Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53781 * 111.86257 * 2 1 4 4 N 1.47216 * 106.37604 * 140.62322 * 3 2 1 5 5 C 1.36939 * 126.70143 * 148.72248 * 4 3 2 6 6 H 1.08005 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.38806 * 120.00112 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99855 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00363 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46848 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47469 * 119.99740 * 9 7 5 12 12 H 1.48504 * 109.46814 * 239.99665 * 9 7 5 13 13 C 1.46516 * 106.96920 * 329.55485 * 4 3 2 14 14 C 1.53774 * 106.73359 * 29.89671 * 13 4 3 15 15 H 1.08998 * 112.60445 * 220.37519 * 14 13 4 16 16 C 1.53788 * 109.34712 * 95.37219 * 14 13 4 17 17 N 1.47208 * 106.37975 * 228.52887 * 16 14 13 18 18 C 1.34775 * 126.70279 * 211.26891 * 17 16 14 19 19 O 1.21599 * 120.00078 * 183.73266 * 18 17 16 20 20 C 1.47511 * 120.00076 * 3.72981 * 18 17 16 21 21 C 1.41040 * 119.39585 * 145.88281 * 20 18 17 22 22 C 1.35186 * 121.65517 * 180.02562 * 21 20 18 23 23 C 1.41379 * 119.93473 * 359.97322 * 22 21 20 24 24 N 1.31923 * 134.39724 * 180.29785 * 23 22 21 25 25 N 1.39918 * 109.06460 * 180.10643 * 24 23 22 26 26 H 0.96997 * 124.98748 * 179.87780 * 25 24 23 27 27 C 1.33824 * 110.02616 * 359.60278 * 25 24 23 28 28 C 1.38540 * 107.83223 * 0.23359 * 27 25 24 29 29 C 1.38222 * 119.38995 * 325.85893 * 20 18 17 30 30 C 1.47219 * 106.59518 * 31.52425 * 17 16 14 31 31 H 1.09002 * 109.46952 * 302.05656 * 1 2 3 32 32 H 1.08995 * 109.47441 * 62.05815 * 1 2 3 33 33 H 1.09001 * 109.47249 * 182.06136 * 1 2 3 34 34 H 1.08998 * 110.07255 * 259.85249 * 3 2 1 35 35 H 1.09001 * 110.07067 * 21.33815 * 3 2 1 36 36 H 0.96996 * 119.99842 * 180.02562 * 8 7 5 37 37 H 1.09004 * 108.72138 * 271.18612 * 13 4 3 38 38 H 1.08997 * 111.06641 * 149.89272 * 13 4 3 39 39 H 1.09005 * 110.07182 * 109.29565 * 16 14 13 40 40 H 1.09000 * 110.11596 * 347.78721 * 16 14 13 41 41 H 1.07996 * 119.17244 * 359.97438 * 21 20 18 42 42 H 1.08002 * 120.03073 * 179.97438 * 22 21 20 43 43 H 1.07996 * 126.08410 * 180.26058 * 27 25 24 44 44 H 1.07998 * 120.33030 * 0.02576 * 29 20 18 45 45 H 1.08999 * 110.07323 * 87.69308 * 30 17 16 46 46 H 1.08999 * 110.07327 * 209.23533 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2704 1.4058 0.8961 5 6 4.4007 2.1710 0.7858 6 1 4.4967 2.8790 -0.0243 7 6 5.4236 2.0360 1.7143 8 7 5.3068 1.1729 2.7012 9 14 6.9652 3.0802 1.5643 10 1 6.8497 3.9656 0.3777 11 1 7.1231 3.9082 2.7868 12 1 8.1484 2.1964 1.4087 13 6 3.0043 0.3936 1.9214 14 6 2.1091 -0.6729 1.2687 15 1 1.3241 -1.0270 1.9368 16 6 2.9851 -1.8268 0.7525 17 7 2.5535 -2.0891 -0.6303 18 6 2.5682 -3.2768 -1.2671 19 8 2.2456 -3.3431 -2.4376 20 6 2.9757 -4.4963 -0.5442 21 6 2.3629 -5.7264 -0.8613 22 6 2.7009 -6.8716 -0.2274 23 6 3.6919 -6.8539 0.7808 24 7 4.2338 -7.7714 1.5586 25 7 5.1852 -7.1651 2.3861 26 1 5.7208 -7.6276 3.0495 27 6 5.2521 -5.8545 2.1239 28 6 4.3389 -5.5756 1.1200 29 6 3.9515 -4.4125 0.4312 30 6 2.1084 -0.7995 -1.1836 31 1 -0.3633 0.5455 0.8710 32 1 -0.3634 0.4815 -0.9078 33 1 -0.3634 -1.0270 0.0370 34 1 2.4093 1.7072 -1.0078 35 1 1.3568 2.1295 0.3725 36 1 6.0215 1.0788 3.3503 37 1 2.4789 0.8660 2.7514 38 1 3.9305 -0.0600 2.2738 39 1 2.8341 -2.7147 1.3664 40 1 4.0354 -1.5359 0.7678 41 1 1.6041 -5.7540 -1.6292 42 1 2.2144 -7.7991 -0.4909 43 1 5.9024 -5.1413 2.6083 44 1 4.4113 -3.4631 0.6625 45 1 2.9540 -0.2679 -1.6201 46 1 1.3383 -0.9617 -1.9377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091960610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 80.592828 kcal Electronic energy + Delta-G solvation = -29960.505963 eV Core-core repulsion = 26044.807048 eV Total energy + Delta-G solvation = -3915.698915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.36547 -41.60131 -39.87101 -37.70878 -36.59749 -34.62502 -33.28314 -32.42566 -31.79057 -31.59056 -30.24040 -27.76738 -27.41611 -26.74453 -25.59787 -24.29940 -23.19130 -22.04605 -21.54190 -20.69928 -20.11016 -19.14253 -18.68225 -18.29204 -17.48191 -17.14476 -16.85119 -16.51509 -15.94335 -15.85897 -15.54781 -15.30669 -15.19872 -14.89161 -14.64001 -14.37303 -14.16715 -13.87476 -13.81386 -13.51044 -13.27746 -13.18444 -12.94842 -12.81614 -12.71332 -12.55333 -12.44209 -12.31102 -11.89596 -11.81714 -11.56950 -11.45723 -11.43277 -11.25610 -11.19210 -10.99586 -10.67032 -9.91106 -9.67814 -8.83588 -8.70515 -7.70022 -5.15600 -0.51215 0.42207 1.33983 1.50451 1.52367 1.60698 1.78949 1.79663 2.00050 2.53427 2.79529 3.15031 3.36019 3.42535 3.60639 3.66365 3.78332 3.82787 4.01885 4.06056 4.16423 4.28225 4.32441 4.40431 4.41772 4.48999 4.52532 4.61493 4.73955 4.81127 4.87234 4.88362 5.00002 5.04423 5.10061 5.19210 5.23310 5.28434 5.31131 5.33059 5.46224 5.48473 5.56889 5.63541 5.71420 5.90194 6.20195 6.43299 6.50756 6.54695 7.09784 7.19889 7.83796 8.50109 9.29152 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003782 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.967661 B = 7402.006130 C = 9116.743458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C 0.141 3.859 4 N -0.615 5.615 5 C -0.232 4.232 6 H 0.076 0.924 7 C -0.056 4.056 8 N -0.940 5.940 9 Si 0.971 3.029 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.291 1.291 13 C 0.152 3.848 14 C -0.108 4.108 15 H 0.102 0.898 16 C 0.117 3.883 17 N -0.606 5.606 18 C 0.577 3.423 19 O -0.585 6.585 20 C -0.187 4.187 21 C -0.035 4.035 22 C -0.118 4.118 23 C 0.104 3.896 24 N -0.342 5.342 25 N -0.407 5.407 26 H 0.463 0.537 27 C 0.138 3.862 28 C -0.249 4.249 29 C 0.017 3.983 30 C 0.127 3.873 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.249 0.751 37 H -0.017 1.017 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.238 0.762 44 H 0.142 0.858 45 H 0.050 0.950 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -14.495 1.419 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.080 4.080 3 C 0.015 3.985 4 N -0.339 5.339 5 C -0.360 4.360 6 H 0.094 0.906 7 C -0.249 4.249 8 N -0.591 5.591 9 Si 0.800 3.200 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.218 1.218 13 C 0.026 3.974 14 C -0.129 4.129 15 H 0.120 0.880 16 C -0.005 4.005 17 N -0.336 5.336 18 C 0.369 3.631 19 O -0.467 6.467 20 C -0.192 4.192 21 C -0.058 4.058 22 C -0.139 4.139 23 C -0.050 4.050 24 N -0.170 5.170 25 N -0.107 5.107 26 H 0.312 0.688 27 C -0.023 4.023 28 C -0.258 4.258 29 C -0.004 4.004 30 C 0.005 3.995 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.001 0.999 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.167 0.833 43 H 0.254 0.746 44 H 0.159 0.841 45 H 0.068 0.932 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.356 -15.857 1.185 16.251 hybrid contribution 1.206 1.535 0.078 1.954 sum -2.149 -14.322 1.263 14.537 Atomic orbital electron populations 1.21622 0.91044 1.02153 1.02713 1.22150 0.96854 0.95052 0.93898 1.21529 0.89008 0.94026 0.93903 1.44582 1.15764 1.43330 1.30239 1.19416 0.93356 1.14311 1.08960 0.90636 1.25391 1.01054 1.01106 0.97357 1.69826 1.33337 1.39068 1.16826 0.85118 0.79800 0.77987 0.77062 1.19951 1.22095 1.21772 1.21619 0.98565 0.88147 0.89095 1.22992 0.97725 0.95451 0.96723 0.88015 1.22423 0.98186 0.98525 0.81372 1.48520 1.62849 1.07241 1.15030 1.18230 0.76848 0.82447 0.85612 1.90725 1.52219 1.86530 1.17274 1.19295 1.04259 0.93312 1.02286 1.20535 0.97790 0.90002 0.97478 1.19865 0.98323 0.99168 0.96496 1.21282 0.96478 0.91263 0.95985 1.77577 1.09544 1.19114 1.10804 1.46388 1.28922 1.06442 1.28942 0.68824 1.23605 0.96783 0.87285 0.94616 1.19759 1.05757 0.94823 1.05506 1.21134 0.92397 0.97251 0.89661 1.22054 0.98511 0.82826 0.96132 0.91680 0.91334 0.92029 0.93951 0.95392 0.94100 0.99859 0.87850 0.88583 0.92022 0.84596 0.83326 0.74584 0.84078 0.93160 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.45 71.98 0.61 -2.39 16 2 C -0.08 -2.50 1.09 -50.91 -0.06 -2.55 16 3 C 0.14 5.48 6.24 86.51 0.54 6.02 16 4 N -0.62 -29.37 3.37 -697.11 -2.35 -31.73 16 5 C -0.23 -12.23 10.33 84.03 0.87 -11.36 16 6 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 7 C -0.06 -2.97 5.49 84.86 0.47 -2.50 16 8 N -0.94 -50.82 10.06 21.65 0.22 -50.60 16 9 Si 0.97 43.29 29.55 68.60 2.03 45.32 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 13 C 0.15 6.69 5.46 86.64 0.47 7.16 16 14 C -0.11 -3.64 3.69 -9.63 -0.04 -3.68 16 15 H 0.10 2.98 7.88 -2.39 -0.02 2.97 16 16 C 0.12 3.70 4.64 86.51 0.40 4.11 16 17 N -0.61 -20.12 3.32 -818.26 -2.71 -22.84 16 18 C 0.58 19.85 7.54 86.69 0.65 20.50 16 19 O -0.59 -23.65 17.00 -4.03 -0.07 -23.72 16 20 C -0.19 -5.42 5.59 -20.15 -0.11 -5.54 16 21 C -0.04 -0.92 9.43 22.25 0.21 -0.71 16 22 C -0.12 -2.79 10.05 22.34 0.22 -2.56 16 23 C 0.10 2.56 7.49 42.27 0.32 2.88 16 24 N -0.34 -7.74 12.69 -48.55 -0.62 -8.36 16 25 N -0.41 -5.56 7.17 -56.25 -0.40 -5.96 16 26 H 0.46 2.43 8.96 -213.44 -1.91 0.51 16 27 C 0.14 1.91 12.09 84.46 1.02 2.93 16 28 C -0.25 -5.55 6.32 -20.26 -0.13 -5.68 16 29 C 0.02 0.43 7.85 22.85 0.18 0.60 16 30 C 0.13 4.32 6.13 86.62 0.53 4.85 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.63 7.56 -2.39 -0.02 1.62 16 35 H 0.03 1.07 7.87 -2.39 -0.02 1.05 16 36 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 37 H -0.02 -0.79 8.14 -2.38 -0.02 -0.81 16 38 H 0.10 5.07 4.87 -2.39 -0.01 5.06 16 39 H 0.10 2.58 6.02 -2.38 -0.01 2.56 16 40 H 0.06 2.25 6.88 -2.39 -0.02 2.23 16 41 H 0.14 3.37 7.93 -2.91 -0.02 3.35 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.24 1.17 8.06 -2.91 -0.02 1.14 16 44 H 0.14 3.53 5.39 -2.91 -0.02 3.51 16 45 H 0.05 1.91 7.47 -2.39 -0.02 1.89 16 46 H 0.08 2.55 7.65 -2.39 -0.02 2.53 16 Total: -1.00 -71.80 365.68 1.37 -70.43 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.88 Total: 15.37 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.16 Total: 12.09 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -5.87 Total: -119.49 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.07 Total: -23.72 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.80 1.37 -70.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091960610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.026 kcal (2) G-P(sol) polarization free energy of solvation -71.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds