Wall clock time and date at job start Sat Apr 11 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40359 * 120.47762 * 232.15805 * 3 2 1 5 5 C 1.36889 * 118.48271 * 179.72466 * 4 3 2 6 6 C 1.39351 * 119.38955 * 0.50148 * 5 4 3 7 7 N 1.38589 * 119.53705 * 179.76299 * 6 5 4 8 8 C 1.48623 * 110.99972 * 297.17752 * 7 6 5 9 9 C 1.55170 * 103.36168 * 200.84795 * 8 7 6 10 10 C 1.53602 * 102.66088 * 36.57497 * 9 8 7 11 11 C 1.53626 * 110.83692 * 99.48748 * 10 9 8 12 12 C 1.54707 * 101.50915 * 96.90189 * 11 10 9 13 13 N 1.46876 * 105.51709 * 24.53675 * 12 11 10 14 14 C 1.46501 * 124.37160 * 163.17266 * 13 12 11 15 15 C 1.53007 * 109.46905 * 89.99707 * 14 13 12 16 16 C 1.50701 * 109.47059 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00054 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00246 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00243 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99587 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46996 * 90.00566 * 20 18 16 22 22 H 1.48503 * 109.47148 * 210.00081 * 20 18 16 23 23 H 1.48498 * 109.47338 * 330.00290 * 20 18 16 24 24 C 1.34752 * 111.25912 * 343.17229 * 13 12 11 25 25 O 1.21281 * 125.13241 * 181.00349 * 24 13 12 26 26 C 1.48190 * 111.00320 * 179.72581 * 7 6 5 27 27 N 1.32570 * 120.93511 * 359.48941 * 6 5 4 28 28 C 1.31712 * 121.64069 * 0.25169 * 27 6 5 29 29 H 1.07992 * 120.75635 * 0.02562 * 4 3 2 30 30 H 1.08007 * 120.30421 * 180.24352 * 5 4 3 31 31 H 1.09001 * 110.64287 * 319.31639 * 8 7 6 32 32 H 1.09000 * 110.64761 * 82.38150 * 8 7 6 33 33 H 1.09001 * 110.77018 * 278.28800 * 9 8 7 34 34 H 1.08995 * 110.77118 * 154.87157 * 9 8 7 35 35 H 1.08995 * 111.01936 * 338.84317 * 11 10 9 36 36 H 1.09005 * 111.01542 * 214.95874 * 11 10 9 37 37 H 1.09002 * 110.23296 * 143.54598 * 12 11 10 38 38 H 1.08998 * 110.23544 * 265.43597 * 12 11 10 39 39 H 1.08994 * 109.47666 * 209.99968 * 14 13 12 40 40 H 1.09002 * 109.47149 * 330.00167 * 14 13 12 41 41 H 1.09001 * 109.47133 * 299.99896 * 15 14 13 42 42 H 1.08998 * 109.47233 * 60.00557 * 15 14 13 43 43 H 0.97003 * 120.00209 * 180.02562 * 19 18 16 44 44 H 1.08999 * 110.01417 * 26.35429 * 26 7 6 45 45 H 1.08998 * 110.05577 * 264.98198 * 26 7 6 46 46 H 1.07998 * 119.74545 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2796 0.7431 0.9553 5 6 4.6477 0.7099 0.9212 6 6 5.2892 -0.0449 -0.0589 7 7 6.6742 -0.0767 -0.0993 8 6 7.2304 1.2754 -0.3659 9 6 8.6545 0.9774 -0.9052 10 6 8.4410 -0.2994 -1.7321 11 6 8.3257 0.0313 -3.2279 12 6 9.7704 -0.2322 -3.7145 13 7 10.3407 -1.1860 -2.7541 14 6 11.5442 -1.9852 -2.9976 15 6 12.7751 -1.2119 -2.5202 16 6 14.0131 -2.0337 -2.7711 17 1 13.9304 -3.0097 -3.2260 18 6 15.2515 -1.5395 -2.4200 19 7 16.3319 -2.2565 -2.6395 20 14 15.3947 0.1489 -1.6339 21 1 15.3045 0.0168 -0.1575 22 1 16.7006 0.7552 -1.9977 23 1 14.2929 1.0170 -2.1215 24 6 9.6141 -1.2311 -1.6202 25 8 9.8687 -1.9200 -0.6550 26 6 7.1537 -0.9375 -1.2062 27 7 4.5936 -0.7374 -0.9500 28 6 3.2764 -0.7373 -0.9497 29 1 2.7597 1.3233 1.7031 30 1 5.2246 1.2670 1.6447 31 1 6.6356 1.7943 -1.1176 32 1 7.2821 1.8580 0.5540 33 1 9.3483 0.7948 -0.0846 34 1 9.0071 1.7927 -1.5369 35 1 8.0469 1.0743 -3.3774 36 1 7.6190 -0.6353 -3.7223 37 1 9.7583 -0.6658 -4.7145 38 1 10.3437 0.6948 -3.7129 39 1 11.4721 -2.9261 -2.4521 40 1 11.6348 -2.1898 -4.0644 41 1 12.8472 -0.2710 -3.0658 42 1 12.6845 -1.0073 -1.4534 43 1 17.2031 -1.9090 -2.3921 44 1 6.4061 -0.9773 -1.9984 45 1 7.3591 -1.9420 -0.8365 46 1 2.7404 -1.3122 -1.6903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274678302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:28 Heat of formation + Delta-G solvation = 56.716044 kcal Electronic energy + Delta-G solvation = -28672.612473 eV Core-core repulsion = 24755.878183 eV Total energy + Delta-G solvation = -3916.734290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69312 -40.58098 -38.27428 -36.88509 -36.14103 -34.35406 -33.31454 -32.85054 -31.48231 -29.85093 -29.58771 -28.28193 -25.58402 -24.64098 -24.47565 -23.20240 -22.08481 -21.48919 -20.25341 -19.55320 -18.82914 -17.89780 -17.25877 -16.99279 -16.36584 -15.80169 -15.42262 -15.19535 -14.99269 -14.91979 -14.35539 -14.30354 -14.17525 -13.84108 -13.77577 -13.69202 -13.39917 -12.99994 -12.91442 -12.80805 -12.79857 -12.52362 -12.46491 -12.27224 -12.15687 -11.86677 -11.58684 -11.21217 -11.04416 -10.86951 -10.54576 -10.45692 -10.35030 -10.15335 -9.97608 -9.85959 -9.41677 -9.23334 -8.63468 -8.58047 -8.21565 -6.08850 -4.07989 0.07341 0.69826 2.18911 2.42957 2.80660 3.04949 3.28787 3.33851 3.34992 3.35878 3.37752 3.44666 3.82438 4.07872 4.14494 4.19556 4.34551 4.41528 4.49080 4.55297 4.64820 4.77054 4.88668 5.08259 5.12426 5.14950 5.21328 5.25397 5.29841 5.42689 5.48378 5.51659 5.56691 5.60582 5.71009 5.78015 5.85119 5.92957 5.94702 6.11212 6.27723 6.56183 6.62372 6.77981 6.99712 7.14738 7.28469 7.35100 7.57618 7.72249 8.44263 8.52592 8.94176 9.52912 11.04222 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.002152 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.280299 B =13010.290767 C =13331.259394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.262 3.738 3 C -0.120 4.120 4 C -0.005 4.005 5 C -0.181 4.181 6 C 0.340 3.660 7 N -0.458 5.458 8 C 0.049 3.951 9 C -0.103 4.103 10 C -0.111 4.111 11 C -0.122 4.122 12 C 0.101 3.899 13 N -0.614 5.614 14 C 0.137 3.863 15 C -0.024 4.024 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.527 3.473 25 O -0.519 6.519 26 C 0.061 3.939 27 N -0.518 5.518 28 C 0.186 3.814 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.047 11.145 1.748 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.053 4.053 3 C -0.127 4.127 4 C -0.033 4.033 5 C -0.204 4.204 6 C 0.107 3.893 7 N -0.174 5.174 8 C -0.076 4.076 9 C -0.141 4.141 10 C -0.115 4.115 11 C -0.160 4.160 12 C -0.022 4.022 13 N -0.347 5.347 14 C 0.017 3.983 15 C -0.062 4.062 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.192 1.192 24 C 0.312 3.688 25 O -0.395 6.395 26 C -0.065 4.065 27 N -0.231 5.231 28 C 0.024 3.976 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -26.655 10.039 2.128 28.562 hybrid contribution 0.119 1.485 0.434 1.552 sum -26.535 11.524 2.561 29.043 Atomic orbital electron populations 1.81297 1.11912 1.08398 1.07812 1.25381 0.92232 0.93801 0.93934 1.16896 0.85551 1.07158 1.03099 1.21215 0.93588 0.93513 0.94991 1.21275 0.94433 1.03732 1.00920 1.20295 0.90467 0.89327 0.89198 1.61754 1.02671 1.10345 1.42583 1.23416 0.95059 0.87640 1.01445 1.22419 0.96424 0.95296 0.99970 1.21582 0.95856 0.96988 0.97058 1.22733 0.97126 1.03055 0.93055 1.22085 0.92872 0.93681 0.93606 1.48659 1.27857 1.41772 1.16419 1.21606 0.81913 0.93941 1.00886 1.19890 0.93408 0.96409 0.96508 1.20962 0.89304 1.04379 1.41398 0.90794 1.24976 0.95729 0.97365 0.95114 1.69902 0.98254 1.37746 1.47969 0.86762 0.77300 0.84934 0.80166 1.20192 1.21344 1.19207 1.20059 0.83765 0.82265 0.82701 1.90732 1.72729 1.43037 1.32975 1.22793 0.93803 0.97428 0.92492 1.67770 1.08077 1.23367 1.23910 1.22773 0.88816 0.91889 0.94088 0.83678 0.83371 0.91914 0.88460 0.89244 0.89163 0.89315 0.89629 0.90246 0.91125 0.90502 0.90917 0.96526 0.96576 0.92631 0.88773 0.88676 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.26 18.54 41.84 0.78 -3.48 16 2 C 0.26 2.00 15.37 -22.47 -0.35 1.65 16 3 C -0.12 -0.72 5.75 -106.67 -0.61 -1.33 16 4 C -0.01 -0.03 9.85 -39.27 -0.39 -0.41 16 5 C -0.18 -1.06 9.38 -39.66 -0.37 -1.43 16 6 C 0.34 2.81 6.20 -155.20 -0.96 1.85 16 7 N -0.46 -4.36 5.29 -169.40 -0.90 -5.26 16 8 C 0.05 0.35 6.06 -1.72 -0.01 0.34 16 9 C -0.10 -0.97 6.11 -25.27 -0.15 -1.12 16 10 C -0.11 -1.23 0.77 -155.25 -0.12 -1.35 16 11 C -0.12 -1.02 6.07 -25.51 -0.15 -1.18 16 12 C 0.10 1.13 7.37 -2.94 -0.02 1.11 16 13 N -0.61 -9.90 2.94 -172.53 -0.51 -10.41 16 14 C 0.14 2.68 5.88 -4.04 -0.02 2.66 16 15 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 16 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 17 H 0.07 2.21 7.99 -52.48 -0.42 1.80 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 20 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 C 0.53 8.72 6.63 -11.22 -0.07 8.64 16 25 O -0.52 -10.93 17.18 5.56 0.10 -10.83 16 26 C 0.06 0.67 5.66 -3.11 -0.02 0.65 16 27 N -0.52 -4.33 8.11 -12.12 -0.10 -4.43 16 28 C 0.19 1.18 10.92 -17.10 -0.19 0.99 16 29 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 30 H 0.15 0.63 8.05 -52.48 -0.42 0.20 16 31 H 0.06 0.36 7.99 -51.93 -0.41 -0.05 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 34 H 0.09 0.68 7.64 -51.93 -0.40 0.28 16 35 H 0.09 0.53 7.67 -51.93 -0.40 0.13 16 36 H 0.09 0.64 7.62 -51.93 -0.40 0.25 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.63 7.95 -51.93 -0.41 1.22 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 42 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.09 0.91 5.77 -51.93 -0.30 0.61 16 45 H 0.09 1.29 7.46 -51.93 -0.39 0.90 16 46 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -35.71 383.58 -9.17 -44.88 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.43 Total: -3.76 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.99 Total: -2.76 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.05 Total: -50.37 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.10 Total: -10.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.71 -9.17 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274678302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.595 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds