0.172 0.828 43 H 0.198 0.802 44 H 0.160 0.840 45 H 0.099 0.901 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.077 -18.569 -12.151 22.288 hybrid contribution -0.265 -0.463 0.954 1.093 sum -2.341 -19.032 -11.197 22.205 Atomic orbital electron populations 1.21553 0.93421 1.00019 1.02493 1.22534 0.95921 0.99047 0.92083 1.21978 0.98363 0.90100 0.86387 1.45094 1.70102 1.08909 1.07552 1.19050 1.39396 0.85813 0.90621 0.90379 1.24770 1.02452 0.97442 0.95763 1.69833 1.52542 1.27830 1.06005 0.86080 0.78370 0.82525 0.78999 1.20503 1.21825 1.21656 1.21859 0.93998 0.86519 0.97164 1.23148 0.97874 0.94767 0.97193 0.89685 1.22209 0.98528 0.98670 0.81478 1.48463 1.62290 1.07989 1.14883 1.17484 0.77770 0.81998 0.85589 1.90758 1.49932 1.34282 1.67823 1.20548 1.07695 0.94495 0.95002 1.23907 0.94187 0.98740 0.88616 1.67330 1.11429 1.26788 1.10459 1.19281 1.00150 0.87617 0.94793 1.20614 1.11349 0.94696 0.95715 1.22049 1.01064 0.93994 0.88279 1.41727 1.60041 1.08763 1.07998 0.74093 1.18989 1.06887 0.90105 0.92665 1.20475 0.95064 0.98346 0.90640 1.22766 0.99042 0.83446 0.97497 0.92659 0.94083 0.91687 0.87615 0.96071 0.93619 0.95414 0.93227 0.90950 0.90638 0.80041 0.82786 0.80241 0.83958 0.90062 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.62 37.16 0.32 -1.62 16 2 C -0.09 -1.61 1.08 -152.23 -0.16 -1.77 16 3 C 0.16 3.46 5.27 -2.27 -0.01 3.45 16 4 N -0.59 -14.21 3.38 -168.48 -0.57 -14.78 16 5 C -0.22 -5.87 10.39 -15.06 -0.16 -6.02 16 6 H 0.08 2.03 7.86 -52.48 -0.41 1.61 16 7 C -0.01 -0.21 5.41 -17.43 -0.09 -0.31 16 8 N -0.91 -25.61 10.63 55.49 0.59 -25.02 16 9 Si 0.91 21.40 29.57 -169.99 -5.03 16.37 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.13 2.55 6.76 -2.27 -0.02 2.53 16 14 C -0.11 -1.82 3.73 -88.17 -0.33 -2.15 16 15 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 16 C 0.11 1.73 6.57 -3.27 -0.02 1.71 16 17 N -0.60 -9.25 3.32 -173.07 -0.57 -9.82 16 18 C 0.58 9.22 7.75 -12.45 -0.10 9.12 16 19 O -0.55 -9.98 16.71 5.28 0.09 -9.89 16 20 C -0.17 -2.40 5.82 -104.79 -0.61 -3.01 16 21 C 0.11 1.60 9.28 -17.15 -0.16 1.44 16 22 N -0.45 -6.58 10.40 -10.70 -0.11 -6.70 16 23 C 0.11 1.44 7.32 -84.80 -0.62 0.82 16 24 C -0.20 -1.86 10.84 -39.54 -0.43 -2.29 16 25 C 0.08 0.48 11.82 -16.80 -0.20 0.28 16 26 N -0.58 -4.14 6.14 -10.67 -0.07 -4.20 16 27 H 0.42 1.61 8.96 -40.82 -0.37 1.24 16 28 C 0.02 0.25 7.27 -83.96 -0.61 -0.36 16 29 C -0.02 -0.20 9.72 -38.79 -0.38 -0.58 16 30 C 0.09 1.42 4.24 -3.45 -0.01 1.40 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 2.64 5.81 -51.93 -0.30 2.34 16 35 H 0.02 0.48 7.17 -51.93 -0.37 0.11 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.03 0.54 7.17 -51.93 -0.37 0.16 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 40 H 0.08 1.13 7.87 -51.93 -0.41 0.73 16 41 H 0.18 2.40 3.98 -52.49 -0.21 2.19 16 42 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 44 H 0.14 1.57 7.80 -52.49 -0.41 1.16 16 45 H 0.08 1.20 6.48 -51.93 -0.34 0.86 16 46 H 0.08 1.15 5.48 -51.93 -0.28 0.87 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -33.09 364.00 -9.70 -42.79 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.93 Total: 3.10 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.59 Total: 2.66 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.73 Total: -60.51 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.09 -9.70 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091774391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.906 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds