Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.54026 * 112.12817 * 2 1 4 4 N 1.48335 * 104.53550 * 97.19991 * 3 2 1 5 5 C 1.36934 * 128.19899 * 221.77214 * 4 3 2 6 6 H 1.07999 * 120.00074 * 15.89194 * 5 4 3 7 7 C 1.38815 * 119.99907 * 195.89124 * 5 4 3 8 8 N 1.31613 * 119.99805 * 200.54851 * 7 5 4 9 9 Si 1.86797 * 119.99773 * 20.54862 * 7 5 4 10 10 H 1.48502 * 109.47165 * 265.01107 * 9 7 5 11 11 H 1.48500 * 109.47114 * 145.01256 * 9 7 5 12 12 H 1.48500 * 109.47328 * 25.00705 * 9 7 5 13 13 C 1.48334 * 103.59955 * 41.51057 * 4 3 2 14 14 C 1.54450 * 104.32694 * 318.45592 * 13 4 3 15 15 H 1.09001 * 112.29803 * 263.01348 * 14 13 4 16 16 C 1.53746 * 109.01749 * 137.92285 * 14 13 4 17 17 N 1.48245 * 105.90367 * 229.74391 * 16 14 13 18 18 C 1.34775 * 126.41572 * 211.09039 * 17 16 14 19 19 O 1.21566 * 120.00058 * 179.69231 * 18 17 16 20 20 C 1.47767 * 120.00105 * 359.69423 * 18 17 16 21 21 N 1.32746 * 120.05426 * 359.72223 * 20 18 17 22 22 C 1.31719 * 122.12998 * 179.76912 * 21 20 18 23 23 C 1.38303 * 121.68802 * 0.48244 * 22 21 20 24 24 C 1.39015 * 119.09704 * 359.78367 * 23 22 21 25 25 N 1.37189 * 134.65985 * 179.97438 * 24 23 22 26 26 H 0.97010 * 125.05602 * 0.06145 * 25 24 23 27 27 C 1.36718 * 109.88166 * 180.02562 * 25 24 23 28 28 C 1.34562 * 109.95608 * 359.97438 * 27 25 24 29 29 C 1.40399 * 120.05709 * 179.97438 * 20 18 17 30 30 C 1.47191 * 106.87965 * 30.83079 * 17 16 14 31 31 H 1.09007 * 109.46361 * 302.42071 * 1 2 3 32 32 H 1.08998 * 109.46667 * 62.41405 * 1 2 3 33 33 H 1.08990 * 109.47514 * 182.42396 * 1 2 3 34 34 H 1.09005 * 110.39164 * 338.40271 * 3 2 1 35 35 H 1.09002 * 110.32869 * 215.96340 * 3 2 1 36 36 H 0.96994 * 120.00203 * 5.20492 * 8 7 5 37 37 H 1.09000 * 110.46147 * 77.16413 * 13 4 3 38 38 H 1.08991 * 110.46485 * 199.73839 * 13 4 3 39 39 H 1.08994 * 110.06356 * 348.69989 * 16 14 13 40 40 H 1.09000 * 110.06136 * 110.21104 * 16 14 13 41 41 H 1.08003 * 119.15807 * 180.29131 * 22 21 20 42 42 H 1.08010 * 120.45431 * 179.80680 * 23 22 21 43 43 H 1.08000 * 125.02258 * 180.02562 * 27 25 24 44 44 H 1.08002 * 126.50559 * 180.02562 * 28 27 25 45 45 H 1.09000 * 110.06398 * 209.64475 * 30 17 16 46 46 H 1.09001 * 110.06477 * 88.13021 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1102 1.4268 0.0000 4 7 2.4172 1.7039 1.4245 5 6 2.2028 2.8591 2.1278 6 1 1.5378 3.6145 1.7358 7 6 2.8402 3.0594 3.3446 8 7 2.3591 3.9328 4.2035 9 14 4.3807 2.0892 3.7627 10 1 4.0104 0.8902 4.5567 11 1 5.3030 2.9420 4.5549 12 1 5.0535 1.6641 2.5090 13 6 3.0053 0.4311 1.9086 14 6 2.1221 -0.6645 1.2720 15 1 1.3492 -1.0204 1.9532 16 6 3.0230 -1.8032 0.7664 17 7 2.6006 -2.0658 -0.6302 18 6 2.6415 -3.2519 -1.2688 19 8 2.2584 -3.3362 -2.4194 20 6 3.1520 -4.4499 -0.5704 21 7 3.5758 -4.3579 0.6842 22 6 4.0344 -5.3998 1.3469 23 6 4.1103 -6.6533 0.7675 24 6 3.6873 -6.8175 -0.5465 25 7 3.6208 -7.8793 -1.4126 26 1 3.8947 -8.7863 -1.2043 27 6 3.1102 -7.4692 -2.6128 28 6 2.8326 -6.1532 -2.5681 29 6 3.1947 -5.6862 -1.2345 30 6 2.1238 -0.7865 -1.1801 31 1 -0.3632 0.5510 0.8676 32 1 -0.3632 0.4759 -0.9108 33 1 -0.3634 -1.0266 0.0435 34 1 1.3732 2.1365 -0.3761 35 1 3.0192 1.4660 -0.6003 36 1 1.5188 4.3813 4.0201 37 1 4.0365 0.3343 1.5689 38 1 2.9548 0.3771 2.9960 39 1 4.0673 -1.4920 0.7893 40 1 2.8835 -2.6918 1.3821 41 1 4.3625 -5.2713 2.3678 42 1 4.4927 -7.4934 1.3284 43 1 2.9523 -8.1072 -3.4697 44 1 2.4199 -5.5562 -3.3678 45 1 1.3568 -0.9660 -1.9336 46 1 2.9556 -0.2339 -1.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092026197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = 88.206305 kcal Electronic energy + Delta-G solvation = -29848.287616 eV Core-core repulsion = 25932.918846 eV Total energy + Delta-G solvation = -3915.368770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90156 -40.23455 -38.66891 -37.87840 -35.06735 -32.88209 -32.38213 -31.32711 -30.88114 -30.05809 -29.46812 -26.82205 -25.85080 -25.36344 -24.21286 -22.83064 -21.98380 -21.27865 -20.71963 -19.90830 -18.84491 -18.18798 -17.35603 -17.17329 -16.30072 -15.91367 -15.60700 -15.28859 -15.15202 -14.79895 -14.69070 -14.23618 -14.05503 -13.58024 -13.52583 -13.30018 -13.23754 -12.90689 -12.85173 -12.67493 -12.30291 -12.14588 -11.93007 -11.71335 -11.24796 -11.09623 -10.86918 -10.51130 -10.48704 -10.30555 -10.21780 -9.98700 -9.83890 -9.51545 -9.31172 -9.15693 -9.13519 -8.65419 -8.47292 -8.15833 -7.05245 -6.30320 -3.19405 0.26787 1.20115 2.32756 2.61397 2.78489 3.04627 3.45904 3.57733 3.71463 3.82727 4.04607 4.28194 4.46394 4.65664 4.66439 4.71683 4.83701 4.91028 5.03296 5.16369 5.18645 5.26985 5.32321 5.48950 5.56281 5.61058 5.66205 5.70273 5.75265 5.89702 5.92666 6.08262 6.09886 6.21411 6.27877 6.30333 6.35707 6.43243 6.46202 6.52400 6.55253 6.67213 6.73877 6.78947 6.86871 7.01935 7.60988 7.64759 7.71648 8.26093 8.34699 9.03923 9.57648 10.33436 11.19458 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.003100 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.421709 B = 9028.844088 C =10120.038245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C 0.138 3.862 4 N -0.604 5.604 5 C -0.314 4.314 6 H 0.076 0.924 7 C -0.018 4.018 8 N -0.924 5.924 9 Si 1.052 2.948 10 H -0.295 1.295 11 H -0.300 1.300 12 H -0.281 1.281 13 C 0.114 3.886 14 C -0.111 4.111 15 H 0.087 0.913 16 C 0.102 3.898 17 N -0.593 5.593 18 C 0.583 3.417 19 O -0.540 6.540 20 C 0.144 3.856 21 N -0.465 5.465 22 C 0.099 3.901 23 C -0.162 4.162 24 C 0.119 3.881 25 N -0.590 5.590 26 H 0.419 0.581 27 C 0.045 3.955 28 C -0.166 4.166 29 C -0.112 4.112 30 C 0.117 3.883 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.166 0.834 42 H 0.135 0.865 43 H 0.177 0.823 44 H 0.162 0.838 45 H 0.077 0.923 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -26.421 -10.761 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C 0.011 3.989 4 N -0.329 5.329 5 C -0.441 4.441 6 H 0.094 0.906 7 C -0.218 4.218 8 N -0.565 5.565 9 Si 0.884 3.116 10 H -0.223 1.223 11 H -0.229 1.229 12 H -0.208 1.208 13 C -0.012 4.012 14 C -0.132 4.132 15 H 0.106 0.894 16 C -0.021 4.021 17 N -0.324 5.324 18 C 0.370 3.630 19 O -0.417 6.417 20 C -0.001 4.001 21 N -0.178 5.178 22 C -0.055 4.055 23 C -0.185 4.185 24 C 0.004 3.996 25 N -0.194 5.194 26 H 0.256 0.744 27 C -0.080 4.080 28 C -0.192 4.192 29 C -0.120 4.120 30 C -0.005 4.005 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.183 0.817 42 H 0.153 0.847 43 H 0.194 0.806 44 H 0.180 0.820 45 H 0.096 0.904 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.445 -25.858 -9.793 27.864 hybrid contribution -0.932 -1.168 -1.321 1.994 sum 2.512 -27.025 -11.114 29.329 Atomic orbital electron populations 1.21581 0.93194 1.00897 1.02019 1.22263 0.95948 0.97172 0.93474 1.21791 0.97018 0.92176 0.87914 1.45455 1.72874 1.09411 1.05135 1.20089 1.25615 0.95387 1.03000 0.90579 1.25935 1.03568 0.99798 0.92478 1.70868 1.21704 1.29263 1.34659 0.83992 0.77429 0.74750 0.75429 1.22284 1.22861 1.20757 1.22298 0.94887 0.85725 0.98320 1.23133 0.98200 0.95126 0.96755 0.89437 1.22918 0.98006 0.99791 0.81368 1.48674 1.61162 1.07419 1.15114 1.17348 0.78995 0.81312 0.85296 1.90743 1.49444 1.84758 1.16749 1.20627 0.97340 0.91886 0.90212 1.67846 1.10788 1.32150 1.06988 1.22505 0.96053 0.86936 0.99971 1.21195 1.04993 1.00002 0.92294 1.18268 1.00880 0.87908 0.92538 1.41651 1.56673 1.09996 1.11056 0.74390 1.22095 1.00758 0.96310 0.88879 1.21950 1.07116 0.93626 0.96502 1.19815 1.03721 0.92514 0.95954 1.22210 0.98956 0.82985 0.96355 0.91635 0.92914 0.93370 0.92722 0.95195 0.92750 0.94265 0.91851 0.91240 0.86994 0.81664 0.84710 0.80557 0.82014 0.90445 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.59 37.16 0.32 -1.56 16 2 C -0.09 -1.46 1.07 -152.39 -0.16 -1.62 16 3 C 0.14 2.74 6.36 -2.50 -0.02 2.72 16 4 N -0.60 -14.55 3.21 -168.74 -0.54 -15.09 16 5 C -0.31 -8.87 10.63 -15.06 -0.16 -9.03 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 7 C -0.02 -0.52 5.47 -17.43 -0.10 -0.62 16 8 N -0.92 -28.87 13.70 55.49 0.76 -28.11 16 9 Si 1.05 26.32 24.97 -169.99 -4.24 22.07 16 10 H -0.29 -6.97 6.76 56.52 0.38 -6.59 16 11 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.28 -6.63 5.93 56.52 0.34 -6.29 16 13 C 0.11 2.41 4.23 -2.27 -0.01 2.40 16 14 C -0.11 -1.95 3.71 -88.28 -0.33 -2.27 16 15 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 16 C 0.10 1.58 5.86 -2.69 -0.02 1.57 16 17 N -0.59 -9.49 3.34 -171.94 -0.57 -10.07 16 18 C 0.58 9.55 7.86 -12.37 -0.10 9.46 16 19 O -0.54 -9.68 15.38 5.31 0.08 -9.60 16 20 C 0.14 2.08 6.76 -82.76 -0.56 1.52 16 21 N -0.46 -6.07 6.57 -9.66 -0.06 -6.13 16 22 C 0.10 0.96 11.13 -17.58 -0.20 0.77 16 23 C -0.16 -1.35 10.14 -39.27 -0.40 -1.74 16 24 C 0.12 1.17 7.34 -84.03 -0.62 0.55 16 25 N -0.59 -3.94 6.04 -10.59 -0.06 -4.00 16 26 H 0.42 1.29 8.96 -40.82 -0.37 0.92 16 27 C 0.04 0.32 11.82 -16.67 -0.20 0.12 16 28 C -0.17 -1.83 10.25 -37.83 -0.39 -2.22 16 29 C -0.11 -1.43 6.15 -104.88 -0.65 -2.07 16 30 C 0.12 1.85 6.24 -3.28 -0.02 1.83 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 1.08 7.90 -51.93 -0.41 0.67 16 35 H 0.03 0.58 7.16 -51.93 -0.37 0.21 16 36 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 37 H 0.04 0.83 5.91 -51.93 -0.31 0.52 16 38 H 0.06 1.43 5.09 -51.93 -0.26 1.17 16 39 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 40 H 0.11 1.65 5.52 -51.93 -0.29 1.36 16 41 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.16 1.88 7.23 -52.49 -0.38 1.50 16 45 H 0.08 1.19 7.63 -51.93 -0.40 0.80 16 46 H 0.07 1.11 7.11 -51.93 -0.37 0.75 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -35.17 359.57 -8.94 -44.11 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.13 Total: 1.60 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.59 Total: -0.21 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.48 Total: -63.40 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -4.24 Total: 22.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.17 -8.94 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092026197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.320 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds