Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48501 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46969 * 300.00054 * 3 2 1 6 6 H 1.48491 * 109.47241 * 60.00358 * 3 2 1 7 7 C 1.38807 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00389 * 164.51077 * 7 2 1 9 9 N 1.36940 * 120.00224 * 344.51183 * 7 2 1 10 10 C 1.47007 * 121.36942 * 335.97019 * 9 7 2 11 11 C 1.50322 * 109.16624 * 222.97071 * 10 9 7 12 12 C 1.29459 * 123.65035 * 349.01965 * 11 10 9 13 13 C 1.50700 * 117.69382 * 180.86162 * 12 11 10 14 14 C 1.52995 * 109.47111 * 95.00545 * 13 12 11 15 15 N 1.46500 * 109.46881 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00002 * 179.97438 * 15 14 13 17 17 O 1.21653 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.47066 * 120.00311 * 179.97438 * 16 15 14 19 19 C 1.35911 * 125.42548 * 179.97438 * 18 16 15 20 20 C 1.41435 * 107.67255 * 180.02562 * 19 18 16 21 21 C 1.39842 * 134.34201 * 179.97438 * 20 19 18 22 22 N 1.31557 * 120.03766 * 180.02562 * 21 20 19 23 23 C 1.32370 * 122.32129 * 359.97438 * 22 21 20 24 24 C 1.36636 * 121.64732 * 0.02562 * 23 22 21 25 25 C 1.39444 * 119.01399 * 359.97438 * 24 23 22 26 26 N 1.36870 * 134.33459 * 179.97438 * 25 24 23 27 27 H 0.97005 * 125.58409 * 359.76683 * 26 25 24 28 28 C 1.49966 * 124.60906 * 1.14155 * 12 11 10 29 29 C 1.47332 * 121.37911 * 155.99627 * 9 7 2 30 30 H 0.97004 * 120.00445 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.52300 * 103.06414 * 10 9 7 32 32 H 1.08998 * 109.52519 * 342.87769 * 10 9 7 33 33 H 1.07998 * 118.17523 * 169.00670 * 11 10 9 34 34 H 1.09001 * 109.47115 * 335.00116 * 13 12 11 35 35 H 1.09002 * 109.47078 * 215.00592 * 13 12 11 36 36 H 1.09001 * 109.47481 * 59.99796 * 14 13 12 37 37 H 1.09005 * 109.46846 * 299.99303 * 14 13 12 38 38 H 0.96996 * 120.00074 * 0.02562 * 15 14 13 39 39 H 1.07993 * 126.15981 * 0.04460 * 19 18 16 40 40 H 1.07999 * 119.98172 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.17476 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.49619 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.31480 * 101.00899 * 28 12 11 44 44 H 1.08993 * 109.31614 * 220.42983 * 28 12 11 45 45 H 1.09007 * 109.77782 * 237.78856 * 29 9 7 46 46 H 1.09002 * 109.77888 * 358.59347 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2189 -0.2503 9 7 1.3630 -2.3667 0.3156 10 6 0.1446 -2.3660 1.1382 11 6 0.2249 -3.4838 2.1401 12 6 1.1207 -4.4177 2.1026 13 6 1.0643 -5.4853 3.1648 14 6 0.2876 -6.6920 2.6343 15 7 0.2333 -7.7300 3.6667 16 6 -0.4053 -8.8913 3.4218 17 8 -0.9362 -9.0777 2.3432 18 6 -0.4593 -9.9336 4.4579 19 6 -1.0711 -11.1404 4.3301 20 6 -0.8941 -11.8423 5.5452 21 6 -1.2846 -13.1011 6.0127 22 7 -0.9588 -13.4821 7.2290 23 6 -0.2622 -12.7113 8.0493 24 6 0.1611 -11.4666 7.6772 25 6 -0.1499 -11.0001 6.4004 26 7 0.1044 -9.8418 5.7171 27 1 0.5956 -9.0795 6.0614 28 6 2.2140 -4.5088 1.0802 29 6 1.8591 -3.6720 -0.1541 30 1 -0.4851 0.8400 0.0004 31 1 -0.7265 -2.5115 0.4992 32 1 0.0587 -1.4136 1.6613 33 1 -0.5051 -3.5091 2.9355 34 1 0.5641 -5.0915 4.0495 35 1 2.0772 -5.7915 3.4262 36 1 0.7878 -7.0858 1.7495 37 1 -0.7254 -6.3857 2.3730 38 1 0.6564 -7.5812 4.5268 39 1 -1.5973 -11.4990 3.4579 40 1 -1.8539 -13.7610 5.3748 41 1 -0.0225 -13.0755 9.0374 42 1 0.7281 -10.8532 8.3617 43 1 3.1444 -4.1418 1.5136 44 1 2.3440 -5.5493 0.7830 45 1 1.0847 -4.1739 -0.7344 46 1 2.7476 -3.5293 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160485921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 68.995140 kcal Electronic energy + Delta-G solvation = -27445.646893 eV Core-core repulsion = 23529.445064 eV Total energy + Delta-G solvation = -3916.201829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.31260 -39.91837 -38.32878 -37.90295 -35.66292 -33.73043 -32.87341 -31.66658 -31.07965 -30.00322 -29.74101 -28.72354 -25.86503 -24.59146 -23.33449 -23.06677 -22.57926 -21.88868 -21.06821 -20.56284 -19.20052 -18.02713 -17.64465 -16.51421 -16.06900 -16.01555 -15.90510 -15.58416 -15.25951 -14.98195 -14.83320 -14.50175 -14.21958 -14.09873 -13.85885 -13.66099 -13.56515 -13.39828 -13.10017 -12.69807 -12.30436 -12.10593 -11.97402 -11.66615 -11.48598 -11.11343 -10.95837 -10.77628 -10.59441 -10.58415 -10.31945 -10.25523 -9.98473 -9.84571 -9.60027 -9.47093 -9.29757 -8.69295 -8.44972 -7.98870 -6.75684 -5.81485 -3.20357 0.16037 1.05457 1.58305 2.25398 2.60788 2.92436 2.95221 3.35235 3.42898 3.44962 3.48182 4.04458 4.07471 4.26327 4.45959 4.47172 4.60983 4.79715 4.93142 4.98095 5.04118 5.16512 5.27159 5.36644 5.37093 5.47718 5.52999 5.55498 5.69204 5.82467 5.88658 5.90120 6.02717 6.06657 6.11489 6.16411 6.31932 6.33988 6.50637 6.69056 6.74525 6.86755 7.05805 7.18424 7.27958 7.35619 7.63999 7.72354 7.73861 7.83379 8.36357 9.17912 9.80735 10.39137 11.28922 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.001622 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.454744 B =17256.802446 C =17534.657280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.195 3.805 11 C -0.143 4.143 12 C -0.145 4.145 13 C -0.092 4.092 14 C 0.123 3.877 15 N -0.725 5.725 16 C 0.580 3.420 17 O -0.514 6.514 18 C 0.018 3.982 19 C -0.088 4.088 20 C -0.176 4.176 21 C 0.179 3.821 22 N -0.507 5.507 23 C 0.106 3.894 24 C -0.182 4.182 25 C 0.141 3.859 26 N -0.570 5.570 27 H 0.421 0.579 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.394 0.606 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.134 0.866 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.025 0.975 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -23.055 15.972 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.163 4.163 12 C -0.146 4.146 13 C -0.129 4.129 14 C 0.001 3.999 15 N -0.376 5.376 16 C 0.365 3.635 17 O -0.389 6.389 18 C -0.091 4.091 19 C -0.115 4.115 20 C -0.183 4.183 21 C 0.011 3.989 22 N -0.217 5.217 23 C -0.042 4.042 24 C -0.205 4.205 25 C 0.023 3.977 26 N -0.175 5.175 27 H 0.259 0.741 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.227 0.773 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.175 0.825 42 H 0.152 0.848 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.387 -23.637 15.509 28.273 hybrid contribution 1.155 2.316 0.527 2.641 sum 0.768 -21.321 16.036 26.690 Atomic orbital electron populations 1.70023 1.05174 1.25375 1.54878 1.24991 0.95390 0.98287 1.01305 0.86187 0.79228 0.83910 0.77260 1.20326 1.21725 1.21632 1.19230 0.92240 0.84360 1.41635 0.91338 1.44138 1.29250 1.01175 1.57305 1.19718 0.88713 0.94733 0.89785 1.23143 0.96525 0.97316 0.99315 1.20202 0.99502 0.96575 0.98272 1.20915 0.99901 0.94109 0.98016 1.21561 1.01763 0.86359 0.90213 1.46020 1.56397 1.16627 1.18586 1.17141 0.79213 0.80992 0.86132 1.90899 1.45420 1.79077 1.23544 1.20365 1.04671 0.98152 0.85933 1.20920 1.00991 0.91786 0.97838 1.19244 1.05709 0.97513 0.95836 1.22567 0.93407 0.91390 0.91496 1.67689 1.14112 1.35614 1.04244 1.22132 0.93322 0.89657 0.99043 1.20819 1.06617 0.99008 0.94038 1.18383 0.98220 0.86941 0.94158 1.41867 1.48155 1.15571 1.11945 0.74096 1.20791 0.96502 0.99025 0.96683 1.20993 0.97377 0.87228 0.92804 0.93664 0.94320 0.89103 0.89081 0.91534 0.91449 0.90693 0.90706 0.77289 0.81873 0.81985 0.82462 0.84840 0.91921 0.92917 0.95742 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.14 11.08 55.49 0.61 -25.53 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.55 29.58 -169.99 -5.03 16.53 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.69 9.71 -15.06 -0.15 -6.83 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 N -0.60 -14.84 3.01 -173.56 -0.52 -15.36 16 10 C 0.20 4.62 5.23 -5.10 -0.03 4.59 16 11 C -0.14 -2.67 9.47 -35.78 -0.34 -3.01 16 12 C -0.14 -2.36 5.11 -100.99 -0.52 -2.88 16 13 C -0.09 -1.07 5.32 -27.89 -0.15 -1.22 16 14 C 0.12 1.43 5.66 -4.04 -0.02 1.41 16 15 N -0.73 -6.68 5.55 -61.50 -0.34 -7.02 16 16 C 0.58 6.48 7.80 -12.68 -0.10 6.39 16 17 O -0.51 -7.75 16.84 5.23 0.09 -7.67 16 18 C 0.02 0.16 6.97 -82.22 -0.57 -0.41 16 19 C -0.09 -0.80 10.53 -39.20 -0.41 -1.21 16 20 C -0.18 -1.53 6.21 -106.94 -0.66 -2.19 16 21 C 0.18 1.43 11.29 -17.07 -0.19 1.24 16 22 N -0.51 -4.49 10.33 -13.18 -0.14 -4.63 16 23 C 0.11 0.74 11.09 -17.90 -0.20 0.54 16 24 C -0.18 -1.16 10.09 -39.71 -0.40 -1.56 16 25 C 0.14 1.11 7.32 -84.03 -0.62 0.50 16 26 N -0.57 -3.85 6.05 -7.31 -0.04 -3.89 16 27 H 0.42 1.57 8.12 -40.82 -0.33 1.24 16 28 C -0.09 -1.54 5.95 -28.09 -0.17 -1.71 16 29 C 0.14 2.95 6.59 -3.44 -0.02 2.93 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.09 2.39 6.41 -51.93 -0.33 2.05 16 33 H 0.09 1.49 7.73 -52.49 -0.41 1.08 16 34 H 0.07 0.71 7.78 -51.93 -0.40 0.31 16 35 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.39 2.36 7.53 -40.82 -0.31 2.05 16 39 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.77 8.10 -51.93 -0.42 0.34 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -33.65 383.94 -10.60 -44.25 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.39 Total: 1.11 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -4.63 Total: -3.57 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.43 Total: -56.43 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.65 -10.60 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160485921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.249 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds