Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99773 * 2 1 4 4 H 1.48503 * 109.47096 * 270.00445 * 3 2 1 5 5 H 1.48497 * 109.47052 * 29.99848 * 3 2 1 6 6 H 1.48498 * 109.47349 * 149.99915 * 3 2 1 7 7 C 1.38814 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99794 * 190.90463 * 7 2 1 9 9 N 1.36933 * 119.99721 * 10.90788 * 7 2 1 10 10 C 1.46918 * 120.63238 * 31.66132 * 9 7 2 11 11 C 1.53201 * 108.77433 * 126.37365 * 10 9 7 12 12 C 1.53037 * 109.31073 * 54.63385 * 11 10 9 13 13 C 1.53009 * 109.45647 * 178.63017 * 12 11 10 14 14 O 1.42900 * 109.46684 * 180.72095 * 13 12 11 15 15 N 1.46499 * 109.46204 * 58.66036 * 12 11 10 16 16 C 1.34772 * 119.99963 * 62.81558 * 15 12 11 17 17 O 1.21603 * 120.00210 * 354.78369 * 16 15 12 18 18 C 1.47432 * 120.00037 * 175.06343 * 16 15 12 19 19 C 1.41287 * 126.41254 * 0.02562 * 18 16 15 20 20 N 1.30446 * 108.02679 * 179.97438 * 19 18 16 21 21 N 1.39936 * 108.89426 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.75379 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.47037 * 304.96508 * 22 21 20 24 24 F 1.39894 * 109.47120 * 180.02562 * 23 22 21 25 25 C 1.34267 * 108.48933 * 359.74148 * 21 20 19 26 26 C 1.53042 * 109.53750 * 298.63352 * 12 11 10 27 27 C 1.46930 * 120.62833 * 211.64453 * 9 7 2 28 28 H 0.97001 * 120.00718 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58820 * 6.58889 * 10 9 7 30 30 H 1.09002 * 109.70937 * 246.22800 * 10 9 7 31 31 H 1.08999 * 109.49287 * 294.68109 * 11 10 9 32 32 H 1.09000 * 109.49608 * 174.58756 * 11 10 9 33 33 H 1.08995 * 109.46811 * 300.71977 * 13 12 11 34 34 H 1.08997 * 109.46916 * 60.72469 * 13 12 11 35 35 H 0.96705 * 113.99652 * 179.97438 * 14 13 12 36 36 H 0.97002 * 119.99788 * 242.82372 * 15 12 11 37 37 H 1.08010 * 125.99154 * 0.02562 * 19 18 16 38 38 H 1.08998 * 109.47870 * 64.97089 * 22 21 20 39 39 H 1.09005 * 109.47177 * 184.97325 * 22 21 20 40 40 H 1.08995 * 109.46840 * 300.00704 * 23 22 21 41 41 H 1.09005 * 109.46470 * 60.00383 * 23 22 21 42 42 H 1.08002 * 126.28994 * 180.26511 * 25 21 20 43 43 H 1.09010 * 109.49338 * 181.31578 * 26 12 11 44 44 H 1.08990 * 109.50171 * 301.41267 * 26 12 11 45 45 H 1.09002 * 109.58269 * 353.41639 * 27 9 7 46 46 H 1.08997 * 109.58576 * 113.83624 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0756 -1.2105 0.1764 9 7 1.3442 -2.3772 -0.2255 10 6 0.1654 -2.4136 -1.1015 11 6 0.3812 -3.4859 -2.1742 12 6 0.7034 -4.8205 -1.4981 13 6 0.8860 -5.9015 -2.5654 14 8 1.1703 -7.1514 -1.9336 15 7 -0.3980 -5.1949 -0.6076 16 6 -1.6246 -5.4288 -1.1145 17 8 -1.8411 -5.2374 -2.2957 18 6 -2.7058 -5.9108 -0.2356 19 6 -2.6074 -6.1713 1.1495 20 7 -3.7735 -6.5804 1.5672 21 7 -4.6606 -6.6015 0.4852 22 6 -6.0687 -7.0019 0.5404 23 6 -6.1766 -8.4061 1.1385 24 9 -7.5212 -8.7887 1.1907 25 6 -4.0052 -6.1870 -0.6109 26 6 1.9928 -4.6842 -0.6851 27 6 1.7951 -3.6257 0.4045 28 1 -0.4851 0.8400 -0.0004 29 1 0.0336 -1.4419 -1.5775 30 1 -0.7209 -2.6565 -0.5153 31 1 1.2110 -3.1945 -2.8181 32 1 -0.5244 -3.5901 -2.7719 33 1 -0.0282 -5.9907 -3.1523 34 1 1.7133 -5.6291 -3.2206 35 1 1.2978 -7.8843 -2.5514 36 1 -0.2443 -5.2744 0.3469 37 1 -1.7220 -6.0518 1.7565 38 1 -6.6224 -6.2986 1.1623 39 1 -6.4859 -7.0030 -0.4667 40 1 -5.6229 -9.1094 0.5166 41 1 -5.7593 -8.4050 2.1455 42 1 -4.4182 -6.0896 -1.6041 43 1 2.2342 -5.6414 -0.2228 44 1 2.8074 -4.3816 -1.3429 45 1 2.7388 -3.4536 0.9222 46 1 1.0433 -3.9686 1.1152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274916949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = -31.210463 kcal Electronic energy + Delta-G solvation = -30643.596581 eV Core-core repulsion = 26292.280287 eV Total energy + Delta-G solvation = -4351.316294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.17674 -41.48165 -39.82887 -37.27014 -36.06191 -34.51142 -33.94221 -31.91060 -30.75873 -30.39302 -29.74627 -28.90299 -26.67014 -24.28265 -23.85266 -23.08815 -22.21002 -21.09931 -20.75851 -19.97560 -18.54772 -18.13927 -17.13780 -16.88893 -16.77365 -16.38270 -15.87927 -15.44257 -15.08492 -15.02056 -14.83357 -14.44164 -14.23322 -14.09864 -13.83906 -13.40378 -13.37406 -13.18754 -13.05167 -12.84867 -12.56804 -12.33742 -11.96695 -11.81646 -11.48524 -11.36899 -11.21151 -11.02170 -10.84538 -10.72646 -10.32866 -10.23431 -10.01200 -9.89815 -9.75568 -9.68815 -9.51463 -9.01665 -8.80098 -8.44299 -8.41332 -6.57500 -5.74816 -3.23420 1.46355 2.01333 2.18010 3.38848 3.45440 3.46519 3.60082 3.74994 3.82746 4.11115 4.46201 4.49626 4.50205 4.51498 4.63218 4.75296 4.92740 5.11641 5.25213 5.32872 5.38725 5.40848 5.47494 5.58041 5.70370 5.72907 5.84767 5.98951 6.15048 6.27783 6.33260 6.40712 6.56932 6.59814 6.70817 6.72936 6.84466 6.95965 7.14008 7.37875 7.44934 7.76710 7.80920 7.82806 8.04979 8.51147 8.70995 9.25872 9.87308 10.45807 11.32604 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002979 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.758800 B = 9395.704340 C =10673.102362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.182 3.818 11 C -0.153 4.153 12 C 0.197 3.803 13 C 0.061 3.939 14 O -0.568 6.568 15 N -0.695 5.695 16 C 0.599 3.401 17 O -0.556 6.556 18 C -0.277 4.277 19 C 0.091 3.909 20 N -0.300 5.300 21 N -0.369 5.369 22 C 0.104 3.896 23 C 0.053 3.947 24 F -0.208 7.208 25 C 0.126 3.874 26 C -0.134 4.134 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.085 0.915 30 H 0.019 0.981 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.369 0.631 36 H 0.397 0.603 37 H 0.191 0.809 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.188 0.812 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -17.591 -1.500 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.056 3.944 11 C -0.193 4.193 12 C 0.111 3.889 13 C -0.017 4.017 14 O -0.372 6.372 15 N -0.344 5.344 16 C 0.387 3.613 17 O -0.436 6.436 18 C -0.292 4.292 19 C -0.097 4.097 20 N -0.120 5.120 21 N -0.149 5.149 22 C -0.018 4.018 23 C -0.003 4.003 24 F -0.189 7.189 25 C -0.024 4.024 26 C -0.173 4.173 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.214 0.786 36 H 0.232 0.768 37 H 0.208 0.792 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.205 0.795 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -9.143 -17.373 -0.751 19.647 hybrid contribution 0.923 0.873 -0.772 1.486 sum -8.220 -16.501 -1.523 18.498 Atomic orbital electron populations 1.69982 1.05222 1.25389 1.54036 1.25170 0.95371 0.98359 1.00496 0.86282 0.79025 0.83712 0.77647 1.21468 1.21772 1.20457 1.19162 0.90840 0.83998 1.44323 0.91886 1.44036 1.32592 1.03348 1.51445 1.20650 0.88129 0.96459 0.89147 1.22610 1.01745 0.94523 1.00376 1.20265 0.86428 0.92766 0.89413 1.22776 0.99771 0.83851 0.95309 1.86476 1.94308 1.18780 1.37665 1.45639 1.08527 1.69362 1.10897 1.17053 0.81427 0.76367 0.86493 1.90670 1.82474 1.53903 1.16570 1.20415 0.95411 1.18541 0.94844 1.24131 0.96213 0.95599 0.93794 1.77134 1.00339 1.25165 1.09351 1.48200 1.09604 1.50840 1.06282 1.22263 0.77604 0.97084 1.04895 1.22161 0.78573 0.95087 1.04430 1.92798 1.35876 1.92189 1.98064 1.22950 0.91815 0.94721 0.92910 1.22247 0.95514 0.99882 0.99690 1.20900 0.97663 0.87211 0.92393 0.93671 0.89676 0.96294 0.92204 0.90815 0.91644 0.93615 0.78574 0.76782 0.79214 0.88154 0.87149 0.89999 0.88943 0.79499 0.91686 0.91070 0.92580 0.96806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.09 55.49 0.62 -25.59 16 2 C 0.00 0.14 5.04 -17.43 -0.09 0.05 16 3 Si 0.90 21.69 29.57 -169.99 -5.03 16.67 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 8 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -14.48 2.98 -172.32 -0.51 -14.99 16 10 C 0.18 4.38 4.99 -3.71 -0.02 4.36 16 11 C -0.15 -3.06 4.71 -26.61 -0.13 -3.18 16 12 C 0.20 3.37 0.44 -131.77 -0.06 3.31 16 13 C 0.06 0.93 5.68 37.16 0.21 1.14 16 14 O -0.57 -7.68 12.84 -35.23 -0.45 -8.13 16 15 N -0.69 -11.26 3.97 -48.63 -0.19 -11.45 16 16 C 0.60 9.92 7.22 -12.52 -0.09 9.83 16 17 O -0.56 -10.42 13.15 5.28 0.07 -10.35 16 18 C -0.28 -3.87 6.13 -105.07 -0.64 -4.51 16 19 C 0.09 1.14 11.50 -16.98 -0.20 0.95 16 20 N -0.30 -3.73 12.33 30.86 0.38 -3.35 16 21 N -0.37 -3.84 3.65 -60.80 -0.22 -4.07 16 22 C 0.10 0.71 6.94 -4.04 -0.03 0.68 16 23 C 0.05 0.36 7.73 37.16 0.29 0.64 16 24 F -0.21 -1.72 17.36 2.25 0.04 -1.69 16 25 C 0.13 1.45 11.25 -16.56 -0.19 1.26 16 26 C -0.13 -2.27 4.85 -26.61 -0.13 -2.40 16 27 C 0.15 2.90 6.24 -3.71 -0.02 2.88 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.09 2.34 6.13 -51.93 -0.32 2.02 16 30 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.52 6.24 -51.93 -0.32 1.20 16 33 H 0.07 1.07 6.16 -51.93 -0.32 0.75 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.37 3.34 9.12 45.56 0.42 3.76 16 36 H 0.40 5.97 6.15 -40.82 -0.25 5.71 16 37 H 0.19 1.98 7.51 -52.48 -0.39 1.58 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.49 8.06 -51.93 -0.42 0.07 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.06 1.01 7.66 -51.92 -0.40 0.61 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 46 H 0.01 0.27 6.88 -51.93 -0.36 -0.08 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -33.94 373.21 -6.60 -40.53 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.69 Total: 8.80 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.23 Total: 8.00 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.07 Total: -59.45 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.38 Total: -18.48 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.94 -6.60 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274916949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.324 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds