Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47418 * 6.77164 * 3 2 1 5 5 N 1.46499 * 109.47026 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99939 * 270.00071 * 5 4 3 7 7 C 1.50699 * 109.47366 * 270.00063 * 6 5 4 8 8 H 1.08009 * 119.99825 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00441 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99772 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00316 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47026 * 59.99972 * 11 9 7 13 13 H 1.48500 * 109.47273 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47116 * 300.00153 * 11 9 7 15 15 C 1.34780 * 120.00039 * 90.00668 * 5 4 3 16 16 S 1.71194 * 120.00171 * 179.97438 * 15 5 4 17 17 N 1.34773 * 119.99801 * 359.97438 * 15 5 4 18 18 C 1.46500 * 120.00168 * 180.02562 * 17 15 5 19 19 C 1.52998 * 109.47277 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47044 * 180.02562 * 19 18 17 21 21 N 1.46898 * 109.46953 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99642 * 293.62955 * 21 20 19 23 23 C 1.53098 * 109.25723 * 177.60943 * 22 21 20 24 24 O 1.43023 * 109.25952 * 56.85124 * 23 22 21 25 25 C 1.43014 * 113.73189 * 301.32868 * 24 23 22 26 26 C 1.47016 * 110.99994 * 169.99953 * 21 20 19 27 27 H 1.09007 * 109.46936 * 246.77364 * 3 2 1 28 28 H 1.09000 * 109.47344 * 126.77405 * 3 2 1 29 29 H 1.09007 * 109.46904 * 60.00180 * 4 3 2 30 30 H 1.08992 * 109.47087 * 300.00061 * 4 3 2 31 31 H 1.08997 * 109.47706 * 30.00133 * 6 5 4 32 32 H 1.09005 * 109.46939 * 150.00703 * 6 5 4 33 33 H 0.97001 * 119.99644 * 179.97438 * 10 9 7 34 34 H 0.97003 * 120.00288 * 0.02562 * 17 15 5 35 35 H 1.08994 * 109.46874 * 59.99714 * 18 17 15 36 36 H 1.09000 * 109.47084 * 300.00188 * 18 17 15 37 37 H 1.08994 * 109.47742 * 59.99830 * 19 18 17 38 38 H 1.09009 * 109.47009 * 299.99684 * 19 18 17 39 39 H 1.08994 * 109.47199 * 59.99242 * 20 19 18 40 40 H 1.08996 * 109.46529 * 299.99637 * 20 19 18 41 41 H 1.08999 * 109.50673 * 297.54208 * 22 21 20 42 42 H 1.09004 * 109.50788 * 57.67624 * 22 21 20 43 43 H 1.08997 * 109.51060 * 296.91507 * 23 22 21 44 44 H 1.08998 * 109.54334 * 176.80599 * 23 22 21 45 45 H 1.08999 * 109.51224 * 298.73604 * 25 24 23 46 46 H 1.09005 * 109.53853 * 178.62625 * 25 24 23 47 47 H 1.09000 * 109.50136 * 302.32362 * 26 21 20 48 48 H 1.08996 * 109.50988 * 62.41201 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4315 -0.1701 5 7 4.5837 -1.4307 -0.1707 6 6 5.3156 -1.2809 -1.4309 7 6 5.5672 -2.6404 -2.0304 8 1 5.2167 -3.5274 -1.5235 9 6 6.2450 -2.7520 -3.2258 10 7 6.6724 -1.6719 -3.8428 11 14 6.5564 -4.4371 -3.9693 12 1 5.2588 -5.1113 -4.2283 13 1 7.2994 -4.2853 -5.2460 14 1 7.3589 -5.2545 -3.0242 15 6 5.2581 -1.5679 0.9881 16 16 6.9701 -1.5676 0.9874 17 7 4.5848 -1.7054 2.1475 18 6 5.3178 -1.8539 3.4072 19 6 4.3241 -1.9917 4.5623 20 6 5.0897 -2.1462 5.8780 21 7 4.1356 -2.2791 6.9870 22 6 3.3731 -1.0367 7.1776 23 6 2.3521 -1.2381 8.3005 24 8 3.0337 -1.6431 9.4909 25 6 3.7860 -2.8502 9.3410 26 6 4.8216 -2.6651 8.2288 27 1 2.9711 0.4061 0.9444 28 1 2.9711 0.6160 -0.8231 29 1 2.7555 -1.8370 -1.1145 30 1 2.7557 -2.0468 0.6530 31 1 4.7259 -0.6815 -2.1245 32 1 6.2679 -0.7855 -1.2413 33 1 7.1495 -1.7505 -4.6836 34 1 3.6148 -1.7059 2.1479 35 1 5.9440 -0.9766 3.5687 36 1 5.9450 -2.7442 3.3597 37 1 3.6982 -2.8692 4.4006 38 1 3.6966 -1.1016 4.6099 39 1 5.7154 -1.2685 6.0395 40 1 5.7174 -3.0361 5.8306 41 1 4.0543 -0.2291 7.4457 42 1 2.8529 -0.7835 6.2538 43 1 1.6385 -2.0089 8.0097 44 1 1.8231 -0.3031 8.4843 45 1 3.1141 -3.6679 9.0803 46 1 4.2946 -3.0813 10.2770 47 1 5.3587 -3.6005 8.0721 48 1 5.5264 -1.8838 8.5132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199946716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = 8.160493 kcal Electronic energy + Delta-G solvation = -26879.316910 eV Core-core repulsion = 23095.921045 eV Total energy + Delta-G solvation = -3783.395866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00500 -39.28859 -37.16823 -36.65856 -35.53812 -32.94764 -32.35226 -31.61317 -31.26370 -28.23207 -27.04564 -25.36450 -24.54538 -24.30619 -22.89095 -21.93266 -20.84228 -20.52031 -18.07374 -17.47575 -17.21900 -16.69252 -16.58623 -16.32205 -16.00584 -15.47911 -15.24832 -15.17286 -14.88945 -14.77697 -14.59575 -14.19371 -14.02773 -13.72362 -13.36639 -12.94474 -12.77658 -12.63248 -12.57580 -12.37636 -12.05156 -11.92821 -11.81810 -11.75957 -11.42361 -11.40267 -11.16941 -11.07947 -10.91319 -10.71524 -10.69802 -10.30545 -10.15127 -10.09219 -9.70682 -8.83264 -8.47124 -8.33389 -7.04112 -6.47986 -6.08141 -4.11559 2.04759 2.47130 2.61143 2.67835 3.14423 3.31618 3.36779 3.37567 3.42322 3.48015 3.56801 4.04381 4.41663 4.43243 4.49978 4.54123 4.65663 4.71783 4.73315 4.77443 4.80398 4.87890 4.98080 5.08998 5.10587 5.19624 5.26784 5.28572 5.35619 5.37728 5.44373 5.48768 5.53392 5.59724 5.72992 5.90035 5.90436 6.32237 6.49680 6.51298 6.58693 6.71597 7.09046 7.36348 7.40867 7.46544 7.86050 7.88675 8.11184 8.86548 9.51665 11.00418 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.002432 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.708798 B =11512.195664 C =13022.996294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.213 3.787 3 C -0.047 4.047 4 C 0.101 3.899 5 N -0.544 5.544 6 C 0.238 3.762 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.890 5.890 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.561 3.439 16 S -0.644 6.644 17 N -0.706 5.706 18 C 0.132 3.868 19 C -0.130 4.130 20 C 0.060 3.940 21 N -0.537 5.537 22 C 0.013 3.987 23 C 0.063 3.937 24 O -0.387 6.387 25 C 0.063 3.937 26 C 0.017 3.983 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 1.502 22.088 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.105 4.105 3 C -0.089 4.089 4 C -0.028 4.028 5 N -0.250 5.250 6 C 0.120 3.880 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.203 3.797 16 S -0.515 6.515 17 N -0.340 5.340 18 C 0.007 3.993 19 C -0.168 4.168 20 C -0.068 4.068 21 N -0.263 5.263 22 C -0.115 4.115 23 C -0.014 4.014 24 O -0.306 6.306 25 C -0.014 4.014 26 C -0.111 4.111 27 H 0.125 0.875 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.107 0.893 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.587 1.302 21.936 23.975 hybrid contribution -0.099 -0.474 -0.657 0.816 sum -9.686 0.828 21.279 23.394 Atomic orbital electron populations 1.81238 1.12849 1.08160 1.08973 1.28942 0.94931 0.93491 0.93135 1.19793 0.81762 1.00834 1.06549 1.21580 0.82124 0.93886 1.05230 1.47778 1.04470 1.65058 1.07665 1.19985 0.93938 0.98800 0.75314 1.21081 1.37411 0.91836 1.05629 0.92616 1.24805 0.95036 0.96830 0.96757 1.69898 1.37900 1.27856 1.17187 0.86567 0.78284 0.84245 0.78383 1.20499 1.21211 1.20008 1.22197 0.95400 0.81098 0.81016 1.93237 0.89909 1.74018 1.94337 1.44987 1.08901 1.74496 1.05639 1.21431 0.93915 1.04239 0.79727 1.21811 0.98636 1.02991 0.93368 1.21983 0.93479 1.01834 0.89490 1.62195 1.26735 1.32340 1.05003 1.22861 0.97308 0.91176 1.00141 1.22676 0.93658 1.00725 0.84342 1.87991 1.65849 1.42475 1.34253 1.22672 0.93179 0.87254 0.98268 1.22792 0.96441 1.01703 0.90185 0.87530 0.85902 0.87310 0.90803 0.94342 0.90143 0.92576 0.77441 0.90051 0.89895 0.90464 0.91492 0.93909 0.89820 0.93746 0.89287 0.92229 0.88459 0.92205 0.88415 0.89349 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.86 18.54 42.15 0.78 -5.08 16 2 C 0.21 2.29 15.43 -20.76 -0.32 1.97 16 3 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 4 C 0.10 1.19 5.13 -4.04 -0.02 1.17 16 5 N -0.54 -9.22 2.46 -177.09 -0.43 -9.66 16 6 C 0.24 5.34 4.92 -5.19 -0.03 5.32 16 7 C -0.52 -13.42 9.39 -34.44 -0.32 -13.74 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 11 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.56 9.65 7.70 -86.92 -0.67 8.98 16 16 S -0.64 -14.55 27.17 -107.50 -2.92 -17.47 16 17 N -0.71 -8.50 5.42 -62.04 -0.34 -8.84 16 18 C 0.13 1.41 5.13 -4.04 -0.02 1.39 16 19 C -0.13 -0.98 5.26 -26.73 -0.14 -1.12 16 20 C 0.06 0.45 4.96 -3.82 -0.02 0.43 16 21 N -0.54 -4.11 4.73 -234.31 -1.11 -5.22 16 22 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 23 C 0.06 0.44 7.01 37.21 0.26 0.70 16 24 O -0.39 -3.42 10.83 -35.23 -0.38 -3.80 16 25 C 0.06 0.43 7.01 37.21 0.26 0.69 16 26 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 27 H 0.11 0.80 8.14 -51.92 -0.42 0.37 16 28 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.11 1.39 8.07 -51.92 -0.42 0.97 16 30 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 31 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.08 2.10 6.58 -51.93 -0.34 1.76 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.39 3.57 6.20 -40.82 -0.25 3.31 16 35 H 0.08 0.96 7.99 -51.93 -0.42 0.54 16 36 H 0.08 1.04 7.99 -51.93 -0.41 0.63 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.45 6.52 -51.92 -0.34 0.12 16 39 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 40 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.55 6.38 -51.93 -0.33 0.22 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -34.01 405.60 -11.78 -45.78 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.87 Total: -0.88 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.33 Total: 7.11 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.36 Total: -53.02 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.38 Total: -3.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -14.55 SS G_CDS: -2.92 Total: -17.47 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.01 -11.78 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199946716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.945 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds