Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47390 * 180.27393 * 3 2 1 5 5 H 1.48504 * 109.47007 * 300.27181 * 3 2 1 6 6 H 1.48497 * 109.47208 * 60.27233 * 3 2 1 7 7 C 1.38820 * 120.00029 * 180.27403 * 2 1 3 8 8 H 1.08003 * 119.99471 * 179.72985 * 7 2 1 9 9 N 1.36935 * 119.99983 * 359.72604 * 7 2 1 10 10 C 1.46499 * 119.99752 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46923 * 174.90306 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.14013 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21488 * 120.00378 * 354.90086 * 13 12 11 15 15 C 1.48376 * 119.99668 * 174.90370 * 13 12 11 16 16 C 1.40217 * 119.22012 * 179.72469 * 15 13 12 17 17 C 1.36648 * 119.90650 * 179.76069 * 16 15 13 18 18 C 1.40557 * 118.10866 * 0.50052 * 17 16 15 19 19 C 1.40404 * 122.06663 * 179.77105 * 18 17 16 20 20 N 1.31245 * 119.87381 * 179.97438 * 19 18 17 21 21 C 1.32602 * 122.68638 * 359.97438 * 20 19 18 22 22 C 1.36099 * 121.98864 * 0.02562 * 21 20 19 23 23 C 1.40942 * 118.77221 * 359.97438 * 22 21 20 24 24 N 1.31980 * 119.22279 * 359.97438 * 15 13 12 25 25 C 1.54263 * 110.03508 * 293.70120 * 11 10 9 26 26 C 1.54891 * 104.19537 * 217.10527 * 25 11 10 27 27 C 1.54890 * 102.74645 * 37.93959 * 26 25 11 28 28 C 1.53874 * 110.03309 * 176.52874 * 11 10 9 29 29 H 0.96997 * 120.00238 * 359.73011 * 1 2 3 30 30 H 0.96993 * 119.99850 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47151 * 294.90554 * 10 9 7 32 32 H 1.09000 * 109.47234 * 54.90933 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 34 34 H 1.08000 * 120.04458 * 0.02562 * 16 15 13 35 35 H 1.08002 * 120.94156 * 180.23016 * 17 16 15 36 36 H 1.08003 * 120.06372 * 359.95546 * 19 18 17 37 37 H 1.07998 * 119.00523 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.61788 * 180.02562 * 22 21 20 39 39 H 1.08996 * 110.48337 * 335.77943 * 25 11 10 40 40 H 1.08999 * 110.49079 * 98.42519 * 25 11 10 41 41 H 1.08999 * 110.75494 * 279.62495 * 26 25 11 42 42 H 1.09003 * 110.75676 * 156.25529 * 26 25 11 43 43 H 1.09008 * 110.48312 * 203.38019 * 27 26 25 44 44 H 1.08996 * 110.48731 * 80.74086 * 27 26 25 45 45 H 1.08997 * 110.03607 * 238.57477 * 28 11 10 46 46 H 1.08999 * 110.02890 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2092 6 1 1.8964 2.3935 1.2158 7 6 2.0102 -1.2022 -0.0057 8 1 3.0902 -1.2021 -0.0102 9 7 1.3256 -2.3881 -0.0058 10 6 2.0581 -3.6568 -0.0113 11 6 1.0693 -4.8171 0.1181 12 7 0.0570 -4.7334 -0.9377 13 6 0.4161 -4.8799 -2.2285 14 8 1.5894 -4.9887 -2.5241 15 6 -0.6218 -4.9083 -3.2885 16 6 -0.2297 -5.0557 -4.6266 17 6 -1.1741 -5.0885 -5.6137 18 6 -2.5239 -4.9606 -5.2432 19 6 -3.5614 -4.9783 -6.1891 20 7 -4.8073 -4.8558 -5.7952 21 6 -5.1447 -4.7133 -4.5207 22 6 -4.2146 -4.6839 -3.5276 23 6 -2.8530 -4.8094 -3.8694 24 7 -1.8919 -4.7893 -2.9500 25 6 0.3927 -4.7830 1.5040 26 6 0.2527 -6.2751 1.8952 27 6 1.5681 -6.8936 1.3602 28 6 1.8166 -6.1591 0.0266 29 1 -0.4850 0.8400 0.0040 30 1 0.3556 -2.3881 -0.0014 31 1 2.6111 -3.7530 -0.9456 32 1 2.7546 -3.6778 0.8270 33 1 -0.8714 -4.5727 -0.7078 34 1 0.8171 -5.1473 -4.8764 35 1 -0.8910 -5.2050 -6.6494 36 1 -3.3346 -5.0922 -7.2389 37 1 -6.1891 -4.6179 -4.2630 38 1 -4.5142 -4.5672 -2.4966 39 1 1.0217 -4.2577 2.2227 40 1 -0.5881 -4.3122 1.4383 41 1 -0.6120 -6.7233 1.4057 42 1 0.1858 -6.3861 2.9775 43 1 1.4450 -7.9632 1.1895 44 1 2.3869 -6.7092 2.0557 45 1 1.4256 -6.7485 -0.8027 46 1 2.8837 -5.9837 -0.1095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269578805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = 18.515978 kcal Electronic energy + Delta-G solvation = -29535.582117 eV Core-core repulsion = 25617.191347 eV Total energy + Delta-G solvation = -3918.390769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39364 -41.36262 -39.42343 -38.39365 -36.19409 -35.02990 -34.39566 -33.17595 -32.54211 -31.49139 -29.86561 -29.57847 -26.95029 -26.19196 -25.25845 -24.04054 -23.74925 -22.58048 -21.68320 -20.38526 -19.70918 -19.20821 -19.12839 -18.28956 -17.35508 -17.12640 -16.60040 -16.40847 -16.04745 -15.99061 -15.63031 -15.50461 -15.35887 -15.31999 -15.03108 -14.59555 -14.40426 -14.12156 -14.04375 -13.77368 -13.52247 -13.31089 -13.22583 -12.86479 -12.70527 -12.30072 -12.17326 -12.00743 -11.93320 -11.81048 -11.80656 -11.75200 -11.43164 -11.36602 -11.01094 -10.84162 -10.50886 -10.46421 -9.99705 -9.58938 -8.98351 -7.97204 -5.24395 -1.06102 -0.54125 0.73897 1.35488 1.42646 1.43512 1.53796 1.98583 2.25188 2.52960 2.81204 2.99417 3.34903 3.36530 3.43759 3.47545 3.60268 3.60287 3.68880 3.78180 3.91079 4.05363 4.15827 4.26331 4.38129 4.49122 4.52124 4.53596 4.65473 4.66573 4.75369 4.79317 4.83192 4.85255 4.90277 4.94299 5.07712 5.08118 5.17643 5.23395 5.28279 5.32381 5.44989 5.48017 5.53437 5.64811 6.24297 6.31673 6.59735 6.83404 7.12263 7.31769 8.06831 8.33655 9.26131 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.003906 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.419411 B = 7166.867789 C = 8984.406646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.168 3.832 12 N -0.683 5.683 13 C 0.563 3.437 14 O -0.549 6.549 15 C 0.124 3.876 16 C -0.150 4.150 17 C -0.012 4.012 18 C -0.168 4.168 19 C 0.171 3.829 20 N -0.502 5.502 21 C 0.093 3.907 22 C -0.151 4.151 23 C 0.128 3.872 24 N -0.466 5.466 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.111 4.111 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.014 0.986 32 H 0.030 0.970 33 H 0.409 0.591 34 H 0.158 0.842 35 H 0.202 0.798 36 H 0.210 0.790 37 H 0.188 0.812 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -17.716 -8.298 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.215 1.215 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.020 3.980 11 C 0.082 3.918 12 N -0.333 5.333 13 C 0.348 3.652 14 O -0.426 6.426 15 C -0.030 4.030 16 C -0.171 4.171 17 C -0.040 4.040 18 C -0.172 4.172 19 C -0.002 4.002 20 N -0.210 5.210 21 C -0.050 4.050 22 C -0.172 4.172 23 C -0.001 4.001 24 N -0.178 5.178 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.150 4.150 29 H 0.059 0.941 30 H 0.207 0.793 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.246 0.754 34 H 0.176 0.824 35 H 0.219 0.781 36 H 0.227 0.773 37 H 0.205 0.795 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.579 -17.603 -8.066 20.793 hybrid contribution 0.709 1.519 0.113 1.680 sum -6.870 -16.084 -7.953 19.213 Atomic orbital electron populations 1.69813 1.06422 1.25808 1.59658 1.25474 0.96380 1.00732 1.03774 0.85119 0.78182 0.80015 0.76751 1.19362 1.22255 1.21545 1.19629 0.91276 0.85567 1.41021 0.91377 1.42330 1.05443 1.00548 1.89171 1.21222 0.93870 0.85173 0.97734 1.21353 0.88192 0.94941 0.87324 1.45928 1.12163 1.70200 1.05001 1.18172 0.87332 0.76710 0.82991 1.90725 1.18366 1.51019 1.82527 1.21619 0.90659 0.96358 0.94316 1.21968 1.03313 1.00347 0.91429 1.21937 0.89362 0.90598 1.02101 1.20242 0.97535 1.04306 0.95121 1.23892 0.85755 0.89781 1.00765 1.67603 1.21510 1.12437 1.19477 1.22689 1.01400 0.93986 0.86917 1.21977 0.90158 1.01917 1.03103 1.19341 0.94233 0.96788 0.89693 1.67795 1.00085 1.12102 1.37863 1.22542 1.00408 0.98698 0.93707 1.22497 0.97948 0.92843 1.01781 1.22375 0.97995 0.99840 0.95118 1.22348 1.00028 0.93568 0.99074 0.94111 0.79286 0.96861 0.95209 0.75430 0.82400 0.78110 0.77314 0.79511 0.82809 0.90770 0.91712 0.90943 0.89458 0.89824 0.90583 0.92086 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 2 C -0.07 -4.24 5.50 84.87 0.47 -3.77 16 3 Si 0.97 47.89 29.55 68.60 2.03 49.92 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -14.30 9.99 84.04 0.84 -13.47 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.73 -39.11 5.27 -343.44 -1.81 -40.92 16 10 C 0.15 6.57 4.64 86.38 0.40 6.97 16 11 C 0.17 5.82 0.57 4.33 0.00 5.82 16 12 N -0.68 -24.24 4.48 -421.97 -1.89 -26.13 16 13 C 0.56 21.01 6.86 86.94 0.60 21.61 16 14 O -0.55 -22.74 13.55 -3.68 -0.05 -22.79 16 15 C 0.12 4.04 6.75 42.30 0.29 4.33 16 16 C -0.15 -3.83 9.54 22.38 0.21 -3.62 16 17 C -0.01 -0.22 9.92 22.46 0.22 0.00 16 18 C -0.17 -3.53 5.75 -21.23 -0.12 -3.65 16 19 C 0.17 2.77 11.05 85.31 0.94 3.71 16 20 N -0.50 -9.75 10.30 -195.61 -2.02 -11.77 16 21 C 0.09 1.73 11.06 84.08 0.93 2.66 16 22 C -0.15 -3.40 10.08 22.43 0.23 -3.18 16 23 C 0.13 3.44 6.63 40.58 0.27 3.71 16 24 N -0.47 -14.69 9.51 -177.61 -1.69 -16.38 16 25 C -0.12 -3.51 5.74 31.67 0.18 -3.33 16 26 C -0.11 -2.50 6.91 31.89 0.22 -2.28 16 27 C -0.12 -2.54 6.83 31.67 0.22 -2.32 16 28 C -0.11 -3.27 5.22 31.32 0.16 -3.11 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.37 20.90 7.19 -92.71 -0.67 20.23 16 31 H 0.01 0.67 6.56 -2.39 -0.02 0.65 16 32 H 0.03 1.31 8.04 -2.39 -0.02 1.29 16 33 H 0.41 14.03 7.55 -92.71 -0.70 13.33 16 34 H 0.16 3.83 7.60 -2.91 -0.02 3.81 16 35 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.07 2.44 7.78 -2.39 -0.02 2.42 16 40 H 0.06 2.06 7.70 -2.39 -0.02 2.04 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 1.86 6.99 -2.39 -0.02 1.84 16 46 H 0.06 2.00 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -77.62 378.09 0.57 -77.05 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.34 Total: 41.10 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.05 Total: 10.10 kcal Atomic # 7 Polarization: -148.25 SS G_CDS: -7.12 Total: -155.38 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -77.62 0.57 -77.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269578805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.564 kcal (2) G-P(sol) polarization free energy of solvation -77.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds