Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53790 * 112.60334 * 2 1 4 4 N 1.47216 * 106.37549 * 103.51083 * 3 2 1 5 5 C 1.36938 * 126.70296 * 211.25801 * 4 3 2 6 6 H 1.07996 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00255 * 180.02562 * 5 4 3 8 8 N 1.31624 * 119.99634 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00260 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46991 * 59.99729 * 9 7 5 11 11 H 1.48500 * 109.47424 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47179 * 300.00146 * 9 7 5 13 13 C 1.47219 * 106.59574 * 31.27543 * 4 3 2 14 14 C 1.53781 * 106.37413 * 328.72776 * 13 4 3 15 15 H 1.09006 * 112.60548 * 256.48293 * 14 13 4 16 16 C 1.54066 * 109.51966 * 131.52993 * 14 13 4 17 17 N 1.47215 * 106.23095 * 266.26916 * 16 14 13 18 18 C 1.34769 * 126.70394 * 148.68855 * 17 16 14 19 19 O 1.21629 * 120.00433 * 184.86093 * 18 17 16 20 20 C 1.47258 * 119.99845 * 4.86040 * 18 17 16 21 21 C 1.38932 * 120.90798 * 34.90663 * 20 18 17 22 22 C 1.39769 * 119.19209 * 179.77634 * 21 20 18 23 23 C 1.35071 * 121.27388 * 0.44527 * 22 21 20 24 24 N 1.36227 * 121.77006 * 359.51840 * 23 22 21 25 25 N 1.40077 * 132.48924 * 180.25698 * 24 23 22 26 26 C 1.31362 * 108.88601 * 180.02562 * 25 24 23 27 27 C 1.38878 * 108.94055 * 0.02562 * 26 25 24 28 28 C 1.37192 * 120.18746 * 0.26804 * 24 23 22 29 29 C 1.47216 * 106.59297 * 328.42154 * 17 16 14 30 30 H 1.08997 * 109.46785 * 182.60325 * 1 2 3 31 31 H 1.09003 * 109.46581 * 302.60046 * 1 2 3 32 32 H 1.08997 * 109.47423 * 62.60111 * 1 2 3 33 33 H 1.08994 * 110.07213 * 222.73883 * 3 2 1 34 34 H 1.08998 * 110.07127 * 344.28565 * 3 2 1 35 35 H 0.97007 * 119.99424 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.07182 * 209.50084 * 13 4 3 37 37 H 1.08989 * 110.07518 * 87.95764 * 13 4 3 38 38 H 1.08993 * 110.20834 * 147.04374 * 16 14 13 39 39 H 1.09002 * 110.07349 * 25.41103 * 16 14 13 40 40 H 1.08004 * 120.40724 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.36497 * 180.24947 * 22 21 20 42 42 H 1.08003 * 119.11683 * 179.80842 * 23 22 21 43 43 H 1.07991 * 125.52730 * 180.02562 * 26 25 24 44 44 H 1.08009 * 126.21695 * 179.97438 * 27 26 25 45 45 H 1.09000 * 110.07177 * 150.73511 * 29 17 16 46 46 H 1.09007 * 110.07610 * 272.21532 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1211 1.4198 0.0000 4 7 2.5853 1.6761 1.3734 5 6 2.6210 2.8866 2.0127 6 1 2.2858 3.7771 1.5019 7 6 3.0889 2.9691 3.3169 8 7 3.4979 1.8838 3.9392 9 14 3.1383 4.6204 4.1887 10 1 1.7654 5.1817 4.2639 11 1 3.6745 4.4395 5.5617 12 1 4.0135 5.5528 3.4339 13 6 3.0040 0.3770 1.9250 14 6 2.1092 -0.6839 1.2627 15 1 1.3242 -1.0442 1.9276 16 6 2.9833 -1.8377 0.7348 17 7 3.2703 -1.5247 -0.6747 18 6 4.3824 -1.8520 -1.3622 19 8 4.5319 -1.4546 -2.5019 20 6 5.4165 -2.6908 -0.7333 21 6 5.0721 -3.7044 0.1523 22 6 6.0826 -4.4820 0.7248 23 6 7.3842 -4.2604 0.4402 24 7 7.7731 -3.2797 -0.4217 25 7 9.0311 -2.8628 -0.8752 26 6 8.8717 -1.8614 -1.7103 27 6 7.5156 -1.5881 -1.8327 28 6 6.8358 -2.4797 -1.0247 29 6 2.1026 -0.7901 -1.1885 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3632 0.5537 0.8658 32 1 -0.3634 0.4729 -0.9123 33 1 2.9590 1.4761 -0.6948 34 1 1.3551 2.1439 -0.2773 35 1 3.8246 1.9415 4.8508 36 1 2.8606 0.3657 3.0055 37 1 4.0499 0.1878 1.6839 38 1 2.4436 -2.7819 0.8062 39 1 3.9122 -1.8932 1.3024 40 1 4.0359 -3.8913 0.3929 41 1 5.8177 -5.2732 1.4105 42 1 8.1367 -4.8803 0.9048 43 1 9.6663 -1.3361 -2.2191 44 1 7.0727 -0.8188 -2.4479 45 1 2.4095 -0.1060 -1.9797 46 1 1.3575 -1.4897 -1.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091818944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 117.498449 kcal Electronic energy + Delta-G solvation = -30233.714031 eV Core-core repulsion = 26319.615463 eV Total energy + Delta-G solvation = -3914.098567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97561 -40.33404 -38.31943 -37.11421 -35.01644 -33.28719 -32.48458 -30.87580 -30.76497 -30.08476 -28.75231 -26.58422 -26.00255 -25.18260 -24.34059 -22.81588 -22.43251 -21.63515 -20.28734 -19.58053 -18.76603 -17.54486 -17.26681 -16.88350 -16.25962 -15.80599 -15.68203 -15.49651 -15.30237 -14.74897 -14.08558 -14.05003 -13.78664 -13.61396 -13.43803 -13.31805 -12.84634 -12.61448 -12.37938 -12.31078 -12.06127 -11.96150 -11.77983 -11.63169 -11.39061 -11.01826 -10.95540 -10.88021 -10.79131 -10.47439 -10.18690 -10.11414 -10.03823 -9.82912 -9.74188 -9.51602 -9.46821 -8.74327 -8.49985 -7.70263 -6.90903 -5.67700 -3.12271 0.29739 1.01410 2.07719 2.63587 2.68778 3.01138 3.38276 3.42801 3.43717 3.45480 4.10422 4.29474 4.44086 4.48781 4.52565 4.72904 4.85307 4.93859 5.18958 5.19974 5.32317 5.40346 5.48249 5.51707 5.53930 5.58197 5.63632 5.68758 5.81465 5.86932 5.94344 5.97481 6.00359 6.10538 6.14132 6.24024 6.34423 6.38233 6.50085 6.55028 6.62295 6.72473 6.77732 6.90733 7.40004 7.44702 7.56784 7.64406 7.78202 8.22027 8.35306 9.17510 9.78437 10.46018 11.33562 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.003770 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.357111 B = 7424.374601 C = 8506.739119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C 0.144 3.856 4 N -0.594 5.594 5 C -0.218 4.218 6 H 0.078 0.922 7 C -0.011 4.011 8 N -0.923 5.923 9 Si 0.916 3.084 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.144 3.856 14 C -0.115 4.115 15 H 0.088 0.912 16 C 0.103 3.897 17 N -0.602 5.602 18 C 0.587 3.413 19 O -0.533 6.533 20 C -0.115 4.115 21 C -0.044 4.044 22 C -0.176 4.176 23 C 0.134 3.866 24 N -0.284 5.284 25 N -0.319 5.319 26 C 0.081 3.919 27 C -0.259 4.259 28 C 0.130 3.870 29 C 0.121 3.879 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.043 0.957 35 H 0.253 0.747 36 H 0.124 0.876 37 H 0.006 0.994 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.169 0.831 43 H 0.195 0.805 44 H 0.161 0.839 45 H 0.081 0.919 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 -14.869 -6.561 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.346 4.346 6 H 0.096 0.904 7 C -0.206 4.206 8 N -0.572 5.572 9 Si 0.746 3.254 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.019 3.981 14 C -0.135 4.135 15 H 0.107 0.893 16 C -0.020 4.020 17 N -0.334 5.334 18 C 0.375 3.625 19 O -0.411 6.411 20 C -0.120 4.120 21 C -0.067 4.067 22 C -0.198 4.198 23 C 0.009 3.991 24 N -0.051 5.051 25 N -0.142 5.142 26 C -0.097 4.097 27 C -0.288 4.288 28 C 0.011 3.989 29 C -0.002 4.002 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.167 0.833 41 H 0.177 0.823 42 H 0.186 0.814 43 H 0.212 0.788 44 H 0.178 0.822 45 H 0.099 0.901 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.141 -15.255 -6.472 16.709 hybrid contribution -0.419 1.300 0.133 1.373 sum 1.722 -13.954 -6.339 15.423 Atomic orbital electron populations 1.21611 0.93075 1.01075 1.02129 1.22178 0.95590 0.97375 0.93812 1.21425 0.95788 0.92136 0.88893 1.44484 1.73981 1.04335 1.08964 1.19057 1.35886 0.84596 0.95082 0.90416 1.24752 1.01283 0.97577 0.97018 1.69581 1.49282 1.25774 1.12552 0.86129 0.77738 0.82786 0.78737 1.21122 1.21544 1.21222 1.21958 0.92230 0.81688 1.02252 1.23183 0.98335 0.95689 0.96315 0.89339 1.22488 1.00325 0.98022 0.81205 1.48275 1.17060 1.55390 1.12648 1.17189 0.80020 0.80033 0.85255 1.90796 1.77705 1.54557 1.18013 1.20319 0.90112 1.00108 1.01508 1.21883 1.00915 0.92423 0.91443 1.20631 0.90411 1.03810 1.04931 1.21495 0.97449 0.89493 0.90689 1.46185 1.06171 1.22896 1.29894 1.77830 0.96564 1.19298 1.20465 1.23910 0.97274 0.93737 0.94781 1.21413 0.92234 1.06280 1.08890 1.20092 0.88538 0.93911 0.96370 1.22121 0.86094 0.94871 0.97096 0.93053 0.91587 0.92857 0.96315 0.93853 0.93624 0.85917 0.97593 0.91863 0.90068 0.83267 0.82257 0.81408 0.78842 0.82174 0.90100 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.49 37.16 0.32 -1.34 16 2 C -0.09 -1.42 1.09 -152.72 -0.17 -1.59 16 3 C 0.14 2.98 6.39 -3.24 -0.02 2.96 16 4 N -0.59 -14.84 3.39 -171.13 -0.58 -15.42 16 5 C -0.22 -5.97 10.34 -15.06 -0.16 -6.12 16 6 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 7 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 8 N -0.92 -26.14 10.08 55.49 0.56 -25.58 16 9 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.14 3.32 5.71 -3.24 -0.02 3.30 16 14 C -0.11 -1.95 3.68 -88.68 -0.33 -2.28 16 15 H 0.09 1.40 7.88 -51.93 -0.41 0.99 16 16 C 0.10 1.44 4.60 -3.10 -0.01 1.43 16 17 N -0.60 -9.40 3.32 -172.73 -0.57 -9.97 16 18 C 0.59 9.95 7.55 -12.60 -0.10 9.86 16 19 O -0.53 -10.50 16.42 5.25 0.09 -10.41 16 20 C -0.12 -1.72 5.62 -102.68 -0.58 -2.29 16 21 C -0.04 -0.48 8.13 -38.75 -0.32 -0.79 16 22 C -0.18 -1.53 9.90 -40.14 -0.40 -1.92 16 23 C 0.13 1.38 11.12 -16.73 -0.19 1.20 16 24 N -0.28 -4.04 3.89 -9.41 -0.04 -4.08 16 25 N -0.32 -4.68 12.66 30.51 0.39 -4.29 16 26 C 0.08 1.08 11.95 -17.52 -0.21 0.87 16 27 C -0.26 -4.05 10.39 -39.36 -0.41 -4.45 16 28 C 0.13 2.06 6.82 -82.19 -0.56 1.50 16 29 C 0.12 1.82 5.97 -3.25 -0.02 1.81 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.02 0.42 7.39 -51.93 -0.38 0.04 16 34 H 0.04 0.86 7.85 -51.93 -0.41 0.46 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 36 H 0.12 3.18 5.45 -51.93 -0.28 2.90 16 37 H 0.01 0.16 7.41 -51.94 -0.38 -0.23 16 38 H 0.06 0.67 7.41 -51.93 -0.38 0.29 16 39 H 0.08 1.19 6.15 -51.93 -0.32 0.87 16 40 H 0.15 1.30 5.94 -52.48 -0.31 0.98 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.16 2.54 7.74 -52.48 -0.41 2.13 16 45 H 0.08 1.33 7.24 -51.93 -0.38 0.95 16 46 H 0.06 0.83 7.87 -51.92 -0.41 0.42 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -34.35 366.93 -9.06 -43.41 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.16 Total: 2.33 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.25 Total: 1.72 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.24 Total: -59.35 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.35 -9.06 -43.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091818944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.908 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds