Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47418 * 6.77164 * 3 2 1 5 5 N 1.46499 * 109.47026 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99939 * 270.00071 * 5 4 3 7 7 C 1.50699 * 109.47366 * 270.00063 * 6 5 4 8 8 H 1.08009 * 119.99825 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00441 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99772 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00316 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47026 * 59.99972 * 11 9 7 13 13 H 1.48500 * 109.47273 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47116 * 300.00153 * 11 9 7 15 15 C 1.34780 * 120.00039 * 90.00668 * 5 4 3 16 16 S 1.71194 * 120.00171 * 179.97438 * 15 5 4 17 17 N 1.34773 * 119.99801 * 359.97438 * 15 5 4 18 18 C 1.46500 * 120.00168 * 180.02562 * 17 15 5 19 19 C 1.52998 * 109.47277 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47044 * 180.02562 * 19 18 17 21 21 N 1.46898 * 109.46953 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99642 * 293.62955 * 21 20 19 23 23 C 1.53098 * 109.25723 * 177.60943 * 22 21 20 24 24 O 1.43023 * 109.25952 * 56.85124 * 23 22 21 25 25 C 1.43014 * 113.73189 * 301.32868 * 24 23 22 26 26 C 1.47016 * 110.99994 * 169.99953 * 21 20 19 27 27 H 1.09007 * 109.46936 * 246.77364 * 3 2 1 28 28 H 1.09000 * 109.47344 * 126.77405 * 3 2 1 29 29 H 1.09007 * 109.46904 * 60.00180 * 4 3 2 30 30 H 1.08992 * 109.47087 * 300.00061 * 4 3 2 31 31 H 1.08997 * 109.47706 * 30.00133 * 6 5 4 32 32 H 1.09005 * 109.46939 * 150.00703 * 6 5 4 33 33 H 0.97001 * 119.99644 * 179.97438 * 10 9 7 34 34 H 0.97003 * 120.00288 * 0.02562 * 17 15 5 35 35 H 1.08994 * 109.46874 * 59.99714 * 18 17 15 36 36 H 1.09000 * 109.47084 * 300.00188 * 18 17 15 37 37 H 1.08994 * 109.47742 * 59.99830 * 19 18 17 38 38 H 1.09009 * 109.47009 * 299.99684 * 19 18 17 39 39 H 1.08994 * 109.47199 * 59.99242 * 20 19 18 40 40 H 1.08996 * 109.46529 * 299.99637 * 20 19 18 41 41 H 1.08999 * 109.50673 * 297.54208 * 22 21 20 42 42 H 1.09004 * 109.50788 * 57.67624 * 22 21 20 43 43 H 1.08997 * 109.51060 * 296.91507 * 23 22 21 44 44 H 1.08998 * 109.54334 * 176.80599 * 23 22 21 45 45 H 1.08999 * 109.51224 * 298.73604 * 25 24 23 46 46 H 1.09005 * 109.53853 * 178.62625 * 25 24 23 47 47 H 1.09000 * 109.50136 * 302.32362 * 26 21 20 48 48 H 1.08996 * 109.50988 * 62.41201 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4315 -0.1701 5 7 4.5837 -1.4307 -0.1707 6 6 5.3156 -1.2809 -1.4309 7 6 5.5672 -2.6404 -2.0304 8 1 5.2167 -3.5274 -1.5235 9 6 6.2450 -2.7520 -3.2258 10 7 6.6724 -1.6719 -3.8428 11 14 6.5564 -4.4371 -3.9693 12 1 5.2588 -5.1113 -4.2283 13 1 7.2994 -4.2853 -5.2460 14 1 7.3589 -5.2545 -3.0242 15 6 5.2581 -1.5679 0.9881 16 16 6.9701 -1.5676 0.9874 17 7 4.5848 -1.7054 2.1475 18 6 5.3178 -1.8539 3.4072 19 6 4.3241 -1.9917 4.5623 20 6 5.0897 -2.1462 5.8780 21 7 4.1356 -2.2791 6.9870 22 6 3.3731 -1.0367 7.1776 23 6 2.3521 -1.2381 8.3005 24 8 3.0337 -1.6431 9.4909 25 6 3.7860 -2.8502 9.3410 26 6 4.8216 -2.6651 8.2288 27 1 2.9711 0.4061 0.9444 28 1 2.9711 0.6160 -0.8231 29 1 2.7555 -1.8370 -1.1145 30 1 2.7557 -2.0468 0.6530 31 1 4.7259 -0.6815 -2.1245 32 1 6.2679 -0.7855 -1.2413 33 1 7.1495 -1.7505 -4.6836 34 1 3.6148 -1.7059 2.1479 35 1 5.9440 -0.9766 3.5687 36 1 5.9450 -2.7442 3.3597 37 1 3.6982 -2.8692 4.4006 38 1 3.6966 -1.1016 4.6099 39 1 5.7154 -1.2685 6.0395 40 1 5.7174 -3.0361 5.8306 41 1 4.0543 -0.2291 7.4457 42 1 2.8529 -0.7835 6.2538 43 1 1.6385 -2.0089 8.0097 44 1 1.8231 -0.3031 8.4843 45 1 3.1141 -3.6679 9.0803 46 1 4.2946 -3.0813 10.2770 47 1 5.3587 -3.6005 8.0721 48 1 5.5264 -1.8838 8.5132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199946716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = -14.310333 kcal Electronic energy + Delta-G solvation = -26880.291318 eV Core-core repulsion = 23095.921045 eV Total energy + Delta-G solvation = -3784.370274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71497 -40.43930 -38.05431 -37.54654 -36.54852 -34.77708 -33.21746 -32.53633 -32.06167 -29.48704 -28.24343 -26.42760 -25.58991 -25.01168 -24.34771 -22.83136 -21.79959 -21.28017 -19.18009 -18.62931 -18.50774 -18.10543 -17.43318 -17.16830 -16.72343 -16.48572 -16.07922 -16.02809 -15.90633 -15.85642 -15.61223 -15.25972 -15.19198 -14.67910 -14.44380 -14.11723 -13.76776 -13.71943 -13.48700 -13.24962 -13.19929 -12.95480 -12.82832 -12.66112 -12.58916 -12.54076 -12.32076 -12.20494 -12.12838 -11.99290 -11.86736 -11.73636 -11.51614 -11.34307 -10.65834 -10.51983 -9.70539 -9.41241 -8.75757 -8.25452 -8.11821 -6.20383 0.62197 1.13761 1.42469 1.47641 1.52293 1.65226 1.75637 1.84479 2.37099 2.48771 2.77207 2.98628 3.07530 3.22557 3.74819 3.85028 3.86177 3.94276 3.96394 4.06061 4.11758 4.22086 4.30023 4.32250 4.40701 4.54668 4.59313 4.60654 4.68609 4.75034 4.76659 4.84273 4.86349 4.87897 4.93472 5.02642 5.14284 5.17388 5.29320 5.38768 5.70798 5.86850 5.94239 5.95432 6.00578 6.14288 6.19292 6.51320 6.56081 6.84577 7.45412 8.95142 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.002432 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.708798 B =11512.195664 C =13022.996294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.243 3.757 3 C -0.034 4.034 4 C 0.095 3.905 5 N -0.541 5.541 6 C 0.255 3.745 7 C -0.522 4.522 8 H 0.049 0.951 9 C 0.019 3.981 10 N -0.921 5.921 11 Si 0.951 3.049 12 H -0.264 1.264 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.588 3.412 16 S -0.756 6.756 17 N -0.672 5.672 18 C 0.134 3.866 19 C -0.113 4.113 20 C 0.062 3.938 21 N -0.542 5.542 22 C 0.013 3.987 23 C 0.060 3.940 24 O -0.409 6.409 25 C 0.062 3.938 26 C 0.016 3.984 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 1.070 23.281 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.074 4.074 3 C -0.076 4.076 4 C -0.032 4.032 5 N -0.246 5.246 6 C 0.134 3.866 7 C -0.561 4.561 8 H 0.067 0.933 9 C -0.181 4.181 10 N -0.561 5.561 11 Si 0.777 3.223 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.225 3.775 16 S -0.628 6.628 17 N -0.306 5.306 18 C 0.010 3.990 19 C -0.151 4.151 20 C -0.067 4.067 21 N -0.268 5.268 22 C -0.115 4.115 23 C -0.017 4.017 24 O -0.328 6.328 25 C -0.015 4.015 26 C -0.112 4.112 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.129 0.871 47 H 0.115 0.885 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.036 0.861 23.175 26.128 hybrid contribution 0.551 -0.340 -0.935 1.137 sum -11.485 0.521 22.240 25.036 Atomic orbital electron populations 1.81292 1.14212 1.09487 1.10642 1.28923 0.94695 0.92150 0.91654 1.19715 0.80582 0.98985 1.08269 1.21868 0.78430 0.96318 1.06534 1.47449 1.06496 1.64627 1.05991 1.19402 0.93088 0.96872 0.77235 1.21368 1.36454 0.92963 1.05342 0.93259 1.25519 0.95279 0.99661 0.97612 1.69995 1.39032 1.29475 1.17597 0.85722 0.78514 0.80692 0.77355 1.18896 1.21020 1.21025 1.21477 0.93212 0.80457 0.82398 1.93500 0.95584 1.78570 1.95179 1.44875 1.09945 1.71407 1.04391 1.21500 0.94620 1.03075 0.79845 1.21664 0.97692 1.04094 0.91633 1.21936 0.93493 1.01670 0.89569 1.62217 1.26724 1.32649 1.05166 1.22899 0.97165 0.90643 1.00749 1.22797 0.93595 1.01417 0.83843 1.87963 1.66240 1.43249 1.35329 1.22784 0.93095 0.86690 0.98933 1.22825 0.96419 1.01886 0.90036 0.84821 0.85503 0.87792 0.87624 0.93852 0.93913 0.92739 0.74798 0.90882 0.91627 0.89798 0.89726 0.94292 0.89994 0.94538 0.88036 0.92050 0.87198 0.92046 0.87057 0.88461 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.68 18.54 20.00 0.37 -11.31 16 2 C 0.24 4.41 15.43 89.44 1.38 5.79 16 3 C -0.03 -0.49 6.03 28.79 0.17 -0.32 16 4 C 0.10 1.93 5.13 86.38 0.44 2.38 16 5 N -0.54 -17.44 2.46 -714.18 -1.75 -19.19 16 6 C 0.25 11.44 4.92 85.63 0.42 11.86 16 7 C -0.52 -26.92 9.39 25.60 0.24 -26.68 16 8 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 9 C 0.02 1.02 5.46 84.65 0.46 1.48 16 10 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 11 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 15 C 0.59 19.47 7.70 179.05 1.38 20.85 16 16 S -0.76 -35.13 27.17 -56.49 -1.53 -36.66 16 17 N -0.67 -14.29 5.42 -350.18 -1.90 -16.18 16 18 C 0.13 2.62 5.13 86.38 0.44 3.07 16 19 C -0.11 -1.35 5.26 30.60 0.16 -1.19 16 20 C 0.06 0.81 4.96 86.31 0.43 1.24 16 21 N -0.54 -7.16 4.73 -895.22 -4.23 -11.39 16 22 C 0.01 0.16 5.44 86.31 0.47 0.63 16 23 C 0.06 0.72 7.01 72.01 0.50 1.23 16 24 O -0.41 -6.65 10.83 -148.98 -1.61 -8.26 16 25 C 0.06 0.75 7.01 72.01 0.50 1.25 16 26 C 0.02 0.20 5.64 86.31 0.49 0.69 16 27 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 2.34 8.07 -2.38 -0.02 2.33 16 30 H 0.11 1.51 6.36 -2.39 -0.02 1.49 16 31 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 32 H 0.04 2.30 6.58 -2.38 -0.02 2.28 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.41 5.60 6.20 -92.71 -0.58 5.03 16 35 H 0.07 1.65 7.99 -2.39 -0.02 1.63 16 36 H 0.07 1.60 7.99 -2.39 -0.02 1.58 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.78 6.52 -2.38 -0.02 0.76 16 39 H 0.04 0.55 8.12 -2.39 -0.02 0.53 16 40 H 0.08 1.11 8.04 -2.39 -0.02 1.09 16 41 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.10 0.92 6.38 -2.38 -0.02 0.90 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 46 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.10 1.01 8.09 -2.39 -0.02 0.99 16 48 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -77.13 405.60 -0.47 -77.60 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.38 Total: 9.68 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 7.50 Total: 22.28 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -7.23 Total: -110.19 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -1.61 Total: -8.26 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -35.13 SS G_CDS: -1.53 Total: -36.66 kcal Total: -77.13 -0.47 -77.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199946716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.292 kcal (2) G-P(sol) polarization free energy of solvation -77.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds