Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40357 * 120.48114 * 252.34324 * 3 2 1 5 5 C 1.36888 * 118.48594 * 180.26385 * 4 3 2 6 6 C 1.39361 * 119.38737 * 359.51693 * 5 4 3 7 7 N 1.38583 * 119.53354 * 180.25240 * 6 5 4 8 8 C 1.48057 * 111.00194 * 176.80223 * 7 6 5 9 9 C 1.54258 * 106.83475 * 146.61045 * 8 7 6 10 10 C 1.54366 * 104.82764 * 358.55021 * 9 8 7 11 11 H 1.08999 * 110.89276 * 95.05427 * 10 9 8 12 12 C 1.48926 * 111.00314 * 293.82596 * 7 6 5 13 13 H 1.09004 * 112.07413 * 78.18074 * 12 7 6 14 14 C 1.53110 * 107.98148 * 314.48717 * 12 7 6 15 15 C 1.52926 * 109.18938 * 184.12817 * 14 12 7 16 16 C 1.50310 * 109.41718 * 52.12462 * 15 14 12 17 17 O 1.21277 * 118.67408 * 159.20738 * 16 15 14 18 18 N 1.33326 * 122.64590 * 339.19194 * 16 15 14 19 19 C 1.46498 * 117.36488 * 180.23937 * 18 16 15 20 20 C 1.52998 * 109.47282 * 89.99829 * 19 18 16 21 21 C 1.50703 * 109.47103 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99686 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99986 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99715 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47048 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47310 * 120.00331 * 25 23 21 28 28 H 1.48506 * 109.46724 * 240.00189 * 25 23 21 29 29 N 1.32565 * 120.93419 * 0.22092 * 6 5 4 30 30 C 1.31711 * 121.64128 * 0.03321 * 29 6 5 31 31 H 1.07992 * 120.75645 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.30546 * 179.78446 * 5 4 3 33 33 H 1.09002 * 109.98943 * 265.95753 * 8 7 6 34 34 H 1.08999 * 109.98207 * 27.26451 * 8 7 6 35 35 H 1.08999 * 110.36583 * 239.71643 * 9 8 7 36 36 H 1.08998 * 110.46027 * 117.43638 * 9 8 7 37 37 H 1.08994 * 109.51889 * 304.03927 * 14 12 7 38 38 H 1.08999 * 109.52034 * 64.21678 * 14 12 7 39 39 H 1.08992 * 109.48031 * 172.10761 * 15 14 12 40 40 H 1.08999 * 109.47724 * 292.14365 * 15 14 12 41 41 H 1.08998 * 109.47286 * 210.00233 * 19 18 16 42 42 H 1.09003 * 109.46813 * 330.00079 * 19 18 16 43 43 H 1.09006 * 109.46771 * 300.00087 * 20 19 18 44 44 H 1.08995 * 109.47556 * 60.00096 * 20 19 18 45 45 H 0.97003 * 119.99641 * 180.02562 * 24 23 21 46 46 H 1.08006 * 119.74192 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2798 0.3678 1.1526 5 6 4.6479 0.3593 1.1055 6 6 5.2892 -0.0203 -0.0721 7 7 6.6741 -0.0351 -0.1215 8 6 7.1531 -0.5378 -1.4291 9 6 8.4618 0.2152 -1.7451 10 6 8.6559 1.1845 -0.5595 11 1 9.3089 0.7483 0.1964 12 6 7.2274 1.3419 0.0029 13 1 7.2216 1.6941 1.0345 14 6 6.4205 2.2606 -0.9186 15 6 7.0311 3.6624 -0.8909 16 6 8.5037 3.5718 -1.1778 17 8 9.0818 4.5624 -1.5722 18 7 9.2001 2.4465 -1.0160 19 6 10.6314 2.4900 -1.3252 20 6 11.4133 2.8769 -0.0683 21 6 12.8856 2.9222 -0.3867 22 1 13.2292 2.6979 -1.3857 23 6 13.7939 3.2510 0.5972 24 7 13.3753 3.5246 1.8136 25 14 15.6188 3.3079 0.2024 26 1 15.8271 2.9614 -1.2265 27 1 16.1391 4.6743 0.4620 28 1 16.3409 2.3324 1.0582 29 7 4.5933 -0.3680 -1.1455 30 6 3.2762 -0.3688 -1.1446 31 1 2.7601 0.6544 2.0548 32 1 5.2248 0.6399 1.9743 33 1 7.3449 -1.6092 -1.3689 34 1 6.4107 -0.3347 -2.2009 35 1 8.3639 0.7711 -2.6775 36 1 9.2974 -0.4820 -1.8058 37 1 6.4486 1.8713 -1.9363 38 1 5.3876 2.3064 -0.5737 39 1 6.5509 4.2830 -1.6473 40 1 6.8791 4.1056 0.0933 41 1 10.9588 1.5089 -1.6692 42 1 10.8120 3.2279 -2.1069 43 1 11.0859 3.8581 0.2755 44 1 11.2328 2.1391 0.7134 45 1 14.0143 3.7563 2.5057 46 1 2.7400 -0.6573 -2.0367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274677982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = 55.207372 kcal Electronic energy + Delta-G solvation = -29415.258475 eV Core-core repulsion = 25498.458764 eV Total energy + Delta-G solvation = -3916.799711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90403 -40.34141 -38.54410 -36.92796 -35.42130 -33.98145 -33.15526 -32.93220 -32.24884 -29.92942 -29.08149 -28.34736 -25.20077 -24.54719 -24.39080 -23.72458 -21.92434 -21.37885 -20.58333 -19.51623 -18.25587 -17.67446 -16.99859 -16.80895 -16.55208 -15.94839 -15.57789 -15.10544 -14.95513 -14.75894 -14.55458 -14.32464 -14.17798 -13.89024 -13.83560 -13.49150 -13.36466 -12.99529 -12.86691 -12.64079 -12.59607 -12.32656 -12.22407 -12.08082 -12.00338 -11.57219 -11.26051 -11.15684 -10.95422 -10.86949 -10.64659 -10.49864 -10.29384 -9.93262 -9.89684 -9.86177 -9.38916 -9.07219 -8.61358 -8.36924 -8.13476 -6.02332 -4.04861 0.09283 0.73547 2.22078 2.43994 2.95525 3.01057 3.30671 3.37455 3.38067 3.40349 3.43113 3.54770 3.84586 4.10764 4.21898 4.36669 4.45038 4.45821 4.57164 4.61649 4.69694 4.91716 4.97591 5.03423 5.11519 5.18895 5.24640 5.34298 5.36586 5.47282 5.54158 5.60720 5.64830 5.67193 5.80427 5.89328 5.90191 5.97844 6.13787 6.16295 6.52265 6.62950 6.79486 6.86415 7.02802 7.36726 7.59930 7.71267 7.97587 7.98095 8.35063 8.58944 9.01784 9.59051 11.09187 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.002401 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.073896 B =11657.686326 C =11820.770885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.262 3.738 3 C -0.117 4.117 4 C -0.007 4.007 5 C -0.178 4.178 6 C 0.345 3.655 7 N -0.457 5.457 8 C 0.037 3.963 9 C -0.146 4.146 10 C 0.150 3.850 11 H 0.106 0.894 12 C 0.070 3.930 13 H 0.119 0.881 14 C -0.146 4.146 15 C -0.131 4.131 16 C 0.510 3.490 17 O -0.543 6.543 18 N -0.590 5.590 19 C 0.109 3.891 20 C 0.015 3.985 21 C -0.519 4.519 22 H 0.057 0.943 23 C 0.058 3.942 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 N -0.516 5.516 30 C 0.183 3.817 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.445 -9.635 -3.202 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.054 4.054 3 C -0.124 4.124 4 C -0.034 4.034 5 C -0.200 4.200 6 C 0.113 3.887 7 N -0.174 5.174 8 C -0.090 4.090 9 C -0.185 4.185 10 C 0.044 3.956 11 H 0.124 0.876 12 C -0.036 4.036 13 H 0.137 0.863 14 C -0.184 4.184 15 C -0.171 4.171 16 C 0.298 3.702 17 O -0.420 6.420 18 N -0.321 5.321 19 C -0.012 4.012 20 C -0.023 4.023 21 C -0.557 4.557 22 H 0.075 0.925 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 N -0.230 5.230 30 C 0.021 3.979 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.145 -9.651 -3.562 23.514 hybrid contribution 0.720 0.502 0.279 0.921 sum -20.425 -9.149 -3.282 22.620 Atomic orbital electron populations 1.81297 1.11929 1.09054 1.07105 1.25388 0.92250 0.93655 0.94098 1.16906 0.85544 1.12106 0.97871 1.21236 0.93616 0.91745 0.96837 1.21339 0.94436 1.05100 0.99120 1.20132 0.90424 0.89116 0.89060 1.61957 1.03001 1.19476 1.32931 1.23009 0.96364 1.00417 0.89205 1.22975 0.97746 0.98732 0.99075 1.21378 0.93241 0.84823 0.96136 0.87638 1.23264 0.94019 0.84978 1.01323 0.86340 1.22261 0.99464 0.95568 1.01153 1.21578 0.93028 0.97543 1.04995 1.19916 0.89078 0.83035 0.78192 1.90750 1.70672 1.34326 1.46274 1.47189 1.11304 1.08656 1.65001 1.21956 0.76551 1.01243 1.01427 1.19344 0.94156 0.97223 0.91549 1.21124 0.91329 1.46988 0.96299 0.92497 1.24995 0.99050 0.95233 0.95053 1.69978 1.34282 1.47097 1.01880 0.86515 0.85264 0.77645 0.78443 1.19681 1.21003 1.21039 1.67788 1.07995 1.19610 1.27559 1.22752 0.88879 0.90147 0.96081 0.83626 0.83189 0.89412 0.89398 0.90346 0.89613 0.90285 0.90846 0.88255 0.88272 0.91829 0.90501 0.96021 0.96660 0.93046 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.36 18.54 41.84 0.78 -3.58 16 2 C 0.26 2.05 15.37 -22.47 -0.35 1.70 16 3 C -0.12 -0.71 5.75 -106.67 -0.61 -1.33 16 4 C -0.01 -0.03 9.85 -39.27 -0.39 -0.42 16 5 C -0.18 -1.10 9.09 -39.65 -0.36 -1.46 16 6 C 0.35 2.73 4.38 -155.20 -0.68 2.05 16 7 N -0.46 -4.05 5.28 -161.56 -0.85 -4.91 16 8 C 0.04 0.32 5.65 -2.53 -0.01 0.31 16 9 C -0.15 -1.48 5.76 -25.36 -0.15 -1.63 16 10 C 0.15 1.85 3.16 -67.42 -0.21 1.64 16 11 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 12 C 0.07 0.67 3.06 -65.84 -0.20 0.47 16 13 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 14 C -0.15 -1.33 4.41 -26.71 -0.12 -1.45 16 15 C -0.13 -1.50 6.07 -28.11 -0.17 -1.67 16 16 C 0.51 8.61 7.47 -11.82 -0.09 8.52 16 17 O -0.54 -11.86 16.19 5.56 0.09 -11.77 16 18 N -0.59 -9.55 2.43 -166.30 -0.40 -9.96 16 19 C 0.11 2.19 5.03 -4.04 -0.02 2.17 16 20 C 0.02 0.38 5.28 -27.88 -0.15 0.24 16 21 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 22 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 25 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 N -0.52 -4.02 8.10 -12.11 -0.10 -4.12 16 30 C 0.18 1.12 10.92 -17.10 -0.19 0.94 16 31 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.78 6.14 -51.93 -0.32 0.46 16 35 H 0.08 0.84 7.97 -51.93 -0.41 0.42 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.77 6.57 -51.93 -0.34 0.43 16 38 H 0.07 0.58 6.74 -51.93 -0.35 0.23 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.16 7.81 -51.93 -0.41 0.75 16 42 H 0.08 1.69 7.14 -51.93 -0.37 1.32 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.17 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -34.23 378.23 -9.57 -43.80 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.39 Total: -2.66 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -4.10 Total: -3.12 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.16 Total: -48.43 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.23 -9.57 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274677982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.003 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds