Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99773 * 2 1 4 4 H 1.48503 * 109.47096 * 270.00445 * 3 2 1 5 5 H 1.48497 * 109.47052 * 29.99848 * 3 2 1 6 6 H 1.48498 * 109.47349 * 149.99915 * 3 2 1 7 7 C 1.38814 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99794 * 190.90463 * 7 2 1 9 9 N 1.36933 * 119.99721 * 10.90788 * 7 2 1 10 10 C 1.46918 * 120.63238 * 31.66132 * 9 7 2 11 11 C 1.53201 * 108.77433 * 126.37365 * 10 9 7 12 12 C 1.53037 * 109.31073 * 54.63385 * 11 10 9 13 13 C 1.53009 * 109.45647 * 178.63017 * 12 11 10 14 14 O 1.42900 * 109.46684 * 180.72095 * 13 12 11 15 15 N 1.46499 * 109.46204 * 58.66036 * 12 11 10 16 16 C 1.34772 * 119.99963 * 62.81558 * 15 12 11 17 17 O 1.21603 * 120.00210 * 354.78369 * 16 15 12 18 18 C 1.47432 * 120.00037 * 175.06343 * 16 15 12 19 19 C 1.41287 * 126.41254 * 0.02562 * 18 16 15 20 20 N 1.30446 * 108.02679 * 179.97438 * 19 18 16 21 21 N 1.39936 * 108.89426 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.75379 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.47037 * 304.96508 * 22 21 20 24 24 F 1.39894 * 109.47120 * 180.02562 * 23 22 21 25 25 C 1.34267 * 108.48933 * 359.74148 * 21 20 19 26 26 C 1.53042 * 109.53750 * 298.63352 * 12 11 10 27 27 C 1.46930 * 120.62833 * 211.64453 * 9 7 2 28 28 H 0.97001 * 120.00718 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58820 * 6.58889 * 10 9 7 30 30 H 1.09002 * 109.70937 * 246.22800 * 10 9 7 31 31 H 1.08999 * 109.49287 * 294.68109 * 11 10 9 32 32 H 1.09000 * 109.49608 * 174.58756 * 11 10 9 33 33 H 1.08995 * 109.46811 * 300.71977 * 13 12 11 34 34 H 1.08997 * 109.46916 * 60.72469 * 13 12 11 35 35 H 0.96705 * 113.99652 * 179.97438 * 14 13 12 36 36 H 0.97002 * 119.99788 * 242.82372 * 15 12 11 37 37 H 1.08010 * 125.99154 * 0.02562 * 19 18 16 38 38 H 1.08998 * 109.47870 * 64.97089 * 22 21 20 39 39 H 1.09005 * 109.47177 * 184.97325 * 22 21 20 40 40 H 1.08995 * 109.46840 * 300.00704 * 23 22 21 41 41 H 1.09005 * 109.46470 * 60.00383 * 23 22 21 42 42 H 1.08002 * 126.28994 * 180.26511 * 25 21 20 43 43 H 1.09010 * 109.49338 * 181.31578 * 26 12 11 44 44 H 1.08990 * 109.50171 * 301.41267 * 26 12 11 45 45 H 1.09002 * 109.58269 * 353.41639 * 27 9 7 46 46 H 1.08997 * 109.58576 * 113.83624 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0756 -1.2105 0.1764 9 7 1.3442 -2.3772 -0.2255 10 6 0.1654 -2.4136 -1.1015 11 6 0.3812 -3.4859 -2.1742 12 6 0.7034 -4.8205 -1.4981 13 6 0.8860 -5.9015 -2.5654 14 8 1.1703 -7.1514 -1.9336 15 7 -0.3980 -5.1949 -0.6076 16 6 -1.6246 -5.4288 -1.1145 17 8 -1.8411 -5.2374 -2.2957 18 6 -2.7058 -5.9108 -0.2356 19 6 -2.6074 -6.1713 1.1495 20 7 -3.7735 -6.5804 1.5672 21 7 -4.6606 -6.6015 0.4852 22 6 -6.0687 -7.0019 0.5404 23 6 -6.1766 -8.4061 1.1385 24 9 -7.5212 -8.7887 1.1907 25 6 -4.0052 -6.1870 -0.6109 26 6 1.9928 -4.6842 -0.6851 27 6 1.7951 -3.6257 0.4045 28 1 -0.4851 0.8400 -0.0004 29 1 0.0336 -1.4419 -1.5775 30 1 -0.7209 -2.6565 -0.5153 31 1 1.2110 -3.1945 -2.8181 32 1 -0.5244 -3.5901 -2.7719 33 1 -0.0282 -5.9907 -3.1523 34 1 1.7133 -5.6291 -3.2206 35 1 1.2978 -7.8843 -2.5514 36 1 -0.2443 -5.2744 0.3469 37 1 -1.7220 -6.0518 1.7565 38 1 -6.6224 -6.2986 1.1623 39 1 -6.4859 -7.0030 -0.4667 40 1 -5.6229 -9.1094 0.5166 41 1 -5.7593 -8.4050 2.1455 42 1 -4.4182 -6.0896 -1.6041 43 1 2.2342 -5.6414 -0.2228 44 1 2.8074 -4.3816 -1.3429 45 1 2.7388 -3.4536 0.9222 46 1 1.0433 -3.9686 1.1152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274916949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = -56.127995 kcal Electronic energy + Delta-G solvation = -30644.677086 eV Core-core repulsion = 26292.280287 eV Total energy + Delta-G solvation = -4352.396800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.78233 -42.42547 -41.15960 -38.69584 -37.36510 -35.56775 -35.24114 -33.57187 -32.23669 -31.47135 -31.33895 -29.84916 -28.30220 -25.62050 -24.99138 -24.17923 -23.84286 -22.50494 -21.77310 -21.18933 -20.01500 -19.16101 -18.72991 -17.99420 -17.49325 -17.40316 -16.86538 -16.63219 -16.37323 -16.27031 -16.05476 -15.72755 -15.46017 -15.25771 -15.09989 -14.95489 -14.78683 -14.49487 -14.21021 -14.01353 -13.74146 -13.66929 -13.30859 -13.14664 -12.95219 -12.64488 -12.59545 -12.41712 -12.22277 -12.16191 -11.98930 -11.81103 -11.79789 -11.37844 -11.24281 -10.98678 -10.62298 -10.52505 -10.34534 -9.93804 -9.60779 -8.57583 -7.82980 -5.34186 0.52763 1.16140 1.24196 1.47673 1.48701 1.57385 2.41161 2.52740 2.58607 3.15568 3.30711 3.37726 3.57557 3.74973 3.76317 3.76644 3.91754 3.97740 4.09087 4.17288 4.17780 4.26464 4.35153 4.52522 4.54520 4.58489 4.67666 4.72496 4.77542 4.82432 4.83936 5.04136 5.09347 5.22713 5.24677 5.36482 5.37755 5.52106 5.67367 5.74299 5.79105 5.83061 6.44202 6.45305 6.80033 6.95683 7.19265 7.45739 7.89652 8.42731 9.22034 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002979 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.758800 B = 9395.704340 C =10673.102362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.607 5.607 10 C 0.198 3.802 11 C -0.139 4.139 12 C 0.197 3.803 13 C 0.075 3.925 14 O -0.573 6.573 15 N -0.695 5.695 16 C 0.596 3.404 17 O -0.584 6.584 18 C -0.309 4.309 19 C 0.088 3.912 20 N -0.316 5.316 21 N -0.360 5.360 22 C 0.097 3.903 23 C 0.059 3.941 24 F -0.216 7.216 25 C 0.138 3.862 26 C -0.118 4.118 27 C 0.141 3.859 28 H 0.247 0.753 29 H 0.044 0.956 30 H -0.006 1.006 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.391 0.609 36 H 0.402 0.598 37 H 0.204 0.796 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.210 0.790 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 -19.285 -1.558 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.072 3.928 11 C -0.179 4.179 12 C 0.111 3.889 13 C -0.004 4.004 14 O -0.380 6.380 15 N -0.344 5.344 16 C 0.385 3.615 17 O -0.466 6.466 18 C -0.324 4.324 19 C -0.100 4.100 20 N -0.136 5.136 21 N -0.139 5.139 22 C -0.023 4.023 23 C 0.003 3.997 24 F -0.197 7.197 25 C -0.014 4.014 26 C -0.157 4.157 27 C 0.016 3.984 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.240 0.760 36 H 0.238 0.762 37 H 0.221 0.779 38 H 0.124 0.876 39 H 0.158 0.842 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.227 0.773 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.707 -19.128 -0.783 21.031 hybrid contribution 0.722 1.323 -0.727 1.673 sum -7.985 -17.805 -1.510 19.572 Atomic orbital electron populations 1.70159 1.06678 1.25536 1.55733 1.25912 0.96092 1.01530 1.01035 0.85280 0.78139 0.79666 0.77415 1.21428 1.22402 1.19076 1.19512 0.91276 0.85157 1.43047 0.91454 1.44244 1.32346 1.04252 1.52230 1.20271 0.87426 0.95613 0.89514 1.22364 1.01307 0.95257 0.98984 1.20159 0.86748 0.91985 0.90049 1.22447 0.99757 0.84040 0.94126 1.86407 1.94185 1.18857 1.38568 1.45602 1.08490 1.69248 1.11049 1.17407 0.81841 0.75754 0.86478 1.90644 1.82928 1.55274 1.17802 1.20344 0.95819 1.20960 0.95255 1.24359 0.96861 0.95279 0.93482 1.77100 1.00562 1.25560 1.10336 1.48439 1.10467 1.49575 1.05447 1.22588 0.75665 0.97146 1.06947 1.22109 0.78044 0.95205 1.04316 1.92785 1.36575 1.92253 1.98088 1.23288 0.91157 0.93062 0.93896 1.22081 0.95328 0.99727 0.98580 1.21072 0.97746 0.86157 0.93452 0.94389 0.93802 0.98798 0.92270 0.91695 0.92916 0.92293 0.76001 0.76189 0.77923 0.87571 0.84235 0.89110 0.89551 0.77312 0.89221 0.91088 0.92264 0.96076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.08 11.09 21.65 0.24 -55.84 16 2 C -0.05 -2.82 5.04 84.86 0.43 -2.40 16 3 Si 0.97 45.17 29.57 68.60 2.03 47.20 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.26 -14.14 9.58 84.03 0.80 -13.34 16 8 H 0.07 3.55 7.85 -2.91 -0.02 3.53 16 9 N -0.61 -29.98 2.98 -699.10 -2.09 -32.06 16 10 C 0.20 9.82 4.99 86.37 0.43 10.25 16 11 C -0.14 -5.63 4.71 30.67 0.14 -5.49 16 12 C 0.20 6.51 0.44 3.63 0.00 6.51 16 13 C 0.08 2.12 5.68 71.99 0.41 2.52 16 14 O -0.57 -13.80 12.84 -148.98 -1.91 -15.71 16 15 N -0.69 -22.06 3.97 -426.02 -1.69 -23.75 16 16 C 0.60 19.57 7.22 86.67 0.63 20.20 16 17 O -0.58 -21.90 13.15 -4.04 -0.05 -21.95 16 18 C -0.31 -8.39 6.13 -20.15 -0.12 -8.51 16 19 C 0.09 2.15 11.50 85.65 0.99 3.13 16 20 N -0.32 -7.48 12.33 -56.27 -0.69 -8.17 16 21 N -0.36 -6.86 3.65 -346.28 -1.26 -8.13 16 22 C 0.10 1.10 6.94 86.38 0.60 1.70 16 23 C 0.06 0.68 7.73 71.98 0.56 1.24 16 24 F -0.22 -3.22 17.36 44.97 0.78 -2.44 16 25 C 0.14 2.96 11.25 84.27 0.95 3.91 16 26 C -0.12 -3.78 4.85 30.67 0.15 -3.63 16 27 C 0.14 5.51 6.24 86.36 0.54 6.05 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.04 2.52 6.13 -2.39 -0.01 2.51 16 30 H -0.01 -0.33 7.74 -2.39 -0.02 -0.35 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.74 6.24 -2.39 -0.01 2.73 16 33 H 0.05 1.65 6.16 -2.39 -0.01 1.64 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.39 5.81 9.12 -74.05 -0.68 5.14 16 36 H 0.40 11.74 6.15 -92.71 -0.57 11.17 16 37 H 0.20 4.08 7.51 -2.91 -0.02 4.06 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.14 0.80 8.06 -2.38 -0.02 0.78 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.21 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.09 2.49 7.66 -2.38 -0.02 2.47 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 46 H 0.02 0.81 6.88 -2.39 -0.02 0.79 16 Total: -1.00 -74.27 373.21 1.63 -72.64 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.22 Total: 26.06 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 6.50 Total: 22.15 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -5.49 Total: -127.95 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.97 Total: -37.66 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.27 1.63 -72.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274916949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.509 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds