Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47166 * 239.99993 * 3 2 1 5 5 H 1.48501 * 109.47022 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47258 * 119.99616 * 3 2 1 7 7 C 1.37878 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.38536 * 120.00027 * 90.00594 * 10 9 7 12 12 C 1.39701 * 120.50341 * 169.28393 * 11 10 9 13 13 C 1.38106 * 118.45382 * 180.02562 * 12 11 10 14 14 N 1.32500 * 119.27338 * 359.97438 * 13 12 11 15 15 C 1.32319 * 120.95000 * 0.02562 * 14 13 12 16 16 N 1.39322 * 119.15349 * 180.27666 * 15 14 13 17 17 C 1.36129 * 119.64436 * 179.44993 * 16 15 14 18 18 C 1.35278 * 120.66296 * 179.75618 * 17 16 15 19 19 C 1.40274 * 119.94680 * 0.49222 * 18 17 16 20 20 C 1.36386 * 119.30168 * 359.76898 * 19 18 17 21 21 C 1.34669 * 119.64617 * 359.72079 * 16 15 14 22 22 O 1.22036 * 119.97898 * 359.97438 * 21 16 15 23 23 N 1.32324 * 121.69266 * 359.97438 * 15 14 13 24 24 C 1.46501 * 120.00616 * 270.00120 * 10 9 7 25 25 C 1.54266 * 110.02958 * 53.89433 * 24 10 9 26 26 C 1.54893 * 104.19614 * 217.11006 * 25 24 10 27 27 C 1.54885 * 102.75070 * 37.94204 * 26 25 24 28 28 C 1.53878 * 110.02935 * 296.73234 * 24 10 9 29 29 H 0.97004 * 120.00044 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47351 * 60.00101 * 9 7 2 31 31 H 1.08998 * 109.47193 * 300.00417 * 9 7 2 32 32 H 1.08004 * 120.76986 * 0.03879 * 12 11 10 33 33 H 1.08006 * 120.36100 * 179.97438 * 13 12 11 34 34 H 1.08000 * 119.66938 * 0.02562 * 17 16 15 35 35 H 1.07999 * 120.02627 * 180.26174 * 18 17 16 36 36 H 1.08000 * 120.34914 * 179.78882 * 19 18 17 37 37 H 1.08000 * 120.32523 * 180.02562 * 20 19 18 38 38 H 1.08997 * 110.01940 * 175.33829 * 24 10 9 39 39 H 1.08997 * 110.48544 * 335.78507 * 25 24 10 40 40 H 1.08998 * 110.48593 * 98.42927 * 25 24 10 41 41 H 1.09000 * 110.75209 * 279.62612 * 26 25 24 42 42 H 1.08995 * 110.91408 * 156.33108 * 26 25 24 43 43 H 1.08999 * 110.48888 * 203.38245 * 27 26 25 44 44 H 1.09005 * 110.48425 * 80.73529 * 27 26 25 45 45 H 1.08996 * 110.03072 * 238.56249 * 28 24 10 46 46 H 1.08992 * 110.03261 * 359.94460 * 28 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6531 -4.1392 1.2003 12 6 3.3790 -5.3326 1.2230 13 6 3.8065 -5.8195 2.4426 14 7 3.5184 -5.1456 3.5464 15 6 2.8289 -4.0174 3.4945 16 7 2.5520 -3.3361 4.6778 17 6 1.8531 -2.1687 4.6349 18 6 1.5685 -1.4928 5.7716 19 6 2.0039 -1.9894 7.0092 20 6 2.7085 -3.1564 7.0496 21 6 2.9833 -3.8368 5.8512 22 8 3.6126 -4.8821 5.8738 23 7 2.4008 -3.5165 2.3470 24 6 2.6792 -4.1694 -1.2681 25 6 3.2603 -3.0471 -2.1528 26 6 2.8355 -3.4380 -3.5901 27 6 1.4107 -4.0087 -3.3822 28 6 1.5031 -4.7808 -2.0498 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 3.6008 -5.8619 0.3081 33 1 4.3696 -6.7397 2.4960 34 1 1.5188 -1.7805 3.6842 35 1 1.0097 -0.5698 5.7260 36 1 1.7833 -1.4533 7.9204 37 1 3.0514 -3.5540 7.9934 38 1 3.4381 -4.9290 -1.0808 39 1 2.8318 -2.0836 -1.8771 40 1 4.3468 -3.0202 -2.0701 41 1 3.5013 -4.1996 -3.9960 42 1 2.8102 -2.5632 -4.2398 43 1 1.1474 -4.6836 -4.1966 44 1 0.6835 -3.2004 -3.3050 45 1 1.6917 -5.8368 -2.2426 46 1 0.5784 -4.6640 -1.4848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166536828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = 84.922111 kcal Electronic energy + Delta-G solvation = -30106.688440 eV Core-core repulsion = 26191.177257 eV Total energy + Delta-G solvation = -3915.511183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63332 -40.04207 -38.40098 -36.67444 -35.24794 -34.32523 -32.94340 -32.09160 -30.31994 -29.57039 -28.42040 -28.06743 -26.53467 -25.03164 -24.01879 -23.13144 -22.18157 -21.43308 -20.34816 -19.51150 -18.20795 -17.39214 -16.75160 -16.53723 -16.30406 -16.03318 -15.94216 -15.22022 -15.07469 -14.81682 -14.65377 -14.17979 -14.01199 -13.84392 -13.62866 -13.03131 -12.86061 -12.55942 -12.23762 -11.92905 -11.77909 -11.71165 -11.48503 -11.36015 -11.01958 -10.85732 -10.77558 -10.73149 -10.70197 -10.61884 -10.49310 -10.41004 -10.22146 -9.86570 -9.62596 -9.46636 -9.09948 -8.54733 -8.47889 -7.78257 -7.21778 -6.15234 -4.19917 0.69403 1.65780 1.92897 2.13506 2.44731 3.22061 3.27706 3.30526 3.51977 3.80459 4.31762 4.44532 4.53696 4.77507 4.88802 4.91975 4.95054 5.06954 5.15632 5.18161 5.21384 5.29661 5.42807 5.48689 5.64492 5.73648 5.79294 5.84956 5.87342 5.95081 5.97115 6.13492 6.15999 6.19830 6.23026 6.30658 6.39632 6.43863 6.57480 6.61782 6.76367 6.93244 7.04265 7.15270 7.28143 7.41812 7.72715 7.97810 8.09648 8.11392 8.30552 8.72525 8.84137 9.43251 10.90458 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.004659 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.806664 B = 6008.418282 C = 8211.208544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.254 3.746 10 N -0.565 5.565 11 C 0.471 3.529 12 C -0.320 4.320 13 C 0.185 3.815 14 N -0.540 5.540 15 C 0.541 3.459 16 N -0.428 5.428 17 C 0.159 3.841 18 C -0.238 4.238 19 C -0.012 4.012 20 C -0.251 4.251 21 C 0.513 3.487 22 O -0.492 6.492 23 N -0.567 5.567 24 C 0.149 3.851 25 C -0.149 4.149 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.185 0.815 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 -6.188 1.738 6.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.135 3.865 10 N -0.272 5.272 11 C 0.224 3.776 12 C -0.350 4.350 13 C 0.023 3.977 14 N -0.263 5.263 15 C 0.184 3.816 16 N -0.140 5.140 17 C 0.034 3.966 18 C -0.261 4.261 19 C -0.033 4.033 20 C -0.273 4.273 21 C 0.312 3.688 22 O -0.367 6.367 23 N -0.296 5.296 24 C 0.045 3.955 25 C -0.187 4.187 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.173 4.173 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.202 0.798 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.590 -6.217 2.399 7.150 hybrid contribution 0.559 0.787 -0.798 1.253 sum 3.149 -5.430 1.600 6.478 Atomic orbital electron populations 1.69910 1.05863 1.27144 1.50106 1.24876 0.94766 0.98886 0.95176 0.86687 0.79642 0.83136 0.78767 1.20303 1.21201 1.20199 1.21325 0.93198 0.90327 1.50814 0.92439 1.19292 0.86931 0.82023 0.98296 1.47366 1.44667 1.35130 1.00062 1.18170 0.86531 0.86878 0.86009 1.22169 1.11497 1.00458 1.00853 1.22699 0.91900 0.96821 0.86293 1.68376 1.18580 1.07858 1.31528 1.19078 0.90498 0.87411 0.84586 1.42829 1.45157 1.20016 1.05960 1.22494 0.88281 0.83382 1.02397 1.20724 1.10193 1.04211 0.90959 1.21518 0.90312 0.93330 0.98166 1.22047 1.08591 0.99119 0.97530 1.17282 0.81825 0.86946 0.82759 1.91024 1.38419 1.22094 1.85169 1.67275 1.30235 1.35384 0.96740 1.21731 0.95311 0.95413 0.83092 1.23063 1.00043 1.02289 0.93283 1.22410 0.96221 1.00055 0.97141 1.22304 0.97694 0.99570 0.96228 1.22534 0.99372 0.98761 0.96587 0.92621 0.94605 0.94109 0.84255 0.81940 0.79795 0.83278 0.84829 0.83336 0.90131 0.86336 0.92434 0.92385 0.91668 0.92315 0.91009 0.91901 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.15 29.54 -169.99 -5.02 15.12 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -12.82 7.24 -34.44 -0.25 -13.07 16 8 H 0.06 1.47 7.54 -52.49 -0.40 1.08 16 9 C 0.25 5.79 4.34 -5.20 -0.02 5.76 16 10 N -0.57 -10.86 2.45 -166.18 -0.41 -11.26 16 11 C 0.47 9.14 7.34 -154.83 -1.14 8.01 16 12 C -0.32 -5.17 9.31 -39.08 -0.36 -5.53 16 13 C 0.18 3.01 11.28 -17.31 -0.20 2.82 16 14 N -0.54 -10.77 7.82 -13.85 -0.11 -10.88 16 15 C 0.54 11.04 8.08 -321.91 -2.60 8.44 16 16 N -0.43 -8.02 2.82 -67.03 -0.19 -8.21 16 17 C 0.16 2.62 10.10 -16.70 -0.17 2.45 16 18 C -0.24 -3.10 10.01 -39.87 -0.40 -3.50 16 19 C -0.01 -0.14 10.10 -39.48 -0.40 -0.54 16 20 C -0.25 -3.53 9.99 -39.39 -0.39 -3.92 16 21 C 0.51 9.44 7.37 -15.45 -0.11 9.33 16 22 O -0.49 -10.52 15.25 4.89 0.07 -10.44 16 23 N -0.57 -11.89 8.03 -12.99 -0.10 -11.99 16 24 C 0.15 2.33 3.18 -66.81 -0.21 2.12 16 25 C -0.15 -2.39 6.33 -25.07 -0.16 -2.54 16 26 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 27 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 28 C -0.13 -1.88 6.01 -25.61 -0.15 -2.03 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.04 0.86 7.16 -51.93 -0.37 0.48 16 31 H 0.04 1.04 7.59 -51.93 -0.39 0.65 16 32 H 0.14 1.82 6.08 -52.48 -0.32 1.50 16 33 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.18 3.33 7.22 -52.49 -0.38 2.95 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.08 1.11 5.59 -51.93 -0.29 0.82 16 39 H 0.12 2.35 4.90 -51.93 -0.25 2.10 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.16 7.24 -51.93 -0.38 0.79 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -30.65 373.09 -12.55 -43.20 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.14 Total: 6.08 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -7.01 Total: 5.83 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.07 Total: -65.41 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.65 -12.55 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.122 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds