Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99602 * 2 1 4 4 H 1.48513 * 109.46966 * 269.99939 * 3 2 1 5 5 H 1.48498 * 109.47054 * 29.99604 * 3 2 1 6 6 H 1.48497 * 109.47204 * 150.00088 * 3 2 1 7 7 C 1.37869 * 120.00307 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85335 * 359.97438 * 7 2 1 9 9 C 1.53229 * 108.53841 * 231.33077 * 8 7 2 10 10 C 1.52955 * 109.40334 * 305.36960 * 9 8 7 11 11 H 1.08999 * 109.41501 * 303.56637 * 10 9 8 12 12 N 1.46506 * 109.41328 * 183.70658 * 10 9 8 13 13 C 1.34774 * 119.99579 * 154.99918 * 12 10 9 14 14 O 1.21604 * 120.00686 * 0.02562 * 13 12 10 15 15 C 1.47430 * 119.99615 * 180.02562 * 13 12 10 16 16 C 1.41291 * 126.41331 * 359.97253 * 15 13 12 17 17 N 1.30452 * 108.01859 * 180.02562 * 16 15 13 18 18 N 1.39931 * 108.90225 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.75536 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47115 * 305.01840 * 19 18 17 21 21 C 1.38225 * 119.61833 * 124.99919 * 20 19 18 22 22 C 1.38635 * 119.15939 * 180.02562 * 21 20 19 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61626 * 305.02597 * 20 19 18 26 26 C 1.34256 * 108.49014 * 0.25541 * 18 17 16 27 27 C 1.52954 * 109.81997 * 63.59911 * 10 9 8 28 28 C 1.51275 * 120.85111 * 179.97438 * 7 2 1 29 29 H 0.96998 * 120.00542 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.62740 * 111.61348 * 8 7 2 31 31 H 1.08998 * 109.78155 * 351.13608 * 8 7 2 32 32 H 1.09003 * 109.48151 * 185.38942 * 9 8 7 33 33 H 1.08997 * 109.49779 * 65.35851 * 9 8 7 34 34 H 0.96991 * 119.99594 * 335.00099 * 12 10 9 35 35 H 1.07999 * 125.99246 * 0.02562 * 16 15 13 36 36 H 1.09003 * 109.47315 * 185.02087 * 19 18 17 37 37 H 1.09000 * 109.47226 * 65.01952 * 19 18 17 38 38 H 1.07997 * 120.42090 * 0.02562 * 21 20 19 39 39 H 1.07999 * 120.78848 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 42 42 H 1.08005 * 126.29226 * 179.73961 * 26 18 17 43 43 H 1.09001 * 109.48276 * 56.37918 * 27 10 9 44 44 H 1.09001 * 109.48867 * 176.42246 * 27 10 9 45 45 H 1.09002 * 109.62664 * 248.39016 * 28 7 2 46 46 H 1.08999 * 109.62214 * 8.75988 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 6 1.2679 -2.5151 -0.0005 9 6 1.8239 -3.3829 1.1333 10 6 3.3408 -3.5072 0.9811 11 1 3.5742 -3.9108 -0.0041 12 7 3.8615 -4.4082 2.0124 13 6 5.0189 -5.0680 1.8087 14 8 5.6312 -4.9152 0.7693 15 6 5.5426 -5.9751 2.8463 16 6 4.9465 -6.2518 4.0970 17 7 5.7102 -7.0997 4.7292 18 7 6.8153 -7.4011 3.9255 19 6 7.9052 -8.3149 4.2764 20 6 8.5099 -7.8940 5.5911 21 6 8.5922 -8.8045 6.6278 22 6 9.1498 -8.4071 7.8332 23 6 9.6054 -7.1026 7.9514 24 6 9.4839 -6.2467 6.8734 25 7 8.9540 -6.6613 5.7392 26 6 6.7108 -6.7077 2.7806 27 6 3.9916 -2.1313 1.1323 28 6 3.5172 -1.2163 -0.0011 29 1 -0.4851 0.8400 -0.0004 30 1 1.4195 -3.0188 -0.9552 31 1 0.2032 -2.3438 0.1579 32 1 1.3716 -4.3737 1.0881 33 1 1.5915 -2.9207 2.0927 34 1 3.3732 -4.5297 2.8416 35 1 4.0209 -5.8345 4.4652 36 1 8.6688 -8.2851 3.4992 37 1 7.5151 -9.3289 4.3640 38 1 8.2267 -9.8128 6.5004 39 1 9.2268 -9.0967 8.6608 40 1 10.0450 -6.7587 8.8760 41 1 9.8319 -5.2278 6.9591 42 1 7.4107 -6.7226 1.9581 43 1 3.7079 -1.6984 2.0916 44 1 5.0757 -2.2348 1.0864 45 1 3.8773 -1.5996 -0.9559 46 1 3.8982 -0.2072 0.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199575678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 66.065712 kcal Electronic energy + Delta-G solvation = -28050.129727 eV Core-core repulsion = 24133.800869 eV Total energy + Delta-G solvation = -3916.328858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49528 -40.49984 -38.96400 -36.54941 -34.64355 -33.55604 -32.86679 -31.70364 -31.28636 -30.17210 -29.57613 -27.69216 -26.70067 -24.03035 -23.27918 -22.89340 -21.67209 -21.38655 -20.83392 -19.68720 -19.37278 -17.96296 -17.39712 -16.63632 -16.24323 -16.13151 -15.61533 -15.47815 -15.23259 -14.57344 -14.42065 -14.31488 -14.15764 -13.71313 -13.60146 -13.33638 -13.12163 -12.88370 -12.78633 -12.59635 -12.25026 -12.20971 -12.01280 -11.53774 -11.10436 -10.91370 -10.76578 -10.63208 -10.37216 -10.08261 -9.96787 -9.93107 -9.70263 -9.56569 -9.50751 -9.40780 -8.91676 -8.80172 -8.65652 -8.42863 -8.14745 -6.05045 -3.95221 0.51683 0.79928 1.56222 2.17551 2.23192 3.30303 3.32384 3.40229 3.42405 3.60718 3.78955 3.82434 4.12101 4.31944 4.41660 4.43748 4.55907 4.60805 4.69113 4.77140 4.85709 5.03363 5.20460 5.21827 5.26196 5.38255 5.57934 5.66889 5.70660 5.88738 6.00327 6.16196 6.29891 6.36437 6.57315 6.60534 6.67506 6.81513 6.90326 6.98996 7.05789 7.20067 7.36249 7.45304 7.50587 7.51780 7.71380 7.77978 7.85012 8.11560 8.44289 8.76899 9.01815 9.60196 11.04444 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002042 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.005676 B =13707.445989 C =14234.973758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.485 4.485 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.157 3.843 11 H 0.078 0.922 12 N -0.720 5.720 13 C 0.589 3.411 14 O -0.555 6.555 15 C -0.285 4.285 16 C 0.082 3.918 17 N -0.295 5.295 18 N -0.356 5.356 19 C 0.186 3.814 20 C 0.110 3.890 21 C -0.152 4.152 22 C -0.075 4.075 23 C -0.168 4.168 24 C 0.104 3.896 25 N -0.466 5.466 26 C 0.132 3.868 27 C -0.112 4.112 28 C -0.020 4.020 29 H 0.263 0.737 30 H 0.006 0.994 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.392 0.608 35 H 0.188 0.812 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.050 0.950 44 H 0.037 0.963 45 H 0.019 0.981 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.723 -19.492 16.107 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.504 4.504 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.054 3.946 11 H 0.096 0.904 12 N -0.368 5.368 13 C 0.376 3.624 14 O -0.434 6.434 15 C -0.299 4.299 16 C -0.106 4.106 17 N -0.115 5.115 18 N -0.135 5.135 19 C 0.064 3.936 20 C -0.029 4.029 21 C -0.172 4.172 22 C -0.101 4.101 23 C -0.188 4.188 24 C -0.053 4.053 25 N -0.175 5.175 26 C -0.018 4.018 27 C -0.151 4.151 28 C -0.058 4.058 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.205 0.795 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.175 0.825 42 H 0.203 0.797 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.179 -19.462 15.748 30.940 hybrid contribution 0.192 0.827 0.644 1.066 sum 18.371 -18.635 16.393 30.879 Atomic orbital electron populations 1.69836 1.06101 1.26836 1.50214 1.24841 0.94716 0.98549 0.94639 0.86685 0.80027 0.83293 0.78512 1.20440 1.21750 1.18920 1.20065 0.89435 0.91436 1.49478 1.19337 0.98620 0.92808 0.91741 1.21924 0.92480 0.98575 1.02265 1.21021 0.94292 0.88902 0.90402 0.90406 1.46171 1.23458 1.45853 1.21362 1.17227 0.80785 0.79035 0.85377 1.90752 1.58756 1.66088 1.27820 1.20409 1.00288 1.10394 0.98852 1.24061 0.99112 0.95217 0.92256 1.77124 0.96735 1.19870 1.17731 1.48174 1.17968 1.34678 1.12648 1.20575 0.86412 0.92077 0.94505 1.21070 0.96173 0.90230 0.95384 1.21907 1.00631 1.01096 0.93596 1.21595 0.94969 0.96185 0.97335 1.22231 1.01148 0.94757 1.00620 1.22790 0.94447 1.00080 0.88006 1.67426 1.08445 1.15908 1.25688 1.22923 0.97414 0.91316 0.90192 1.21874 0.97357 0.95207 1.00678 1.19793 0.96518 0.95492 0.93960 0.92681 0.97565 0.92169 0.94591 0.92752 0.77510 0.79513 0.86535 0.87631 0.84473 0.84508 0.84536 0.82498 0.79685 0.93151 0.94447 0.96289 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 12.74 55.43 0.71 -25.01 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.43 27.53 -169.99 -4.68 16.75 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.22 6.11 56.52 0.35 -5.88 16 7 C -0.49 -12.91 5.51 -98.92 -0.55 -13.46 16 8 C 0.01 0.32 5.96 -27.49 -0.16 0.16 16 9 C -0.11 -2.36 5.40 -26.64 -0.14 -2.51 16 10 C 0.16 3.17 2.35 -67.97 -0.16 3.01 16 11 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 12 N -0.72 -12.09 5.07 -54.92 -0.28 -12.37 16 13 C 0.59 10.26 7.77 -12.52 -0.10 10.16 16 14 O -0.55 -11.64 16.56 5.27 0.09 -11.55 16 15 C -0.28 -4.03 6.13 -105.06 -0.64 -4.67 16 16 C 0.08 1.02 11.50 -16.98 -0.20 0.82 16 17 N -0.30 -3.76 12.32 30.86 0.38 -3.38 16 18 N -0.36 -3.88 3.59 -61.99 -0.22 -4.10 16 19 C 0.19 1.33 6.87 -5.20 -0.04 1.29 16 20 C 0.11 0.93 6.24 -82.58 -0.51 0.42 16 21 C -0.15 -0.97 9.71 -39.44 -0.38 -1.35 16 22 C -0.07 -0.42 10.18 -39.27 -0.40 -0.82 16 23 C -0.17 -1.02 10.11 -39.44 -0.40 -1.42 16 24 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 25 N -0.47 -4.86 10.22 -9.47 -0.10 -4.96 16 26 C 0.13 1.60 11.25 -16.56 -0.19 1.41 16 27 C -0.11 -2.45 5.50 -26.65 -0.15 -2.60 16 28 C -0.02 -0.48 5.59 -27.50 -0.15 -0.63 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 1.62 7.08 -51.93 -0.37 1.25 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.39 5.41 7.55 -40.82 -0.31 5.10 16 35 H 0.19 1.81 7.50 -52.49 -0.39 1.42 16 36 H 0.12 0.56 8.06 -51.93 -0.42 0.15 16 37 H 0.11 0.49 7.87 -51.93 -0.41 0.08 16 38 H 0.14 0.52 7.95 -52.49 -0.42 0.11 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 41 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.19 1.87 8.06 -52.48 -0.42 1.45 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.03 0.84 4.59 -51.93 -0.24 0.60 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -35.27 382.65 -9.16 -44.44 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.37 Total: 1.98 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -4.46 Total: -7.56 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.49 Total: -49.82 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.68 Total: 16.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.27 -9.16 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199575678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.504 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds