Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31772 * 119.45093 * 2 1 4 4 C 1.32240 * 121.56889 * 179.90787 * 3 2 1 5 5 O 1.35679 * 119.77656 * 180.12881 * 4 3 2 6 6 C 1.38793 * 120.44572 * 0.15035 * 4 3 2 7 7 C 1.50701 * 120.35348 * 179.97438 * 6 4 3 8 8 N 1.46499 * 109.47283 * 89.99938 * 7 6 4 9 9 C 1.38804 * 120.00247 * 180.02562 * 8 7 6 10 10 C 1.40081 * 120.75769 * 180.02562 * 9 8 7 11 11 N 1.31668 * 119.13739 * 180.02562 * 10 9 8 12 12 C 1.33595 * 120.78831 * 359.97438 * 11 10 9 13 13 C 1.41153 * 119.16706 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00184 * 359.97438 * 13 12 11 15 15 C 1.40045 * 119.99823 * 180.02562 * 13 12 11 16 16 N 1.30730 * 120.00049 * 359.72575 * 15 13 12 17 17 Si 1.86795 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47273 * 59.99791 * 17 15 13 19 19 H 1.48505 * 109.47234 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99987 * 17 15 13 21 21 N 1.33599 * 121.65831 * 0.27830 * 12 11 10 22 22 C 1.31651 * 120.79256 * 359.43897 * 21 12 11 23 23 C 1.38777 * 119.29203 * 0.24864 * 6 4 3 24 24 C 1.38064 * 118.55397 * 359.29323 * 23 6 4 25 25 C 1.50484 * 122.48829 * 180.68543 * 24 23 6 26 26 C 1.52800 * 110.47055 * 342.47589 * 25 24 23 27 27 C 1.53298 * 108.52888 * 51.11990 * 26 25 24 28 28 C 1.50356 * 118.66471 * 179.77607 * 23 6 4 29 29 H 1.08997 * 109.47272 * 89.99828 * 1 2 3 30 30 H 1.08993 * 109.47221 * 209.99831 * 1 2 3 31 31 H 1.09006 * 109.46871 * 330.00025 * 1 2 3 32 32 H 0.96699 * 113.99947 * 270.01869 * 5 4 3 33 33 H 1.08997 * 109.47018 * 330.00046 * 7 6 4 34 34 H 1.08998 * 109.47171 * 210.00252 * 7 6 4 35 35 H 0.97000 * 120.00052 * 0.02562 * 8 7 6 36 36 H 1.07996 * 120.43468 * 0.03932 * 10 9 8 37 37 H 0.97000 * 120.00283 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.43562 * 180.25207 * 22 21 12 39 39 H 1.09001 * 109.30333 * 102.77575 * 25 24 23 40 40 H 1.08990 * 109.30488 * 222.16999 * 25 24 23 41 41 H 1.09000 * 109.62060 * 170.83537 * 26 25 24 42 42 H 1.09000 * 109.62279 * 291.40558 * 26 25 24 43 43 H 1.08996 * 109.64479 * 49.83231 * 27 26 25 44 44 H 1.09008 * 109.63667 * 170.44605 * 27 26 25 45 45 H 1.09000 * 109.45693 * 41.89842 * 28 23 6 46 46 H 1.09007 * 108.92715 * 282.44519 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1549 1.1474 0.0000 4 6 3.4764 1.1963 0.0018 5 8 4.1062 2.3981 0.0044 6 6 4.2234 0.0266 0.0006 7 6 5.7293 0.0847 0.0021 8 7 6.2160 0.1013 1.3838 9 6 7.5794 0.1541 1.6388 10 6 8.0622 0.1702 2.9537 11 7 9.3618 0.2211 3.1589 12 6 10.2154 0.2567 2.1318 13 6 11.6018 0.3103 2.3912 14 1 11.9606 0.3226 3.4097 15 6 12.5121 0.3487 1.3276 16 7 12.0780 0.3295 0.0947 17 14 14.3470 0.4190 1.6708 18 1 14.7518 -0.7808 2.4464 19 1 15.0901 0.4522 0.3854 20 1 14.6577 1.6423 2.4533 21 7 9.7896 0.2477 0.8655 22 6 8.5040 0.1921 0.5872 23 6 3.5688 -1.1971 -0.0077 24 6 2.1882 -1.2071 0.0004 25 6 1.3892 -2.4822 0.0075 26 6 2.2596 -3.6607 -0.4262 27 6 3.5432 -3.6528 0.4118 28 6 4.3919 -2.4553 -0.0140 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 4.2897 2.7478 -0.8782 33 1 6.0585 0.9888 -0.5099 34 1 6.1272 -0.7898 -0.5128 35 1 5.5855 0.0755 2.1205 36 1 7.3774 0.1410 3.7883 37 1 12.7085 0.3557 -0.6420 38 1 8.1664 0.1811 -0.4386 39 1 1.0109 -2.6647 1.0134 40 1 0.5478 -2.3840 -0.6783 41 1 1.7206 -4.5938 -0.2618 42 1 2.5110 -3.5610 -1.4822 43 1 3.2904 -3.5654 1.4684 44 1 4.0986 -4.5749 0.2400 45 1 5.2298 -2.3445 0.6743 46 1 4.7730 -2.6235 -1.0214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169403573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = 6.576072 kcal Electronic energy + Delta-G solvation = -28918.424473 eV Core-core repulsion = 24999.515950 eV Total energy + Delta-G solvation = -3918.908522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18038 -40.84417 -39.01667 -37.64860 -36.92211 -35.45724 -34.36926 -33.65829 -32.30978 -31.09805 -30.60710 -29.28291 -27.19416 -25.85797 -24.99831 -24.57185 -24.06867 -22.96714 -21.56890 -20.78108 -19.72886 -19.30796 -18.44439 -18.25813 -17.36496 -17.07363 -16.63036 -16.15777 -16.04824 -15.78109 -15.38736 -15.32372 -14.96149 -14.73105 -14.51002 -14.46096 -14.26249 -14.00404 -13.86603 -13.67996 -13.31672 -13.10297 -12.99359 -12.98552 -12.84841 -12.69857 -12.53901 -12.50139 -11.94843 -11.82232 -11.74174 -11.52498 -11.42750 -11.29862 -11.14738 -10.73696 -10.35298 -10.34098 -9.53796 -9.22081 -8.51703 -8.30658 -6.32890 -0.13282 0.13941 0.88310 1.01504 1.43022 1.56059 1.56525 2.27483 2.36396 2.63442 2.85717 3.00949 3.41065 3.54209 3.71200 3.75372 3.97008 3.99982 4.01499 4.02089 4.09880 4.16198 4.26820 4.32940 4.36147 4.46883 4.56976 4.64261 4.68244 4.74144 4.77505 4.81450 4.84999 4.96463 5.00813 5.08394 5.11779 5.17914 5.23684 5.31349 5.33039 5.40616 5.43942 5.55585 5.65409 6.24214 6.48556 6.57289 6.58933 6.79929 6.91115 6.97238 7.31845 8.29923 8.51575 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.002471 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.674611 B =11330.410059 C =12012.538113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.145 3.855 3 N -0.533 5.533 4 C 0.312 3.688 5 O -0.492 6.492 6 C -0.180 4.180 7 C 0.194 3.806 8 N -0.728 5.728 9 C -0.001 4.001 10 C 0.085 3.915 11 N -0.589 5.589 12 C 0.338 3.662 13 C -0.458 4.458 14 H 0.081 0.919 15 C 0.026 3.974 16 N -0.763 5.763 17 Si 0.994 3.006 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.262 1.262 21 N -0.504 5.504 22 C 0.080 3.920 23 C -0.002 4.002 24 C -0.140 4.140 25 C -0.072 4.072 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.088 4.088 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.392 0.608 36 H 0.157 0.843 37 H 0.279 0.721 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.771 -7.428 -6.491 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 N -0.252 5.252 4 C 0.134 3.866 5 O -0.301 6.301 6 C -0.184 4.184 7 C 0.069 3.931 8 N -0.364 5.364 9 C -0.108 4.108 10 C -0.089 4.089 11 N -0.308 5.308 12 C 0.095 3.905 13 C -0.495 4.495 14 H 0.099 0.901 15 C -0.195 4.195 16 N -0.388 5.388 17 Si 0.814 3.186 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.186 1.186 21 N -0.221 5.221 22 C -0.096 4.096 23 C -0.010 4.010 24 C -0.142 4.142 25 C -0.109 4.109 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.125 4.125 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.273 0.727 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.174 0.826 37 H 0.090 0.910 38 H 0.163 0.837 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.104 -6.596 -6.146 24.801 hybrid contribution 0.377 0.017 -0.237 0.446 sum -22.727 -6.579 -6.384 24.506 Atomic orbital electron populations 1.20914 0.86155 1.04605 1.04462 1.21676 0.98288 0.86391 0.93030 1.67008 1.09734 1.31823 1.16673 1.19028 0.86817 0.85235 0.95500 1.84789 1.76524 1.33503 1.35262 1.20816 0.96297 0.93169 1.08092 1.19670 0.87962 1.00944 0.84541 1.43504 1.01282 1.85712 1.05859 1.19134 0.86137 1.10094 0.95401 1.22709 0.92282 0.99461 0.94406 1.68537 1.03448 1.22026 1.36765 1.20104 0.94677 0.92607 0.83145 1.19317 0.88635 1.46699 0.94887 0.90085 1.26891 1.06084 0.92587 0.93951 1.70210 1.37710 1.30870 0.99973 0.85106 0.74834 0.79922 0.78788 1.18431 1.18783 1.18595 1.69192 1.14123 1.16871 1.21936 1.23018 0.89164 0.99282 0.98098 1.19920 0.93617 0.94437 0.93059 1.20647 0.93030 0.97482 1.03030 1.20529 0.97560 0.89267 1.03593 1.21582 0.95492 0.98623 0.99734 1.21578 0.96726 0.96981 1.00289 1.20585 0.97589 0.91394 1.02957 0.88560 0.87849 0.90992 0.72651 0.92788 0.91913 0.77392 0.82633 0.91042 0.83687 0.89092 0.88123 0.89115 0.91619 0.91776 0.90313 0.91122 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.34 71.23 0.67 -0.56 16 2 C 0.15 2.87 6.78 42.65 0.29 3.16 16 3 N -0.53 -13.83 10.29 -296.80 -3.05 -16.88 16 4 C 0.31 8.38 7.72 84.76 0.65 9.04 16 5 O -0.49 -13.16 12.62 -89.96 -1.14 -14.29 16 6 C -0.18 -4.53 5.29 -19.60 -0.10 -4.63 16 7 C 0.19 5.50 4.08 85.63 0.35 5.85 16 8 N -0.73 -24.26 5.66 -341.86 -1.94 -26.19 16 9 C 0.00 -0.06 6.72 38.93 0.26 0.20 16 10 C 0.09 3.96 11.20 85.16 0.95 4.92 16 11 N -0.59 -32.76 10.34 -193.42 -2.00 -34.77 16 12 C 0.34 20.27 7.35 134.95 0.99 21.26 16 13 C -0.46 -27.00 9.35 23.42 0.22 -26.78 16 14 H 0.08 4.65 7.85 -2.91 -0.02 4.63 16 15 C 0.03 1.39 5.50 85.30 0.47 1.86 16 16 N -0.76 -42.36 11.41 21.84 0.25 -42.11 16 17 Si 0.99 40.13 29.56 68.60 2.03 42.16 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 N -0.50 -29.08 7.84 -193.43 -1.52 -30.60 16 22 C 0.08 3.86 10.58 85.17 0.90 4.77 16 23 C 0.00 -0.05 5.74 -19.88 -0.11 -0.17 16 24 C -0.14 -2.49 5.74 -19.89 -0.11 -2.60 16 25 C -0.07 -0.74 4.48 29.71 0.13 -0.61 16 26 C -0.12 -1.18 5.97 30.63 0.18 -1.00 16 27 C -0.12 -1.67 5.98 30.64 0.18 -1.49 16 28 C -0.09 -1.69 4.54 29.68 0.13 -1.56 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.69 6.73 -2.39 -0.02 0.67 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.41 7.24 9.06 -74.06 -0.67 6.56 16 33 H 0.05 1.59 7.39 -2.39 -0.02 1.58 16 34 H 0.06 1.75 6.70 -2.39 -0.02 1.73 16 35 H 0.39 12.33 8.49 -92.71 -0.79 11.54 16 36 H 0.16 6.08 8.06 -2.91 -0.02 6.06 16 37 H 0.28 13.91 8.29 -92.71 -0.77 13.14 16 38 H 0.15 6.17 6.88 -2.91 -0.02 6.15 16 39 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 40 H 0.10 0.63 7.22 -2.39 -0.02 0.61 16 41 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 43 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 44 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.07 1.66 7.27 -2.39 -0.02 1.65 16 46 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -75.96 374.34 -1.72 -77.67 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.41 Total: 33.34 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.06 Total: 11.66 kcal Atomic # 7 Polarization: -142.29 SS G_CDS: -8.26 Total: -150.55 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.14 Total: -14.29 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -75.96 -1.72 -77.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169403573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.250 kcal (2) G-P(sol) polarization free energy of solvation -75.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds