Wall clock time and date at job start Sat Apr 11 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.54026 * 112.12817 * 2 1 4 4 N 1.48335 * 104.53550 * 97.19991 * 3 2 1 5 5 C 1.36934 * 128.19899 * 221.77214 * 4 3 2 6 6 H 1.07999 * 120.00074 * 15.89194 * 5 4 3 7 7 C 1.38815 * 119.99907 * 195.89124 * 5 4 3 8 8 N 1.31613 * 119.99805 * 200.54851 * 7 5 4 9 9 Si 1.86797 * 119.99773 * 20.54862 * 7 5 4 10 10 H 1.48502 * 109.47165 * 265.01107 * 9 7 5 11 11 H 1.48500 * 109.47114 * 145.01256 * 9 7 5 12 12 H 1.48500 * 109.47328 * 25.00705 * 9 7 5 13 13 C 1.48334 * 103.59955 * 41.51057 * 4 3 2 14 14 C 1.54450 * 104.32694 * 318.45592 * 13 4 3 15 15 H 1.09001 * 112.29803 * 263.01348 * 14 13 4 16 16 C 1.53746 * 109.01749 * 137.92285 * 14 13 4 17 17 N 1.48245 * 105.90367 * 229.74391 * 16 14 13 18 18 C 1.34775 * 126.41572 * 211.09039 * 17 16 14 19 19 O 1.21566 * 120.00058 * 179.69231 * 18 17 16 20 20 C 1.47767 * 120.00105 * 359.69423 * 18 17 16 21 21 N 1.32746 * 120.05426 * 359.72223 * 20 18 17 22 22 C 1.31719 * 122.12998 * 179.76912 * 21 20 18 23 23 C 1.38303 * 121.68802 * 0.48244 * 22 21 20 24 24 C 1.39015 * 119.09704 * 359.78367 * 23 22 21 25 25 N 1.37189 * 134.65985 * 179.97438 * 24 23 22 26 26 H 0.97010 * 125.05602 * 0.06145 * 25 24 23 27 27 C 1.36718 * 109.88166 * 180.02562 * 25 24 23 28 28 C 1.34562 * 109.95608 * 359.97438 * 27 25 24 29 29 C 1.40399 * 120.05709 * 179.97438 * 20 18 17 30 30 C 1.47191 * 106.87965 * 30.83079 * 17 16 14 31 31 H 1.09007 * 109.46361 * 302.42071 * 1 2 3 32 32 H 1.08998 * 109.46667 * 62.41405 * 1 2 3 33 33 H 1.08990 * 109.47514 * 182.42396 * 1 2 3 34 34 H 1.09005 * 110.39164 * 338.40271 * 3 2 1 35 35 H 1.09002 * 110.32869 * 215.96340 * 3 2 1 36 36 H 0.96994 * 120.00203 * 5.20492 * 8 7 5 37 37 H 1.09000 * 110.46147 * 77.16413 * 13 4 3 38 38 H 1.08991 * 110.46485 * 199.73839 * 13 4 3 39 39 H 1.08994 * 110.06356 * 348.69989 * 16 14 13 40 40 H 1.09000 * 110.06136 * 110.21104 * 16 14 13 41 41 H 1.08003 * 119.15807 * 180.29131 * 22 21 20 42 42 H 1.08010 * 120.45431 * 179.80680 * 23 22 21 43 43 H 1.08000 * 125.02258 * 180.02562 * 27 25 24 44 44 H 1.08002 * 126.50559 * 180.02562 * 28 27 25 45 45 H 1.09000 * 110.06398 * 209.64475 * 30 17 16 46 46 H 1.09001 * 110.06477 * 88.13021 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1102 1.4268 0.0000 4 7 2.4172 1.7039 1.4245 5 6 2.2028 2.8591 2.1278 6 1 1.5378 3.6145 1.7358 7 6 2.8402 3.0594 3.3446 8 7 2.3591 3.9328 4.2035 9 14 4.3807 2.0892 3.7627 10 1 4.0104 0.8902 4.5567 11 1 5.3030 2.9420 4.5549 12 1 5.0535 1.6641 2.5090 13 6 3.0053 0.4311 1.9086 14 6 2.1221 -0.6645 1.2720 15 1 1.3492 -1.0204 1.9532 16 6 3.0230 -1.8032 0.7664 17 7 2.6006 -2.0658 -0.6302 18 6 2.6415 -3.2519 -1.2688 19 8 2.2584 -3.3362 -2.4194 20 6 3.1520 -4.4499 -0.5704 21 7 3.5758 -4.3579 0.6842 22 6 4.0344 -5.3998 1.3469 23 6 4.1103 -6.6533 0.7675 24 6 3.6873 -6.8175 -0.5465 25 7 3.6208 -7.8793 -1.4126 26 1 3.8947 -8.7863 -1.2043 27 6 3.1102 -7.4692 -2.6128 28 6 2.8326 -6.1532 -2.5681 29 6 3.1947 -5.6862 -1.2345 30 6 2.1238 -0.7865 -1.1801 31 1 -0.3632 0.5510 0.8676 32 1 -0.3632 0.4759 -0.9108 33 1 -0.3634 -1.0266 0.0435 34 1 1.3732 2.1365 -0.3761 35 1 3.0192 1.4660 -0.6003 36 1 1.5188 4.3813 4.0201 37 1 4.0365 0.3343 1.5689 38 1 2.9548 0.3771 2.9960 39 1 4.0673 -1.4920 0.7893 40 1 2.8835 -2.6918 1.3821 41 1 4.3625 -5.2713 2.3678 42 1 4.4927 -7.4934 1.3284 43 1 2.9523 -8.1072 -3.4697 44 1 2.4199 -5.5562 -3.3678 45 1 1.3568 -0.9660 -1.9336 46 1 2.9556 -0.2339 -1.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092026197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:18 Heat of formation + Delta-G solvation = 63.993606 kcal Electronic energy + Delta-G solvation = -29849.337557 eV Core-core repulsion = 25932.918846 eV Total energy + Delta-G solvation = -3916.418711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.63012 -41.53929 -39.84106 -38.81038 -36.67322 -34.57404 -33.37823 -32.86676 -31.69387 -31.57256 -30.26481 -28.13113 -27.46238 -26.89213 -25.27462 -23.55868 -23.43010 -22.54229 -21.99618 -20.94277 -20.28491 -19.28817 -19.00376 -18.33577 -17.33446 -17.06745 -16.67894 -16.53387 -16.11731 -15.89557 -15.79081 -15.64731 -15.53026 -15.11555 -14.87682 -14.56349 -14.25116 -14.13427 -13.86153 -13.76805 -13.68197 -13.44940 -13.16181 -12.92546 -12.75975 -12.64482 -12.60944 -12.10629 -11.93563 -11.74417 -11.62069 -11.33707 -11.20727 -11.07761 -10.95787 -10.78393 -10.32362 -9.89305 -9.69602 -9.10317 -8.86340 -8.61488 -5.42205 -0.54378 0.46602 1.44989 1.57865 1.58414 1.74314 1.81277 1.86448 2.09466 2.59124 2.94548 3.06201 3.10445 3.27891 3.45051 3.58332 3.72794 3.85626 3.86839 4.04710 4.11523 4.16373 4.21528 4.33528 4.39296 4.41866 4.51936 4.59204 4.66082 4.70603 4.74726 4.84407 4.90212 4.94573 4.95485 5.05511 5.07371 5.09153 5.18926 5.25477 5.31971 5.40511 5.51377 5.59915 5.60931 5.88111 6.11564 6.45263 6.58866 6.79979 6.81551 7.13505 7.44412 8.21889 8.90410 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.003100 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.421709 B = 9028.844088 C =10120.038245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C 0.136 3.864 4 N -0.627 5.627 5 C -0.300 4.300 6 H 0.044 0.956 7 C -0.075 4.075 8 N -0.961 5.961 9 Si 1.094 2.906 10 H -0.273 1.273 11 H -0.309 1.309 12 H -0.259 1.259 13 C 0.111 3.889 14 C -0.104 4.104 15 H 0.090 0.910 16 C 0.115 3.885 17 N -0.597 5.597 18 C 0.580 3.420 19 O -0.566 6.566 20 C 0.101 3.899 21 N -0.480 5.480 22 C 0.080 3.920 23 C -0.135 4.135 24 C 0.107 3.893 25 N -0.572 5.572 26 H 0.440 0.560 27 C 0.089 3.911 28 C -0.222 4.222 29 C -0.132 4.132 30 C 0.123 3.877 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.248 0.752 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.195 0.805 42 H 0.177 0.823 43 H 0.223 0.777 44 H 0.143 0.857 45 H 0.081 0.919 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -31.328 -11.258 33.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C 0.011 3.989 4 N -0.352 5.352 5 C -0.428 4.428 6 H 0.062 0.938 7 C -0.268 4.268 8 N -0.605 5.605 9 Si 0.920 3.080 10 H -0.199 1.199 11 H -0.238 1.238 12 H -0.184 1.184 13 C -0.014 4.014 14 C -0.125 4.125 15 H 0.108 0.892 16 C -0.008 4.008 17 N -0.328 5.328 18 C 0.369 3.631 19 O -0.446 6.446 20 C -0.042 4.042 21 N -0.193 5.193 22 C -0.074 4.074 23 C -0.157 4.157 24 C -0.009 4.009 25 N -0.178 5.178 26 H 0.282 0.718 27 C -0.038 4.038 28 C -0.248 4.248 29 C -0.141 4.141 30 C 0.000 4.000 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.142 0.858 41 H 0.212 0.788 42 H 0.194 0.806 43 H 0.239 0.761 44 H 0.160 0.840 45 H 0.099 0.901 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.969 -30.825 -10.322 32.885 hybrid contribution -1.448 0.221 -1.285 1.949 sum 3.521 -30.604 -11.607 32.920 Atomic orbital electron populations 1.21521 0.92262 1.01457 1.01830 1.22152 0.96595 0.95288 0.93944 1.21951 0.97445 0.93804 0.85729 1.45501 1.73386 1.09289 1.07072 1.19935 1.23803 0.96127 1.02941 0.93802 1.27133 1.06087 1.00726 0.92869 1.70973 1.21834 1.31566 1.36120 0.83463 0.73942 0.74269 0.76343 1.19942 1.23794 1.18394 1.22408 0.95821 0.85337 0.97831 1.23042 0.97993 0.94744 0.96717 0.89152 1.22800 0.97290 0.99298 0.81385 1.48680 1.61479 1.07422 1.15178 1.17801 0.78322 0.81843 0.85147 1.90708 1.50679 1.85247 1.17922 1.20312 1.00900 0.91637 0.91349 1.67654 1.11001 1.33984 1.06623 1.23060 0.96266 0.86954 1.01081 1.21626 1.01923 1.00617 0.91557 1.18469 1.01198 0.87883 0.93330 1.41687 1.55429 1.10418 1.10217 0.71827 1.22676 0.96374 0.95201 0.89588 1.21941 1.11004 0.95582 0.96226 1.20130 1.03878 0.93058 0.97063 1.22097 0.99106 0.83105 0.95698 0.93709 0.91414 0.92195 0.93259 0.94135 0.94294 0.93309 0.93128 0.91187 0.85792 0.78805 0.80553 0.76101 0.83966 0.90100 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.50 8.59 71.98 0.62 -2.88 16 2 C -0.08 -2.57 1.07 -50.81 -0.05 -2.62 16 3 C 0.14 5.39 6.36 86.37 0.55 5.94 16 4 N -0.63 -30.33 3.21 -687.76 -2.21 -32.53 16 5 C -0.30 -17.43 10.63 84.03 0.89 -16.54 16 6 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 7 C -0.07 -4.48 5.47 84.86 0.46 -4.02 16 8 N -0.96 -62.19 13.70 21.65 0.30 -61.89 16 9 Si 1.09 53.29 24.97 68.60 1.71 55.01 16 10 H -0.27 -12.23 6.76 99.48 0.67 -11.55 16 11 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 12 H -0.26 -11.53 5.93 99.48 0.59 -10.94 16 13 C 0.11 4.59 4.23 86.52 0.37 4.96 16 14 C -0.10 -3.54 3.71 -9.28 -0.03 -3.57 16 15 H 0.09 3.04 7.93 -2.39 -0.02 3.02 16 16 C 0.11 3.41 5.86 86.29 0.51 3.92 16 17 N -0.60 -18.74 3.34 -816.16 -2.73 -21.47 16 18 C 0.58 19.10 7.86 86.76 0.68 19.78 16 19 O -0.57 -20.85 15.38 -3.92 -0.06 -20.91 16 20 C 0.10 2.87 6.76 42.05 0.28 3.16 16 21 N -0.48 -11.76 6.57 -184.49 -1.21 -12.97 16 22 C 0.08 1.32 11.13 84.73 0.94 2.26 16 23 C -0.13 -1.68 10.14 22.47 0.23 -1.46 16 24 C 0.11 1.75 7.34 39.24 0.29 2.03 16 25 N -0.57 -5.17 6.04 -187.43 -1.13 -6.30 16 26 H 0.44 0.34 8.96 -92.70 -0.83 -0.49 16 27 C 0.09 0.95 11.82 83.09 0.98 1.93 16 28 C -0.22 -4.70 10.25 23.40 0.24 -4.46 16 29 C -0.13 -3.25 6.15 -20.03 -0.12 -3.37 16 30 C 0.12 3.77 6.24 86.50 0.54 4.31 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.97 7.90 -2.38 -0.02 1.95 16 35 H 0.04 1.54 7.16 -2.39 -0.02 1.52 16 36 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 37 H 0.05 1.95 5.91 -2.39 -0.01 1.93 16 38 H 0.05 2.22 5.09 -2.39 -0.01 2.21 16 39 H 0.07 2.09 7.11 -2.39 -0.02 2.07 16 40 H 0.12 3.46 5.52 -2.39 -0.01 3.44 16 41 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 43 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.14 3.46 7.23 -2.91 -0.02 3.44 16 45 H 0.08 2.44 7.63 -2.39 -0.02 2.43 16 46 H 0.07 2.24 7.11 -2.39 -0.02 2.22 16 Total: -1.00 -81.28 359.57 2.05 -79.23 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.01 Total: 12.46 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 7.37 Total: 9.38 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -6.98 Total: -135.16 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.71 Total: 55.01 kcal Total: -81.28 2.05 -79.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092026197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.223 kcal (2) G-P(sol) polarization free energy of solvation -81.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds