Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.40356 * 120.48541 * 6.53247 * 3 2 1 5 5 C 1.36890 * 118.49211 * 179.75033 * 4 3 2 6 6 C 1.39365 * 119.38436 * 0.50791 * 5 4 3 7 7 N 1.38583 * 119.53299 * 179.74936 * 6 5 4 8 8 C 1.48925 * 111.01543 * 28.07017 * 7 6 5 9 9 C 1.54459 * 104.68620 * 157.62000 * 8 7 6 10 10 C 1.54498 * 105.13839 * 336.56919 * 9 8 7 11 11 C 1.47400 * 110.99973 * 143.51504 * 7 6 5 12 12 C 1.53575 * 111.07606 * 81.65229 * 11 7 6 13 13 C 1.54710 * 101.51107 * 215.02248 * 12 11 7 14 14 N 1.46884 * 105.52312 * 24.48713 * 13 12 11 15 15 C 1.46499 * 124.37609 * 163.15772 * 14 13 12 16 16 C 1.53008 * 109.46700 * 90.00722 * 15 14 13 17 17 C 1.50700 * 109.47132 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00220 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99808 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00443 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46771 * 59.99574 * 21 19 17 23 23 H 1.48495 * 109.47253 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47079 * 300.00223 * 21 19 17 25 25 C 1.34756 * 111.25196 * 343.18570 * 14 13 12 26 26 O 1.21285 * 125.13985 * 181.02828 * 25 14 13 27 27 N 1.32568 * 120.93232 * 359.48091 * 6 5 4 28 28 C 1.31714 * 121.64119 * 0.26982 * 27 6 5 29 29 H 1.08000 * 120.75507 * 0.04249 * 4 3 2 30 30 H 1.07996 * 120.30780 * 180.26597 * 5 4 3 31 31 H 1.08989 * 110.36025 * 38.85108 * 8 7 6 32 32 H 1.09007 * 110.47426 * 276.44241 * 8 7 6 33 33 H 1.09004 * 110.32508 * 217.62690 * 9 8 7 34 34 H 1.09002 * 110.32555 * 95.51722 * 9 8 7 35 35 H 1.08993 * 110.37949 * 119.49959 * 10 9 8 36 36 H 1.09000 * 110.38030 * 241.86860 * 10 9 8 37 37 H 1.08998 * 111.02010 * 333.07894 * 12 11 7 38 38 H 1.08999 * 111.01696 * 96.96706 * 12 11 7 39 39 H 1.09000 * 110.24230 * 143.50246 * 13 12 11 40 40 H 1.09004 * 110.23823 * 265.48029 * 13 12 11 41 41 H 1.08996 * 109.47844 * 210.00367 * 15 14 13 42 42 H 1.08999 * 109.47735 * 330.01182 * 15 14 13 43 43 H 1.09000 * 109.46918 * 299.99660 * 16 15 14 44 44 H 1.08996 * 109.47450 * 60.00236 * 16 15 14 45 45 H 0.97003 * 120.00080 * 179.97438 * 20 19 17 46 46 H 1.08005 * 119.74325 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2805 -1.2007 -0.1376 5 6 4.6485 -1.1522 -0.1374 6 6 5.2892 0.0768 0.0090 7 7 6.6740 0.1288 0.0148 8 6 7.2539 -0.9909 -0.7776 9 6 8.6685 -0.5056 -1.1640 10 6 8.5978 1.0364 -1.0991 11 6 7.1599 1.3434 -0.6645 12 6 7.1139 2.5574 0.2749 13 6 6.7479 3.6947 -0.7081 14 7 6.0623 3.0393 -1.8297 15 6 5.2349 3.7387 -2.8158 16 6 6.1090 4.1866 -3.9891 17 6 5.2581 4.9066 -5.0033 18 1 4.1996 5.0319 -4.8287 19 6 5.8306 5.4045 -6.1545 20 7 7.1194 5.2516 -6.3673 21 14 4.7757 6.2964 -7.4120 22 1 4.1501 7.4852 -6.7792 23 1 5.6241 6.7312 -8.5506 24 1 3.7145 5.3823 -7.9055 25 6 6.2922 1.7115 -1.8341 26 8 5.8631 0.9315 -2.6578 27 7 4.5926 1.1974 0.1373 28 6 3.2754 1.1960 0.1373 29 1 2.7613 -2.1415 -0.2460 30 1 5.2260 -2.0584 -0.2457 31 1 6.6572 -1.1716 -1.6715 32 1 7.3151 -1.8950 -0.1718 33 1 8.9176 -0.8310 -2.1741 34 1 9.4049 -0.8812 -0.4535 35 1 9.3062 1.4182 -0.3640 36 1 8.7980 1.4672 -2.0801 37 1 6.3426 2.4346 1.0351 38 1 8.0872 2.7346 0.7326 39 1 6.0823 4.4105 -0.2257 40 1 7.6506 4.1952 -1.0587 41 1 4.4563 3.0677 -3.1784 42 1 4.7754 4.6112 -2.3514 43 1 6.8876 4.8578 -3.6266 44 1 6.5685 3.3142 -4.4537 45 1 7.5221 5.6016 -7.1774 46 1 2.7387 2.1272 0.2435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274678765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = 57.758226 kcal Electronic energy + Delta-G solvation = -30395.547745 eV Core-core repulsion = 26478.858647 eV Total energy + Delta-G solvation = -3916.689098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94791 -39.90304 -37.78208 -36.60287 -36.05096 -33.76906 -33.29974 -32.80126 -31.77379 -29.69479 -29.13371 -27.77185 -25.23179 -24.56802 -24.06464 -23.20536 -21.95245 -21.24700 -20.44294 -19.18594 -18.98865 -17.58980 -16.85906 -16.57703 -16.03377 -15.40580 -15.30548 -15.03180 -14.95040 -14.67476 -14.45821 -14.25668 -13.85227 -13.54600 -13.47279 -13.14904 -13.01826 -12.96552 -12.76702 -12.65790 -12.46865 -12.37878 -12.25340 -11.94435 -11.60936 -11.44274 -11.32656 -11.23515 -10.93863 -10.75586 -10.63623 -10.50834 -10.10927 -9.98582 -9.86706 -9.66980 -9.39189 -9.18253 -8.38646 -8.27863 -7.98248 -6.03935 -4.07311 0.42574 1.03901 2.50035 2.62776 2.97138 3.32021 3.33313 3.36176 3.38198 3.52339 3.73075 3.77131 4.07517 4.27994 4.36765 4.44209 4.50413 4.58025 4.70980 4.81249 4.87897 5.00738 5.13910 5.20171 5.32411 5.36561 5.39758 5.48639 5.52594 5.58280 5.70084 5.76165 5.81782 5.86564 5.90343 5.90664 6.04380 6.06640 6.17704 6.37063 6.46222 6.74004 6.79832 7.00606 7.31282 7.49489 7.64527 7.70603 7.83758 7.95384 8.31841 8.62138 8.98993 9.56873 11.07416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.003948 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.993670 B = 7090.550146 C = 8887.331014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.266 3.734 3 C -0.123 4.123 4 C 0.000 4.000 5 C -0.200 4.200 6 C 0.348 3.652 7 N -0.432 5.432 8 C 0.032 3.968 9 C -0.122 4.122 10 C -0.108 4.108 11 C 0.070 3.930 12 C -0.108 4.108 13 C 0.106 3.894 14 N -0.593 5.593 15 C 0.131 3.869 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.516 3.484 26 O -0.535 6.535 27 N -0.500 5.500 28 C 0.193 3.807 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.017 0.983 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -12.276 18.076 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.050 4.050 3 C -0.130 4.130 4 C -0.028 4.028 5 C -0.223 4.223 6 C 0.115 3.885 7 N -0.147 5.147 8 C -0.094 4.094 9 C -0.160 4.160 10 C -0.146 4.146 11 C -0.021 4.021 12 C -0.146 4.146 13 C -0.018 4.018 14 N -0.325 5.325 15 C 0.011 3.989 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C 0.300 3.700 26 O -0.412 6.412 27 N -0.213 5.213 28 C 0.031 3.969 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.862 -11.817 18.095 21.692 hybrid contribution -0.759 -0.137 -1.542 1.724 sum 1.104 -11.954 16.553 20.448 Atomic orbital electron populations 1.81258 1.11902 1.07065 1.09639 1.25368 0.92231 0.94000 0.93375 1.16852 0.85541 0.96294 1.14341 1.21122 0.93538 0.97184 0.90946 1.21423 0.94923 0.98634 1.07314 1.20143 0.90107 0.89549 0.88749 1.61674 1.03310 1.04665 1.45028 1.23527 0.95991 0.92966 0.96931 1.22363 0.95868 0.95142 1.02591 1.22219 0.92919 0.96410 1.03074 1.22121 0.95805 0.90636 0.93576 1.22579 1.03459 0.91255 0.97339 1.22076 0.97467 0.95522 0.86750 1.48401 1.48633 1.07270 1.28171 1.21769 0.93280 0.94934 0.88885 1.19394 0.95147 0.96507 0.91418 1.21041 0.94827 1.36217 1.04034 0.92610 1.24979 0.94954 0.96137 0.98055 1.69959 1.10417 1.46027 1.26783 0.86631 0.80272 0.80086 0.80875 1.20155 1.21229 1.20176 1.20419 0.80645 0.83274 0.85634 1.90695 1.54506 1.54027 1.42020 1.67619 1.07865 1.28290 1.17536 1.22731 0.88735 0.96499 0.88956 0.83928 0.83727 0.90232 0.88956 0.90173 0.90351 0.89421 0.89881 0.88183 0.89601 0.90396 0.91262 0.91543 0.91605 0.96438 0.96272 0.92887 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.97 18.54 41.84 0.78 -5.19 16 2 C 0.27 3.20 15.37 -22.48 -0.35 2.85 16 3 C -0.12 -1.34 5.75 -106.68 -0.61 -1.95 16 4 C 0.00 0.00 9.85 -39.27 -0.39 -0.39 16 5 C -0.20 -2.03 8.77 -39.65 -0.35 -2.38 16 6 C 0.35 4.29 5.10 -155.20 -0.79 3.50 16 7 N -0.43 -5.00 5.17 -156.53 -0.81 -5.81 16 8 C 0.03 0.31 4.76 -1.93 -0.01 0.30 16 9 C -0.12 -1.12 7.01 -25.18 -0.18 -1.30 16 10 C -0.11 -1.19 6.17 -25.78 -0.16 -1.35 16 11 C 0.07 0.90 0.53 -132.25 -0.07 0.83 16 12 C -0.11 -1.19 5.93 -25.53 -0.15 -1.34 16 13 C 0.11 1.40 7.37 -2.93 -0.02 1.38 16 14 N -0.59 -10.39 2.94 -172.53 -0.51 -10.90 16 15 C 0.13 2.74 5.88 -4.04 -0.02 2.72 16 16 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 17 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.52 9.02 4.49 -11.23 -0.05 8.97 16 26 O -0.54 -11.29 15.75 5.55 0.09 -11.20 16 27 N -0.50 -6.47 6.54 -12.11 -0.08 -6.55 16 28 C 0.19 2.23 10.92 -17.10 -0.19 2.04 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.15 1.11 6.56 -52.49 -0.34 0.77 16 31 H 0.08 0.96 6.55 -51.94 -0.34 0.62 16 32 H 0.09 0.65 7.73 -51.92 -0.40 0.25 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.76 7.45 -51.93 -0.39 0.37 16 36 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 37 H 0.10 1.13 6.78 -51.93 -0.35 0.78 16 38 H 0.09 0.74 7.45 -51.93 -0.39 0.35 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.49 7.95 -51.93 -0.41 1.08 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -34.88 378.33 -9.39 -44.27 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.38 Total: -1.60 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -3.89 Total: 0.67 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.12 Total: -54.50 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.88 -9.39 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274678765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.027 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds