Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31772 * 119.45093 * 2 1 4 4 C 1.32240 * 121.56889 * 179.90787 * 3 2 1 5 5 O 1.35679 * 119.77656 * 180.12881 * 4 3 2 6 6 C 1.38793 * 120.44572 * 0.15035 * 4 3 2 7 7 C 1.50701 * 120.35348 * 179.97438 * 6 4 3 8 8 N 1.46499 * 109.47283 * 89.99938 * 7 6 4 9 9 C 1.38804 * 120.00247 * 180.02562 * 8 7 6 10 10 C 1.40081 * 120.75769 * 180.02562 * 9 8 7 11 11 N 1.31668 * 119.13739 * 180.02562 * 10 9 8 12 12 C 1.33595 * 120.78831 * 359.97438 * 11 10 9 13 13 C 1.41153 * 119.16706 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00184 * 359.97438 * 13 12 11 15 15 C 1.40045 * 119.99823 * 180.02562 * 13 12 11 16 16 N 1.30730 * 120.00049 * 359.72575 * 15 13 12 17 17 Si 1.86795 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47273 * 59.99791 * 17 15 13 19 19 H 1.48505 * 109.47234 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99987 * 17 15 13 21 21 N 1.33599 * 121.65831 * 0.27830 * 12 11 10 22 22 C 1.31651 * 120.79256 * 359.43897 * 21 12 11 23 23 C 1.38777 * 119.29203 * 0.24864 * 6 4 3 24 24 C 1.38064 * 118.55397 * 359.29323 * 23 6 4 25 25 C 1.50484 * 122.48829 * 180.68543 * 24 23 6 26 26 C 1.52800 * 110.47055 * 342.47589 * 25 24 23 27 27 C 1.53298 * 108.52888 * 51.11990 * 26 25 24 28 28 C 1.50356 * 118.66471 * 179.77607 * 23 6 4 29 29 H 1.08997 * 109.47272 * 89.99828 * 1 2 3 30 30 H 1.08993 * 109.47221 * 209.99831 * 1 2 3 31 31 H 1.09006 * 109.46871 * 330.00025 * 1 2 3 32 32 H 0.96699 * 113.99947 * 270.01869 * 5 4 3 33 33 H 1.08997 * 109.47018 * 330.00046 * 7 6 4 34 34 H 1.08998 * 109.47171 * 210.00252 * 7 6 4 35 35 H 0.97000 * 120.00052 * 0.02562 * 8 7 6 36 36 H 1.07996 * 120.43468 * 0.03932 * 10 9 8 37 37 H 0.97000 * 120.00283 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.43562 * 180.25207 * 22 21 12 39 39 H 1.09001 * 109.30333 * 102.77575 * 25 24 23 40 40 H 1.08990 * 109.30488 * 222.16999 * 25 24 23 41 41 H 1.09000 * 109.62060 * 170.83537 * 26 25 24 42 42 H 1.09000 * 109.62279 * 291.40558 * 26 25 24 43 43 H 1.08996 * 109.64479 * 49.83231 * 27 26 25 44 44 H 1.09008 * 109.63667 * 170.44605 * 27 26 25 45 45 H 1.09000 * 109.45693 * 41.89842 * 28 23 6 46 46 H 1.09007 * 108.92715 * 282.44519 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1549 1.1474 0.0000 4 6 3.4764 1.1963 0.0018 5 8 4.1062 2.3981 0.0044 6 6 4.2234 0.0266 0.0006 7 6 5.7293 0.0847 0.0021 8 7 6.2160 0.1013 1.3838 9 6 7.5794 0.1541 1.6388 10 6 8.0622 0.1702 2.9537 11 7 9.3618 0.2211 3.1589 12 6 10.2154 0.2567 2.1318 13 6 11.6018 0.3103 2.3912 14 1 11.9606 0.3226 3.4097 15 6 12.5121 0.3487 1.3276 16 7 12.0780 0.3295 0.0947 17 14 14.3470 0.4190 1.6708 18 1 14.7518 -0.7808 2.4464 19 1 15.0901 0.4522 0.3854 20 1 14.6577 1.6423 2.4533 21 7 9.7896 0.2477 0.8655 22 6 8.5040 0.1921 0.5872 23 6 3.5688 -1.1971 -0.0077 24 6 2.1882 -1.2071 0.0004 25 6 1.3892 -2.4822 0.0075 26 6 2.2596 -3.6607 -0.4262 27 6 3.5432 -3.6528 0.4118 28 6 4.3919 -2.4553 -0.0140 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 4.2897 2.7478 -0.8782 33 1 6.0585 0.9888 -0.5099 34 1 6.1272 -0.7898 -0.5128 35 1 5.5855 0.0755 2.1205 36 1 7.3774 0.1410 3.7883 37 1 12.7085 0.3557 -0.6420 38 1 8.1664 0.1811 -0.4386 39 1 1.0109 -2.6647 1.0134 40 1 0.5478 -2.3840 -0.6783 41 1 1.7206 -4.5938 -0.2618 42 1 2.5110 -3.5610 -1.4822 43 1 3.2904 -3.5654 1.4684 44 1 4.0986 -4.5749 0.2400 45 1 5.2298 -2.3445 0.6743 46 1 4.7730 -2.6235 -1.0214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169403573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = 31.259597 kcal Electronic energy + Delta-G solvation = -28917.354115 eV Core-core repulsion = 24999.515950 eV Total energy + Delta-G solvation = -3917.838165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28984 -38.93621 -38.14420 -36.56059 -35.75569 -33.83654 -33.01314 -31.67744 -31.43519 -29.92651 -29.57037 -27.93664 -25.66313 -24.36992 -24.28167 -23.34859 -22.71873 -21.24132 -20.49732 -20.04276 -18.39519 -17.77566 -17.49855 -16.64904 -15.88594 -15.50614 -15.40335 -15.13743 -14.91199 -14.34493 -14.26921 -14.02579 -13.96136 -13.81289 -13.43752 -13.27913 -13.14546 -12.73802 -12.64943 -12.55103 -12.34745 -12.15641 -11.94571 -11.81674 -11.61986 -11.18784 -11.16890 -11.16569 -11.14659 -10.73157 -10.53244 -10.20729 -9.81947 -9.55936 -9.43102 -9.30041 -9.14075 -8.88033 -8.66679 -7.23195 -6.74743 -6.37838 -4.34091 0.77470 1.03611 2.78108 2.94498 3.13686 3.17314 3.23532 3.26030 3.55524 4.01562 4.24940 4.28874 4.43778 4.48188 4.60312 4.62879 4.79065 4.80384 4.89860 5.04976 5.09352 5.20553 5.30008 5.31024 5.37538 5.47595 5.50192 5.59913 5.68365 5.71899 5.77894 5.81644 5.88772 5.89513 5.97798 6.01573 6.02968 6.09027 6.24086 6.30625 6.43198 6.49757 7.12005 7.18685 7.40209 7.43545 7.80740 8.15652 8.30357 8.52507 8.60615 8.77754 9.24997 10.27211 10.42890 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.002471 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.674611 B =11330.410059 C =12012.538113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.151 3.849 3 N -0.508 5.508 4 C 0.326 3.674 5 O -0.473 6.473 6 C -0.169 4.169 7 C 0.191 3.809 8 N -0.742 5.742 9 C -0.036 4.036 10 C 0.104 3.896 11 N -0.566 5.566 12 C 0.370 3.630 13 C -0.414 4.414 14 H 0.088 0.912 15 C 0.069 3.931 16 N -0.727 5.727 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.265 1.265 21 N -0.475 5.475 22 C 0.100 3.900 23 C 0.002 3.998 24 C -0.144 4.144 25 C -0.072 4.072 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.398 0.602 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.385 0.615 36 H 0.125 0.875 37 H 0.271 0.729 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.509 -6.095 -5.946 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.012 3.988 3 N -0.227 5.227 4 C 0.148 3.852 5 O -0.279 6.279 6 C -0.172 4.172 7 C 0.065 3.935 8 N -0.379 5.379 9 C -0.140 4.140 10 C -0.071 4.071 11 N -0.285 5.285 12 C 0.128 3.872 13 C -0.451 4.451 14 H 0.106 0.894 15 C -0.156 4.156 16 N -0.351 5.351 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 N -0.192 5.192 22 C -0.076 4.076 23 C -0.006 4.006 24 C -0.146 4.146 25 C -0.110 4.110 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.127 4.127 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.256 0.744 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.142 0.858 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.748 -5.261 -5.576 22.119 hybrid contribution 0.021 -0.380 -0.379 0.537 sum -20.727 -5.641 -5.955 22.291 Atomic orbital electron populations 1.20782 0.88778 1.03633 1.03109 1.20988 0.96549 0.86777 0.94474 1.66947 1.09851 1.30348 1.15551 1.18900 0.86393 0.85182 0.94763 1.84850 1.76353 1.33174 1.33558 1.21022 0.97655 0.92476 1.06070 1.19647 0.86460 1.00991 0.86423 1.43428 1.03044 1.87369 1.04077 1.19170 0.84455 1.13976 0.96413 1.22167 0.92812 0.99459 0.92644 1.68557 1.01921 1.21315 1.36692 1.19787 0.93866 0.91109 0.82399 1.19043 0.87784 1.43940 0.94380 0.89430 1.25991 1.01259 0.93694 0.94643 1.70135 1.35705 1.30195 0.99048 0.86286 0.81518 0.79892 0.78447 1.18978 1.20368 1.18974 1.69267 1.12144 1.15788 1.22003 1.22642 0.89702 0.98789 0.96505 1.19721 0.92711 0.94762 0.93417 1.20285 0.93432 0.96181 1.04692 1.20395 0.97385 0.91037 1.02174 1.21582 0.96298 0.97737 1.00210 1.21566 0.96075 0.97844 1.00187 1.20598 0.97995 0.90807 1.03262 0.90266 0.90379 0.90396 0.74433 0.92471 0.92415 0.78227 0.85788 0.91756 0.85845 0.90408 0.90436 0.91220 0.91546 0.91468 0.90986 0.88893 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.34 36.00 0.34 -0.45 16 2 C 0.15 1.66 6.78 -82.48 -0.56 1.10 16 3 N -0.51 -6.85 10.29 -9.49 -0.10 -6.95 16 4 C 0.33 4.46 7.72 -17.17 -0.13 4.32 16 5 O -0.47 -6.32 12.62 -18.74 -0.24 -6.56 16 6 C -0.17 -2.18 5.29 -104.22 -0.55 -2.73 16 7 C 0.19 2.75 4.08 -5.19 -0.02 2.72 16 8 N -0.74 -12.59 5.66 -59.41 -0.34 -12.93 16 9 C -0.04 -0.76 6.72 -83.32 -0.56 -1.32 16 10 C 0.10 2.40 11.20 -16.93 -0.19 2.21 16 11 N -0.57 -15.32 10.34 -12.49 -0.13 -15.45 16 12 C 0.37 10.67 7.35 -158.23 -1.16 9.50 16 13 C -0.41 -11.73 9.35 -37.80 -0.35 -12.08 16 14 H 0.09 2.39 7.85 -52.49 -0.41 1.98 16 15 C 0.07 1.80 5.50 -17.34 -0.10 1.71 16 16 N -0.73 -19.65 11.41 55.55 0.63 -19.01 16 17 Si 0.91 19.23 29.56 -169.99 -5.02 14.20 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 N -0.48 -13.27 7.84 -12.49 -0.10 -13.37 16 22 C 0.10 2.38 10.58 -16.94 -0.18 2.21 16 23 C 0.00 0.02 5.74 -104.65 -0.60 -0.58 16 24 C -0.14 -1.46 5.74 -104.66 -0.60 -2.06 16 25 C -0.07 -0.51 4.48 -28.09 -0.13 -0.64 16 26 C -0.12 -0.82 5.97 -26.68 -0.16 -0.98 16 27 C -0.12 -0.98 5.98 -26.67 -0.16 -1.14 16 28 C -0.09 -0.92 4.54 -28.14 -0.13 -1.05 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.43 6.73 -51.93 -0.35 0.08 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.40 3.43 9.06 45.56 0.41 3.85 16 33 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 34 H 0.06 0.82 6.70 -51.93 -0.35 0.47 16 35 H 0.39 6.25 8.49 -40.82 -0.35 5.91 16 36 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.27 6.64 8.29 -40.82 -0.34 6.31 16 38 H 0.12 2.60 6.88 -52.49 -0.36 2.24 16 39 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.08 0.43 7.22 -51.93 -0.37 0.06 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 43 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 44 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.09 1.12 7.27 -51.93 -0.38 0.74 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -33.62 374.34 -10.36 -43.98 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.47 Total: 9.69 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -5.24 Total: 0.75 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -0.03 Total: -67.70 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.24 Total: -6.56 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.62 -10.36 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169403573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.242 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds