Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48501 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46969 * 300.00054 * 3 2 1 6 6 H 1.48491 * 109.47241 * 60.00358 * 3 2 1 7 7 C 1.38807 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00389 * 164.51077 * 7 2 1 9 9 N 1.36940 * 120.00224 * 344.51183 * 7 2 1 10 10 C 1.47007 * 121.36942 * 335.97019 * 9 7 2 11 11 C 1.50322 * 109.16624 * 222.97071 * 10 9 7 12 12 C 1.29459 * 123.65035 * 349.01965 * 11 10 9 13 13 C 1.50700 * 117.69382 * 180.86162 * 12 11 10 14 14 C 1.52995 * 109.47111 * 95.00545 * 13 12 11 15 15 N 1.46500 * 109.46881 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00002 * 179.97438 * 15 14 13 17 17 O 1.21653 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.47066 * 120.00311 * 179.97438 * 16 15 14 19 19 C 1.35911 * 125.42548 * 179.97438 * 18 16 15 20 20 C 1.41435 * 107.67255 * 180.02562 * 19 18 16 21 21 C 1.39842 * 134.34201 * 179.97438 * 20 19 18 22 22 N 1.31557 * 120.03766 * 180.02562 * 21 20 19 23 23 C 1.32370 * 122.32129 * 359.97438 * 22 21 20 24 24 C 1.36636 * 121.64732 * 0.02562 * 23 22 21 25 25 C 1.39444 * 119.01399 * 359.97438 * 24 23 22 26 26 N 1.36870 * 134.33459 * 179.97438 * 25 24 23 27 27 H 0.97005 * 125.58409 * 359.76683 * 26 25 24 28 28 C 1.49966 * 124.60906 * 1.14155 * 12 11 10 29 29 C 1.47332 * 121.37911 * 155.99627 * 9 7 2 30 30 H 0.97004 * 120.00445 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.52300 * 103.06414 * 10 9 7 32 32 H 1.08998 * 109.52519 * 342.87769 * 10 9 7 33 33 H 1.07998 * 118.17523 * 169.00670 * 11 10 9 34 34 H 1.09001 * 109.47115 * 335.00116 * 13 12 11 35 35 H 1.09002 * 109.47078 * 215.00592 * 13 12 11 36 36 H 1.09001 * 109.47481 * 59.99796 * 14 13 12 37 37 H 1.09005 * 109.46846 * 299.99303 * 14 13 12 38 38 H 0.96996 * 120.00074 * 0.02562 * 15 14 13 39 39 H 1.07993 * 126.15981 * 0.04460 * 19 18 16 40 40 H 1.07999 * 119.98172 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.17476 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.49619 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.31480 * 101.00899 * 28 12 11 44 44 H 1.08993 * 109.31614 * 220.42983 * 28 12 11 45 45 H 1.09007 * 109.77782 * 237.78856 * 29 9 7 46 46 H 1.09002 * 109.77888 * 358.59347 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2189 -0.2503 9 7 1.3630 -2.3667 0.3156 10 6 0.1446 -2.3660 1.1382 11 6 0.2249 -3.4838 2.1401 12 6 1.1207 -4.4177 2.1026 13 6 1.0643 -5.4853 3.1648 14 6 0.2876 -6.6920 2.6343 15 7 0.2333 -7.7300 3.6667 16 6 -0.4053 -8.8913 3.4218 17 8 -0.9362 -9.0777 2.3432 18 6 -0.4593 -9.9336 4.4579 19 6 -1.0711 -11.1404 4.3301 20 6 -0.8941 -11.8423 5.5452 21 6 -1.2846 -13.1011 6.0127 22 7 -0.9588 -13.4821 7.2290 23 6 -0.2622 -12.7113 8.0493 24 6 0.1611 -11.4666 7.6772 25 6 -0.1499 -11.0001 6.4004 26 7 0.1044 -9.8418 5.7171 27 1 0.5956 -9.0795 6.0614 28 6 2.2140 -4.5088 1.0802 29 6 1.8591 -3.6720 -0.1541 30 1 -0.4851 0.8400 0.0004 31 1 -0.7265 -2.5115 0.4992 32 1 0.0587 -1.4136 1.6613 33 1 -0.5051 -3.5091 2.9355 34 1 0.5641 -5.0915 4.0495 35 1 2.0772 -5.7915 3.4262 36 1 0.7878 -7.0858 1.7495 37 1 -0.7254 -6.3857 2.3730 38 1 0.6564 -7.5812 4.5268 39 1 -1.5973 -11.4990 3.4579 40 1 -1.8539 -13.7610 5.3748 41 1 -0.0225 -13.0755 9.0374 42 1 0.7281 -10.8532 8.3617 43 1 3.1444 -4.1418 1.5136 44 1 2.3440 -5.5493 0.7830 45 1 1.0847 -4.1739 -0.7344 46 1 2.7476 -3.5293 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160485921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 46.870762 kcal Electronic energy + Delta-G solvation = -27446.606278 eV Core-core repulsion = 23529.445064 eV Total energy + Delta-G solvation = -3917.161214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.90717 -40.76232 -39.50108 -38.83649 -36.86132 -35.22594 -33.44939 -33.24070 -31.89845 -31.46629 -30.62267 -29.92651 -27.33987 -25.66812 -24.56270 -23.96361 -23.79548 -22.62712 -22.51022 -21.34746 -19.88896 -19.45929 -18.64187 -17.66451 -17.15191 -16.98524 -16.79437 -16.61972 -16.39846 -15.91965 -15.77677 -15.43892 -15.41282 -15.21925 -15.05278 -14.92173 -14.64979 -14.31712 -14.15527 -13.91453 -13.68792 -13.41163 -13.22031 -12.87682 -12.82116 -12.61643 -12.49239 -12.39418 -12.14250 -11.93423 -11.68966 -11.52180 -11.16904 -11.15880 -10.70493 -10.53883 -10.34590 -9.90133 -9.50488 -9.02562 -8.76081 -7.89289 -5.31390 -0.44679 0.49078 0.91432 1.37649 1.45415 1.46483 1.57373 1.67804 1.98662 2.14568 2.49900 2.93213 3.27583 3.49130 3.55460 3.65610 3.69307 3.93127 3.94390 4.04067 4.06052 4.08257 4.24469 4.27482 4.52903 4.55074 4.56896 4.66729 4.71555 4.84907 4.88445 4.88763 4.95656 4.96747 5.01820 5.16397 5.19687 5.23071 5.27974 5.40913 5.43455 5.50035 5.60185 5.78470 5.86331 6.19824 6.27340 6.32677 6.38229 6.94343 7.10702 7.12272 7.82464 8.36948 9.19376 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.001622 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.454744 B =17256.802446 C =17534.657280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.173 4.173 12 C -0.121 4.121 13 C -0.079 4.079 14 C 0.131 3.869 15 N -0.708 5.708 16 C 0.582 3.418 17 O -0.561 6.561 18 C 0.009 3.991 19 C -0.095 4.095 20 C -0.194 4.194 21 C 0.172 3.828 22 N -0.530 5.530 23 C 0.097 3.903 24 C -0.177 4.177 25 C 0.134 3.866 26 N -0.555 5.555 27 H 0.435 0.565 28 C -0.087 4.087 29 C 0.134 3.866 30 H 0.249 0.751 31 H 0.002 0.998 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.413 0.587 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.164 0.836 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.018 0.982 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -24.464 18.534 30.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.192 4.192 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.369 3.631 17 O -0.439 6.439 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.201 4.201 21 C 0.004 3.996 22 N -0.240 5.240 23 C -0.050 4.050 24 C -0.200 4.200 25 C 0.016 3.984 26 N -0.161 5.161 27 H 0.277 0.723 28 C -0.126 4.126 29 C 0.009 3.991 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.181 0.819 40 H 0.196 0.804 41 H 0.200 0.800 42 H 0.182 0.818 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.036 0.964 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.691 -25.051 18.120 30.964 hybrid contribution 0.556 2.632 -0.285 2.705 sum 2.247 -22.419 17.836 28.736 Atomic orbital electron populations 1.70200 1.06655 1.25711 1.56299 1.25786 0.96168 1.01489 1.01684 0.85156 0.78576 0.79702 0.76728 1.18947 1.22033 1.21684 1.19581 0.92582 0.85593 1.40912 0.91085 1.44429 1.29428 1.02087 1.57961 1.19364 0.87283 0.95319 0.90039 1.22827 0.99425 0.97097 0.99834 1.20559 0.97162 0.96277 0.98185 1.20809 1.01830 0.92261 0.96718 1.21296 1.00605 0.86752 0.90579 1.45751 1.55805 1.15463 1.18962 1.17330 0.78467 0.81458 0.85819 1.90879 1.47472 1.80023 1.25519 1.20013 1.05832 0.97629 0.86537 1.21067 1.00908 0.92084 0.98219 1.19369 1.06612 0.98170 0.95954 1.22869 0.93465 0.91589 0.91675 1.67725 1.14999 1.36577 1.04741 1.22639 0.92692 0.89864 0.99833 1.21118 1.06127 0.98993 0.93719 1.18644 0.98061 0.87028 0.94704 1.41711 1.47719 1.15860 1.10858 0.72310 1.20747 0.96784 1.00068 0.94959 1.21202 0.97052 0.86065 0.94818 0.94163 0.98021 0.92717 0.86818 0.89640 0.88663 0.91555 0.92568 0.75020 0.81889 0.80395 0.79977 0.81848 0.91268 0.89502 0.96371 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 11.08 21.65 0.24 -56.17 16 2 C -0.06 -3.20 5.01 84.86 0.43 -2.77 16 3 Si 0.97 45.06 29.58 68.60 2.03 47.09 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.26 -14.24 9.71 84.03 0.82 -13.43 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 9 N -0.61 -31.33 3.01 -703.03 -2.11 -33.44 16 10 C 0.21 10.13 5.23 85.42 0.45 10.58 16 11 C -0.17 -6.36 9.47 27.10 0.26 -6.10 16 12 C -0.12 -3.67 5.11 -15.14 -0.08 -3.75 16 13 C -0.08 -1.52 5.32 29.85 0.16 -1.36 16 14 C 0.13 2.70 5.66 86.38 0.49 3.18 16 15 N -0.71 -11.06 5.55 -466.71 -2.59 -13.65 16 16 C 0.58 12.21 7.80 86.56 0.68 12.89 16 17 O -0.56 -16.81 16.84 -4.20 -0.07 -16.88 16 18 C 0.01 0.16 6.97 39.91 0.28 0.43 16 19 C -0.09 -1.66 10.53 22.52 0.24 -1.42 16 20 C -0.19 -3.15 6.21 -21.37 -0.13 -3.28 16 21 C 0.17 2.59 11.29 85.12 0.96 3.55 16 22 N -0.53 -8.64 10.33 -195.62 -2.02 -10.66 16 23 C 0.10 1.12 11.09 84.24 0.93 2.05 16 24 C -0.18 -1.73 10.09 22.19 0.22 -1.51 16 25 C 0.13 1.81 7.32 39.38 0.29 2.09 16 26 N -0.56 -6.02 6.05 -177.04 -1.07 -7.09 16 27 H 0.44 1.70 8.12 -92.70 -0.75 0.95 16 28 C -0.09 -2.73 5.95 29.71 0.18 -2.56 16 29 C 0.13 5.51 6.59 86.32 0.57 6.08 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 32 H 0.05 3.04 6.41 -2.39 -0.02 3.02 16 33 H 0.11 3.61 7.73 -2.91 -0.02 3.59 16 34 H 0.09 1.43 7.78 -2.39 -0.02 1.41 16 35 H 0.09 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 37 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.41 3.29 7.53 -92.71 -0.70 2.59 16 39 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 43 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 2.19 8.10 -2.39 -0.02 2.18 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 Total: -1.00 -76.65 383.94 0.70 -75.95 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -0.43 Total: 10.18 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.72 Total: 4.68 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -7.56 Total: -121.02 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.07 Total: -16.88 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.65 0.70 -75.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160485921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.820 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds