Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47390 * 180.27393 * 3 2 1 5 5 H 1.48504 * 109.47007 * 300.27181 * 3 2 1 6 6 H 1.48497 * 109.47208 * 60.27233 * 3 2 1 7 7 C 1.38820 * 120.00029 * 180.27403 * 2 1 3 8 8 H 1.08003 * 119.99471 * 179.72985 * 7 2 1 9 9 N 1.36935 * 119.99983 * 359.72604 * 7 2 1 10 10 C 1.46499 * 119.99752 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46923 * 174.90306 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.14013 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21488 * 120.00378 * 354.90086 * 13 12 11 15 15 C 1.48376 * 119.99668 * 174.90370 * 13 12 11 16 16 C 1.40217 * 119.22012 * 179.72469 * 15 13 12 17 17 C 1.36648 * 119.90650 * 179.76069 * 16 15 13 18 18 C 1.40557 * 118.10866 * 0.50052 * 17 16 15 19 19 C 1.40404 * 122.06663 * 179.77105 * 18 17 16 20 20 N 1.31245 * 119.87381 * 179.97438 * 19 18 17 21 21 C 1.32602 * 122.68638 * 359.97438 * 20 19 18 22 22 C 1.36099 * 121.98864 * 0.02562 * 21 20 19 23 23 C 1.40942 * 118.77221 * 359.97438 * 22 21 20 24 24 N 1.31980 * 119.22279 * 359.97438 * 15 13 12 25 25 C 1.54263 * 110.03508 * 293.70120 * 11 10 9 26 26 C 1.54891 * 104.19537 * 217.10527 * 25 11 10 27 27 C 1.54890 * 102.74645 * 37.93959 * 26 25 11 28 28 C 1.53874 * 110.03309 * 176.52874 * 11 10 9 29 29 H 0.96997 * 120.00238 * 359.73011 * 1 2 3 30 30 H 0.96993 * 119.99850 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47151 * 294.90554 * 10 9 7 32 32 H 1.09000 * 109.47234 * 54.90933 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 34 34 H 1.08000 * 120.04458 * 0.02562 * 16 15 13 35 35 H 1.08002 * 120.94156 * 180.23016 * 17 16 15 36 36 H 1.08003 * 120.06372 * 359.95546 * 19 18 17 37 37 H 1.07998 * 119.00523 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.61788 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.48337 * 335.77943 * 25 11 10 40 40 H 1.08999 * 110.49079 * 98.42519 * 25 11 10 41 41 H 1.08999 * 110.75494 * 279.62495 * 26 25 11 42 42 H 1.09003 * 110.75676 * 156.25529 * 26 25 11 43 43 H 1.09008 * 110.48312 * 203.38019 * 27 26 25 44 44 H 1.08996 * 110.48731 * 80.74086 * 27 26 25 45 45 H 1.08997 * 110.03607 * 238.57477 * 28 11 10 46 46 H 1.08999 * 110.02890 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2092 6 1 1.8964 2.3935 1.2158 7 6 2.0102 -1.2022 -0.0057 8 1 3.0902 -1.2021 -0.0102 9 7 1.3256 -2.3881 -0.0058 10 6 2.0581 -3.6568 -0.0113 11 6 1.0693 -4.8171 0.1181 12 7 0.0570 -4.7334 -0.9377 13 6 0.4161 -4.8799 -2.2285 14 8 1.5894 -4.9887 -2.5241 15 6 -0.6218 -4.9083 -3.2885 16 6 -0.2297 -5.0557 -4.6266 17 6 -1.1741 -5.0885 -5.6137 18 6 -2.5239 -4.9606 -5.2432 19 6 -3.5614 -4.9783 -6.1891 20 7 -4.8073 -4.8558 -5.7952 21 6 -5.1447 -4.7133 -4.5207 22 6 -4.2146 -4.6839 -3.5276 23 6 -2.8530 -4.8094 -3.8694 24 7 -1.8919 -4.7893 -2.9500 25 6 0.3927 -4.7830 1.5040 26 6 0.2527 -6.2751 1.8952 27 6 1.5681 -6.8936 1.3602 28 6 1.8166 -6.1591 0.0266 29 1 -0.4850 0.8400 0.0040 30 1 0.3556 -2.3881 -0.0014 31 1 2.6111 -3.7530 -0.9456 32 1 2.7546 -3.6778 0.8270 33 1 -0.8714 -4.5727 -0.7078 34 1 0.8171 -5.1473 -4.8764 35 1 -0.8910 -5.2050 -6.6494 36 1 -3.3346 -5.0922 -7.2389 37 1 -6.1891 -4.6179 -4.2630 38 1 -4.5142 -4.5672 -2.4966 39 1 1.0217 -4.2577 2.2227 40 1 -0.5881 -4.3122 1.4383 41 1 -0.6120 -6.7233 1.4057 42 1 0.1858 -6.3861 2.9775 43 1 1.4450 -7.9632 1.1895 44 1 2.3869 -6.7092 2.0557 45 1 1.4256 -6.7485 -0.8027 46 1 2.8837 -5.9837 -0.1095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269578805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = 42.193505 kcal Electronic energy + Delta-G solvation = -29534.555382 eV Core-core repulsion = 25617.191347 eV Total energy + Delta-G solvation = -3917.364035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43970 -40.09590 -38.37591 -37.19608 -34.30525 -34.00727 -33.12039 -31.84294 -30.88490 -30.61976 -28.63465 -28.09385 -25.78385 -24.52848 -24.27875 -22.89179 -22.18928 -21.40949 -20.59286 -18.98460 -18.75937 -18.05762 -17.39917 -17.04750 -16.18926 -15.90977 -15.30227 -15.11137 -14.96929 -14.63973 -14.43566 -14.36178 -14.24875 -13.94455 -13.45958 -13.18931 -13.15234 -13.07275 -12.73640 -12.63927 -12.44000 -11.88948 -11.57311 -11.17014 -10.95142 -10.93731 -10.87848 -10.82239 -10.68312 -10.47293 -10.40424 -10.21079 -9.98907 -9.92324 -9.66312 -9.47231 -9.45532 -8.79612 -8.74413 -8.57872 -6.82508 -5.71276 -2.97893 -0.13424 0.37009 1.61900 2.41082 3.21666 3.35664 3.45897 3.51903 3.53945 3.85131 3.95394 4.08662 4.25679 4.44352 4.50454 4.60676 4.65390 4.77360 4.85471 4.99512 5.06829 5.11387 5.35610 5.44412 5.51926 5.54907 5.59734 5.66246 5.68039 5.68881 5.81083 5.83882 5.90760 5.98919 6.04892 6.11753 6.22628 6.29331 6.36324 6.39395 6.51140 6.54290 6.60322 6.89674 7.10225 7.40569 7.63363 7.76175 7.87519 8.46721 8.47873 9.59362 10.18051 10.53698 11.51843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.003906 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.419411 B = 7166.867789 C = 8984.406646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.145 3.855 11 C 0.166 3.834 12 N -0.684 5.684 13 C 0.570 3.430 14 O -0.520 6.520 15 C 0.151 3.849 16 C -0.129 4.129 17 C -0.041 4.041 18 C -0.156 4.156 19 C 0.158 3.842 20 N -0.486 5.486 21 C 0.084 3.916 22 C -0.131 4.131 23 C 0.154 3.846 24 N -0.444 5.444 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.252 0.748 30 H 0.382 0.618 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.408 0.592 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 -16.691 -7.072 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.017 3.983 11 C 0.081 3.919 12 N -0.335 5.335 13 C 0.354 3.646 14 O -0.395 6.395 15 C -0.005 4.005 16 C -0.149 4.149 17 C -0.069 4.069 18 C -0.161 4.161 19 C -0.016 4.016 20 N -0.194 5.194 21 C -0.059 4.059 22 C -0.151 4.151 23 C 0.025 3.975 24 N -0.156 5.156 25 C -0.155 4.155 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.216 0.784 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.244 0.756 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.835 -16.550 -6.859 19.175 hybrid contribution 0.538 1.211 -0.165 1.335 sum -6.297 -15.339 -7.024 18.008 Atomic orbital electron populations 1.69662 1.05033 1.25273 1.58432 1.24686 0.95484 0.97491 1.03446 0.86149 0.78856 0.84357 0.77083 1.20591 1.22051 1.21967 1.19283 0.91038 0.84200 1.41732 0.91272 1.42231 1.05705 0.99733 1.89428 1.21167 0.92980 0.85001 0.99158 1.21365 0.88648 0.95717 0.86203 1.45904 1.12170 1.70487 1.04916 1.17711 0.87001 0.77513 0.82414 1.90765 1.17120 1.49596 1.82012 1.21780 0.90811 0.94069 0.93832 1.21863 1.02414 0.98703 0.91938 1.21428 0.90735 0.94204 1.00550 1.19940 0.96260 1.04242 0.95623 1.23215 0.86810 0.92245 0.99321 1.67476 1.20883 1.11715 1.19305 1.22248 1.00354 0.95986 0.87360 1.21824 0.90582 1.00491 1.02243 1.18895 0.93833 0.96168 0.88555 1.67905 0.99935 1.11134 1.36616 1.22585 1.01511 0.96169 0.95228 1.22540 0.97581 0.95800 1.00381 1.22383 0.97785 0.99015 0.96983 1.22417 1.01157 0.94723 0.97295 0.93774 0.78423 0.94439 0.95415 0.75619 0.82651 0.83050 0.81534 0.82226 0.83271 0.89454 0.90863 0.91791 0.91584 0.92051 0.91492 0.91570 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.23 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.66 5.27 -59.91 -0.32 -18.97 16 10 C 0.15 3.09 4.64 -4.04 -0.02 3.07 16 11 C 0.17 2.78 0.57 -130.70 -0.07 2.71 16 12 N -0.68 -11.50 4.48 -47.33 -0.21 -11.72 16 13 C 0.57 10.05 6.86 -12.09 -0.08 9.96 16 14 O -0.52 -10.16 13.55 5.38 0.07 -10.09 16 15 C 0.15 2.34 6.75 -82.89 -0.56 1.78 16 16 C -0.13 -1.64 9.54 -39.41 -0.38 -2.02 16 17 C -0.04 -0.41 9.92 -39.28 -0.39 -0.80 16 18 C -0.16 -1.79 5.75 -106.74 -0.61 -2.41 16 19 C 0.16 1.53 11.05 -16.99 -0.19 1.35 16 20 N -0.49 -5.36 10.30 -13.18 -0.14 -5.50 16 21 C 0.08 0.86 11.06 -17.99 -0.20 0.66 16 22 C -0.13 -1.49 10.08 -39.33 -0.40 -1.89 16 23 C 0.15 2.07 6.63 -84.86 -0.56 1.51 16 24 N -0.44 -6.72 9.51 -7.49 -0.07 -6.79 16 25 C -0.12 -1.75 5.74 -25.07 -0.14 -1.90 16 26 C -0.13 -1.49 6.91 -24.74 -0.17 -1.66 16 27 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 28 C -0.12 -1.70 5.22 -25.62 -0.13 -1.84 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.19 7.19 -40.82 -0.29 9.89 16 31 H 0.04 0.88 6.56 -51.93 -0.34 0.54 16 32 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 33 H 0.41 6.55 7.55 -40.82 -0.31 6.25 16 34 H 0.16 1.84 7.60 -52.49 -0.40 1.45 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 39 H 0.09 1.41 7.78 -51.93 -0.40 1.00 16 40 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.99 6.99 -51.93 -0.36 0.63 16 46 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -34.52 378.09 -9.84 -44.36 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.25 Total: 13.37 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -4.33 Total: -0.45 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -0.01 Total: -70.86 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.52 -9.84 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269578805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.555 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds