Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53790 * 112.60334 * 2 1 4 4 N 1.47216 * 106.37549 * 103.51083 * 3 2 1 5 5 C 1.36938 * 126.70296 * 211.25801 * 4 3 2 6 6 H 1.07996 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00255 * 180.02562 * 5 4 3 8 8 N 1.31624 * 119.99634 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00260 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46991 * 59.99729 * 9 7 5 11 11 H 1.48500 * 109.47424 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47179 * 300.00146 * 9 7 5 13 13 C 1.47219 * 106.59574 * 31.27543 * 4 3 2 14 14 C 1.53781 * 106.37413 * 328.72776 * 13 4 3 15 15 H 1.09006 * 112.60548 * 256.48293 * 14 13 4 16 16 C 1.54066 * 109.51966 * 131.52993 * 14 13 4 17 17 N 1.47215 * 106.23095 * 266.26916 * 16 14 13 18 18 C 1.34769 * 126.70394 * 148.68855 * 17 16 14 19 19 O 1.21629 * 120.00433 * 184.86093 * 18 17 16 20 20 C 1.47258 * 119.99845 * 4.86040 * 18 17 16 21 21 C 1.38932 * 120.90798 * 34.90663 * 20 18 17 22 22 C 1.39769 * 119.19209 * 179.77634 * 21 20 18 23 23 C 1.35071 * 121.27388 * 0.44527 * 22 21 20 24 24 N 1.36227 * 121.77006 * 359.51840 * 23 22 21 25 25 N 1.40077 * 132.48924 * 180.25698 * 24 23 22 26 26 C 1.31362 * 108.88601 * 180.02562 * 25 24 23 27 27 C 1.38878 * 108.94055 * 0.02562 * 26 25 24 28 28 C 1.37192 * 120.18746 * 0.26804 * 24 23 22 29 29 C 1.47216 * 106.59297 * 328.42154 * 17 16 14 30 30 H 1.08997 * 109.46785 * 182.60325 * 1 2 3 31 31 H 1.09003 * 109.46581 * 302.60046 * 1 2 3 32 32 H 1.08997 * 109.47423 * 62.60111 * 1 2 3 33 33 H 1.08994 * 110.07213 * 222.73883 * 3 2 1 34 34 H 1.08998 * 110.07127 * 344.28565 * 3 2 1 35 35 H 0.97007 * 119.99424 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.07182 * 209.50084 * 13 4 3 37 37 H 1.08989 * 110.07518 * 87.95764 * 13 4 3 38 38 H 1.08993 * 110.20834 * 147.04374 * 16 14 13 39 39 H 1.09002 * 110.07349 * 25.41103 * 16 14 13 40 40 H 1.08004 * 120.40724 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.36497 * 180.24947 * 22 21 20 42 42 H 1.08003 * 119.11683 * 179.80842 * 23 22 21 43 43 H 1.07991 * 125.52730 * 180.02562 * 26 25 24 44 44 H 1.08009 * 126.21695 * 179.97438 * 27 26 25 45 45 H 1.09000 * 110.07177 * 150.73511 * 29 17 16 46 46 H 1.09007 * 110.07610 * 272.21532 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1211 1.4198 0.0000 4 7 2.5853 1.6761 1.3734 5 6 2.6210 2.8866 2.0127 6 1 2.2858 3.7771 1.5019 7 6 3.0889 2.9691 3.3169 8 7 3.4979 1.8838 3.9392 9 14 3.1383 4.6204 4.1887 10 1 1.7654 5.1817 4.2639 11 1 3.6745 4.4395 5.5617 12 1 4.0135 5.5528 3.4339 13 6 3.0040 0.3770 1.9250 14 6 2.1092 -0.6839 1.2627 15 1 1.3242 -1.0442 1.9276 16 6 2.9833 -1.8377 0.7348 17 7 3.2703 -1.5247 -0.6747 18 6 4.3824 -1.8520 -1.3622 19 8 4.5319 -1.4546 -2.5019 20 6 5.4165 -2.6908 -0.7333 21 6 5.0721 -3.7044 0.1523 22 6 6.0826 -4.4820 0.7248 23 6 7.3842 -4.2604 0.4402 24 7 7.7731 -3.2797 -0.4217 25 7 9.0311 -2.8628 -0.8752 26 6 8.8717 -1.8614 -1.7103 27 6 7.5156 -1.5881 -1.8327 28 6 6.8358 -2.4797 -1.0247 29 6 2.1026 -0.7901 -1.1885 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3632 0.5537 0.8658 32 1 -0.3634 0.4729 -0.9123 33 1 2.9590 1.4761 -0.6948 34 1 1.3551 2.1439 -0.2773 35 1 3.8246 1.9415 4.8508 36 1 2.8606 0.3657 3.0055 37 1 4.0499 0.1878 1.6839 38 1 2.4436 -2.7819 0.8062 39 1 3.9122 -1.8932 1.3024 40 1 4.0359 -3.8913 0.3929 41 1 5.8177 -5.2732 1.4105 42 1 8.1367 -4.8803 0.9048 43 1 9.6663 -1.3361 -2.2191 44 1 7.0727 -0.8188 -2.4479 45 1 2.4095 -0.1060 -1.9797 46 1 1.3575 -1.4897 -1.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091818944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 95.361909 kcal Electronic energy + Delta-G solvation = -30234.673943 eV Core-core repulsion = 26319.615463 eV Total energy + Delta-G solvation = -3915.058480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.98370 -41.64477 -39.68597 -38.06292 -36.64101 -34.69068 -33.75849 -32.49190 -31.74127 -31.65206 -29.79085 -27.92340 -27.55907 -26.72184 -25.48113 -24.02616 -23.68062 -22.72061 -21.97513 -20.76126 -20.13031 -18.83300 -18.52408 -18.33526 -17.37813 -16.99438 -16.82673 -16.69735 -16.48880 -16.36754 -15.59134 -15.52094 -15.11482 -14.97370 -14.84805 -14.36825 -14.08004 -13.84516 -13.51026 -13.43111 -13.36475 -13.20211 -13.12568 -12.97274 -12.87035 -12.67603 -12.65718 -12.29027 -12.05000 -11.97015 -11.82350 -11.59587 -11.49071 -11.38222 -11.16773 -11.06256 -10.78505 -10.43523 -9.73830 -8.93248 -8.71510 -7.76293 -5.24206 -0.63300 0.04648 1.11811 1.45254 1.47976 1.51464 1.54146 1.65852 1.89657 2.41297 2.47790 3.14095 3.28535 3.33697 3.39868 3.48844 3.67729 3.76824 3.89757 3.93456 3.95721 4.23737 4.28665 4.31362 4.39414 4.46979 4.53067 4.64039 4.73892 4.75593 4.77150 4.78639 4.87186 4.91049 4.94988 5.01748 5.06450 5.20821 5.21462 5.27473 5.35668 5.44847 5.48021 5.54626 5.62245 5.79220 5.82564 6.36155 6.42375 6.43019 6.99157 7.10154 7.76120 8.43622 9.21843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.003770 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.357111 B = 7424.374601 C = 8506.739119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C 0.140 3.860 4 N -0.618 5.618 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.061 4.061 8 N -0.944 5.944 9 Si 0.978 3.022 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.150 3.850 14 C -0.106 4.106 15 H 0.112 0.888 16 C 0.107 3.893 17 N -0.604 5.604 18 C 0.582 3.418 19 O -0.577 6.577 20 C -0.164 4.164 21 C -0.014 4.014 22 C -0.162 4.162 23 C 0.123 3.877 24 N -0.290 5.290 25 N -0.340 5.340 26 C 0.087 3.913 27 C -0.303 4.303 28 C 0.113 3.887 29 C 0.123 3.877 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.066 0.934 33 H -0.007 1.007 34 H 0.045 0.955 35 H 0.248 0.752 36 H 0.094 0.906 37 H -0.031 1.031 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.180 0.820 41 H 0.214 0.786 42 H 0.205 0.795 43 H 0.227 0.773 44 H 0.141 0.859 45 H 0.058 0.942 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -17.953 -5.318 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.078 4.078 3 C 0.014 3.986 4 N -0.341 5.341 5 C -0.368 4.368 6 H 0.094 0.906 7 C -0.254 4.254 8 N -0.594 5.594 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.025 3.975 14 C -0.126 4.126 15 H 0.130 0.870 16 C -0.015 4.015 17 N -0.335 5.335 18 C 0.372 3.628 19 O -0.458 6.458 20 C -0.170 4.170 21 C -0.037 4.037 22 C -0.183 4.183 23 C -0.001 4.001 24 N -0.057 5.057 25 N -0.163 5.163 26 C -0.090 4.090 27 C -0.332 4.332 28 C -0.007 4.007 29 C 0.000 4.000 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.011 0.989 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.112 0.888 37 H -0.013 1.013 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.198 0.802 41 H 0.231 0.769 42 H 0.222 0.778 43 H 0.243 0.757 44 H 0.158 0.842 45 H 0.076 0.924 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.455 -18.356 -5.227 19.091 hybrid contribution 0.116 2.247 -0.198 2.258 sum 0.571 -16.109 -5.426 17.008 Atomic orbital electron populations 1.21580 0.90211 1.03286 1.02055 1.22093 0.97560 0.94025 0.94081 1.21569 0.95029 0.95616 0.86396 1.44800 1.74226 1.04475 1.10628 1.19393 1.35901 0.85852 0.95634 0.90579 1.25532 1.01337 1.00827 0.97691 1.69842 1.49843 1.27307 1.12390 0.85166 0.78021 0.78990 0.77244 1.19885 1.21593 1.21260 1.21755 0.91642 0.83039 1.01102 1.23059 0.98136 0.94977 0.96447 0.86973 1.22601 1.00061 0.98953 0.79847 1.48357 1.16893 1.55066 1.13215 1.17587 0.80399 0.79906 0.84900 1.90755 1.78477 1.56580 1.20019 1.20247 0.89053 1.02692 1.04968 1.22405 1.03115 0.89862 0.88305 1.21303 0.88950 1.03800 1.04227 1.22466 0.99469 0.88620 0.89575 1.46480 1.05549 1.23411 1.30295 1.77733 0.97263 1.20011 1.21314 1.24364 0.97182 0.93270 0.94181 1.21436 0.93655 1.07420 1.10681 1.20364 0.89624 0.94226 0.96467 1.22155 0.86735 0.95256 0.95832 0.89436 0.93378 0.91491 0.98943 0.93650 0.94160 0.88809 1.01349 0.86175 0.90861 0.80249 0.76920 0.77839 0.75720 0.84154 0.92393 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 8.49 71.98 0.61 -2.12 16 2 C -0.08 -2.35 1.09 -51.02 -0.06 -2.41 16 3 C 0.14 5.95 6.39 86.51 0.55 6.50 16 4 N -0.62 -31.97 3.39 -695.33 -2.36 -34.33 16 5 C -0.24 -13.52 10.34 84.03 0.87 -12.65 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 7 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 8 N -0.94 -55.02 10.08 21.65 0.22 -54.80 16 9 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.15 7.09 5.71 86.51 0.49 7.58 16 14 C -0.11 -3.41 3.68 -9.54 -0.04 -3.45 16 15 H 0.11 3.15 7.88 -2.38 -0.02 3.13 16 16 C 0.11 2.70 4.60 86.60 0.40 3.10 16 17 N -0.60 -18.18 3.32 -818.64 -2.71 -20.89 16 18 C 0.58 20.10 7.55 86.62 0.65 20.76 16 19 O -0.58 -24.13 16.42 -4.12 -0.07 -24.20 16 20 C -0.16 -4.85 5.62 -18.61 -0.10 -4.95 16 21 C -0.01 -0.26 8.13 22.81 0.19 -0.07 16 22 C -0.16 -2.05 9.90 21.91 0.22 -1.84 16 23 C 0.12 2.16 11.12 83.28 0.93 3.09 16 24 N -0.29 -8.10 3.89 -183.70 -0.71 -8.82 16 25 N -0.34 -10.05 12.66 -57.40 -0.73 -10.77 16 26 C 0.09 2.45 11.95 84.92 1.01 3.47 16 27 C -0.30 -10.29 10.39 22.42 0.23 -10.06 16 28 C 0.11 3.70 6.82 40.43 0.28 3.98 16 29 C 0.12 3.52 5.97 86.50 0.52 4.04 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H -0.01 -0.34 7.39 -2.39 -0.02 -0.35 16 34 H 0.05 1.86 7.85 -2.39 -0.02 1.85 16 35 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 36 H 0.09 5.01 5.45 -2.39 -0.01 5.00 16 37 H -0.03 -1.67 7.41 -2.39 -0.02 -1.69 16 38 H 0.12 1.77 7.41 -2.39 -0.02 1.76 16 39 H 0.07 2.00 6.15 -2.39 -0.01 1.98 16 40 H 0.18 2.11 5.94 -2.91 -0.02 2.09 16 41 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.23 4.28 8.06 -2.92 -0.02 4.26 16 44 H 0.14 5.12 7.74 -2.91 -0.02 5.09 16 45 H 0.06 1.94 7.24 -2.39 -0.02 1.92 16 46 H 0.10 2.23 7.87 -2.38 -0.02 2.21 16 Total: -1.00 -83.51 366.93 3.89 -79.62 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.00 Total: 14.61 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 7.22 Total: 11.98 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -6.30 Total: -129.62 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.07 Total: -24.20 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -83.51 3.89 -79.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091818944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.983 kcal (2) G-P(sol) polarization free energy of solvation -83.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds