Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53781 * 111.86257 * 2 1 4 4 N 1.47216 * 106.37604 * 140.62322 * 3 2 1 5 5 C 1.36939 * 126.70143 * 148.72248 * 4 3 2 6 6 H 1.08005 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.38806 * 120.00112 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99855 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00363 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46848 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47469 * 119.99740 * 9 7 5 12 12 H 1.48504 * 109.46814 * 239.99665 * 9 7 5 13 13 C 1.46516 * 106.96920 * 329.55485 * 4 3 2 14 14 C 1.53774 * 106.73359 * 29.89671 * 13 4 3 15 15 H 1.08998 * 112.60445 * 220.37519 * 14 13 4 16 16 C 1.53788 * 109.34712 * 95.37219 * 14 13 4 17 17 N 1.47208 * 106.37975 * 228.52887 * 16 14 13 18 18 C 1.34775 * 126.70279 * 211.26891 * 17 16 14 19 19 O 1.21599 * 120.00078 * 183.73266 * 18 17 16 20 20 C 1.47511 * 120.00076 * 3.72981 * 18 17 16 21 21 C 1.41040 * 119.39585 * 145.88281 * 20 18 17 22 22 C 1.35186 * 121.65517 * 180.02562 * 21 20 18 23 23 C 1.41379 * 119.93473 * 359.97322 * 22 21 20 24 24 N 1.31923 * 134.39724 * 180.29785 * 23 22 21 25 25 N 1.39918 * 109.06460 * 180.10643 * 24 23 22 26 26 H 0.96997 * 124.98748 * 179.87780 * 25 24 23 27 27 C 1.33824 * 110.02616 * 359.60278 * 25 24 23 28 28 C 1.38540 * 107.83223 * 0.23359 * 27 25 24 29 29 C 1.38222 * 119.38995 * 325.85893 * 20 18 17 30 30 C 1.47219 * 106.59518 * 31.52425 * 17 16 14 31 31 H 1.09002 * 109.46952 * 302.05656 * 1 2 3 32 32 H 1.08995 * 109.47441 * 62.05815 * 1 2 3 33 33 H 1.09001 * 109.47249 * 182.06136 * 1 2 3 34 34 H 1.08998 * 110.07255 * 259.85249 * 3 2 1 35 35 H 1.09001 * 110.07067 * 21.33815 * 3 2 1 36 36 H 0.96996 * 119.99842 * 180.02562 * 8 7 5 37 37 H 1.09004 * 108.72138 * 271.18612 * 13 4 3 38 38 H 1.08997 * 111.06641 * 149.89272 * 13 4 3 39 39 H 1.09005 * 110.07182 * 109.29565 * 16 14 13 40 40 H 1.09000 * 110.11596 * 347.78721 * 16 14 13 41 41 H 1.07996 * 119.17244 * 359.97438 * 21 20 18 42 42 H 1.08002 * 120.03073 * 179.97438 * 22 21 20 43 43 H 1.07996 * 126.08410 * 180.26058 * 27 25 24 44 44 H 1.07998 * 120.33030 * 0.02576 * 29 20 18 45 45 H 1.08999 * 110.07323 * 87.69308 * 30 17 16 46 46 H 1.08999 * 110.07327 * 209.23533 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2704 1.4058 0.8961 5 6 4.4007 2.1710 0.7858 6 1 4.4967 2.8790 -0.0243 7 6 5.4236 2.0360 1.7143 8 7 5.3068 1.1729 2.7012 9 14 6.9652 3.0802 1.5643 10 1 6.8497 3.9656 0.3777 11 1 7.1231 3.9082 2.7868 12 1 8.1484 2.1964 1.4087 13 6 3.0043 0.3936 1.9214 14 6 2.1091 -0.6729 1.2687 15 1 1.3241 -1.0270 1.9368 16 6 2.9851 -1.8268 0.7525 17 7 2.5535 -2.0891 -0.6303 18 6 2.5682 -3.2768 -1.2671 19 8 2.2456 -3.3431 -2.4376 20 6 2.9757 -4.4963 -0.5442 21 6 2.3629 -5.7264 -0.8613 22 6 2.7009 -6.8716 -0.2274 23 6 3.6919 -6.8539 0.7808 24 7 4.2338 -7.7714 1.5586 25 7 5.1852 -7.1651 2.3861 26 1 5.7208 -7.6276 3.0495 27 6 5.2521 -5.8545 2.1239 28 6 4.3389 -5.5756 1.1200 29 6 3.9515 -4.4125 0.4312 30 6 2.1084 -0.7995 -1.1836 31 1 -0.3633 0.5455 0.8710 32 1 -0.3634 0.4815 -0.9078 33 1 -0.3634 -1.0270 0.0370 34 1 2.4093 1.7072 -1.0078 35 1 1.3568 2.1295 0.3725 36 1 6.0215 1.0788 3.3503 37 1 2.4789 0.8660 2.7514 38 1 3.9305 -0.0600 2.2738 39 1 2.8341 -2.7147 1.3664 40 1 4.0354 -1.5359 0.7678 41 1 1.6041 -5.7540 -1.6292 42 1 2.2144 -7.7991 -0.4909 43 1 5.9024 -5.1413 2.6083 44 1 4.4113 -3.4631 0.6625 45 1 2.9540 -0.2679 -1.6201 46 1 1.3383 -0.9617 -1.9377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091960610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 100.686657 kcal Electronic energy + Delta-G solvation = -29959.634629 eV Core-core repulsion = 26044.807048 eV Total energy + Delta-G solvation = -3914.827581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.47732 -40.25853 -38.50810 -36.65651 -34.99003 -33.10800 -32.20209 -30.89099 -30.85406 -30.01209 -29.24480 -26.40091 -25.84408 -25.22065 -24.57286 -22.93038 -22.01961 -20.93296 -20.10622 -19.48392 -18.69300 -18.32618 -17.24061 -16.82053 -16.37879 -15.84462 -15.43149 -15.07239 -14.74018 -14.50291 -14.28831 -14.10901 -13.84728 -13.62012 -13.33642 -13.22052 -12.84556 -12.74901 -12.40257 -12.09168 -11.93772 -11.75548 -11.64981 -11.58448 -11.33534 -10.96223 -10.86640 -10.78782 -10.52814 -10.49512 -10.16898 -10.12678 -9.89921 -9.81564 -9.65509 -9.57582 -8.97602 -8.76186 -8.31131 -7.77054 -6.94448 -5.73328 -3.17008 0.36740 1.44427 2.20217 2.45632 3.01984 3.28751 3.33858 3.40789 3.42037 3.81851 4.06953 4.41634 4.43007 4.68507 4.88033 4.98984 5.00646 5.10593 5.19924 5.22575 5.38798 5.42662 5.46999 5.58992 5.66348 5.70561 5.80239 5.91424 5.97901 6.03448 6.15923 6.19929 6.24786 6.25969 6.32452 6.34852 6.37083 6.48658 6.50268 6.64607 6.75273 6.76772 6.80361 6.88370 7.35620 7.36106 7.55281 7.74087 7.87856 8.29846 8.43004 9.14612 9.73972 10.40685 11.28256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003782 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.967661 B = 7402.006130 C = 9116.743458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.215 4.215 6 H 0.079 0.921 7 C -0.011 4.011 8 N -0.923 5.923 9 Si 0.914 3.086 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.145 3.855 14 C -0.117 4.117 15 H 0.078 0.922 16 C 0.105 3.895 17 N -0.606 5.606 18 C 0.576 3.424 19 O -0.551 6.551 20 C -0.162 4.162 21 C -0.028 4.028 22 C -0.118 4.118 23 C 0.120 3.880 24 N -0.315 5.315 25 N -0.425 5.425 26 H 0.444 0.556 27 C 0.105 3.895 28 C -0.218 4.218 29 C 0.004 3.996 30 C 0.126 3.874 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.023 0.977 36 H 0.251 0.749 37 H 0.008 0.992 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.195 0.805 44 H 0.142 0.858 45 H 0.072 0.928 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -13.375 0.459 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C 0.018 3.982 4 N -0.319 5.319 5 C -0.344 4.344 6 H 0.097 0.903 7 C -0.206 4.206 8 N -0.572 5.572 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C 0.019 3.981 14 C -0.138 4.138 15 H 0.097 0.903 16 C -0.017 4.017 17 N -0.337 5.337 18 C 0.366 3.634 19 O -0.431 6.431 20 C -0.167 4.167 21 C -0.051 4.051 22 C -0.139 4.139 23 C -0.035 4.035 24 N -0.143 5.143 25 N -0.124 5.124 26 H 0.289 0.711 27 C -0.054 4.054 28 C -0.228 4.228 29 C -0.017 4.017 30 C 0.004 3.996 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.212 0.788 44 H 0.160 0.840 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.513 -14.708 0.212 15.123 hybrid contribution 1.155 1.201 0.289 1.691 sum -2.358 -13.507 0.501 13.721 Atomic orbital electron populations 1.21662 0.93755 1.01176 1.01626 1.22230 0.94935 0.97293 0.94618 1.21384 0.90064 0.92014 0.94745 1.44357 1.15278 1.43077 1.29151 1.19162 0.92219 1.13948 1.09023 0.90314 1.24730 0.98743 0.99832 0.97299 1.69623 1.32906 1.38222 1.16489 0.85998 0.82842 0.79368 0.77320 1.20528 1.21760 1.21792 1.21827 0.99027 0.87623 0.89577 1.23101 0.97839 0.96438 0.96399 0.90331 1.22597 0.99749 0.98039 0.81315 1.48508 1.62955 1.07341 1.14931 1.17816 0.77737 0.81887 0.85950 1.90756 1.50515 1.86022 1.15804 1.19434 1.02350 0.94001 1.00868 1.20536 0.97415 0.90150 0.97008 1.19688 0.98474 0.98877 0.96861 1.21062 0.96106 0.90672 0.95636 1.77629 1.08255 1.18480 1.09908 1.46322 1.30049 1.06347 1.29648 0.71118 1.22963 0.98600 0.86954 0.96849 1.19531 1.04021 0.95420 1.03808 1.21165 0.93336 0.96813 0.90403 1.22133 0.99125 0.82615 0.95774 0.92317 0.92741 0.93039 0.93781 0.95891 0.93756 0.97442 0.85667 0.90990 0.89853 0.84761 0.85020 0.78780 0.84012 0.90977 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 8.45 37.15 0.31 -1.41 16 2 C -0.09 -1.47 1.09 -152.55 -0.17 -1.64 16 3 C 0.14 2.82 6.24 -3.25 -0.02 2.80 16 4 N -0.60 -14.00 3.37 -171.69 -0.58 -14.58 16 5 C -0.22 -5.60 10.33 -15.06 -0.16 -5.76 16 6 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 7 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 8 N -0.92 -24.63 10.06 55.49 0.56 -24.07 16 9 Si 0.91 20.96 29.55 -169.99 -5.02 15.93 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.15 3.17 5.46 -3.63 -0.02 3.15 16 14 C -0.12 -2.02 3.69 -88.83 -0.33 -2.35 16 15 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 16 C 0.11 1.70 4.64 -3.25 -0.02 1.68 16 17 N -0.61 -10.16 3.32 -172.61 -0.57 -10.73 16 18 C 0.58 9.91 7.54 -12.48 -0.09 9.81 16 19 O -0.55 -11.00 17.00 5.28 0.09 -10.91 16 20 C -0.16 -2.38 5.59 -105.06 -0.59 -2.97 16 21 C -0.03 -0.37 9.43 -39.61 -0.37 -0.74 16 22 C -0.12 -1.45 10.05 -39.47 -0.40 -1.85 16 23 C 0.12 1.57 7.49 -82.98 -0.62 0.95 16 24 N -0.31 -3.89 12.69 33.30 0.42 -3.47 16 25 N -0.42 -3.60 7.17 30.87 0.22 -3.38 16 26 H 0.44 1.97 8.96 -182.74 -1.64 0.33 16 27 C 0.11 0.92 12.09 -16.57 -0.20 0.72 16 28 C -0.22 -2.66 6.32 -105.23 -0.66 -3.33 16 29 C 0.00 0.05 7.85 -38.69 -0.30 -0.25 16 30 C 0.13 2.14 6.13 -3.07 -0.02 2.13 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.84 7.56 -51.93 -0.39 0.45 16 35 H 0.02 0.45 7.87 -51.93 -0.41 0.04 16 36 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.13 3.01 4.87 -51.93 -0.25 2.76 16 39 H 0.07 1.02 6.02 -51.93 -0.31 0.71 16 40 H 0.08 1.51 6.88 -51.93 -0.36 1.15 16 41 H 0.13 1.65 7.93 -52.49 -0.42 1.23 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.20 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.84 5.39 -52.49 -0.28 1.56 16 45 H 0.07 1.34 7.47 -51.93 -0.39 0.95 16 46 H 0.07 1.19 7.65 -51.93 -0.40 0.79 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -32.57 365.68 -10.46 -43.03 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.34 Total: 2.12 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -3.75 Total: 0.56 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.05 Total: -56.24 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.57 -10.46 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091960610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.712 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds