Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00438 * 2 1 4 4 H 1.48496 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46978 * 300.00498 * 3 2 1 6 6 H 1.48498 * 109.46830 * 60.00275 * 3 2 1 7 7 C 1.38816 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00011 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.38236 * 119.99853 * 90.00140 * 11 10 9 13 13 C 1.38234 * 119.99928 * 180.02562 * 12 11 10 14 14 C 1.38237 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00011 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47317 * 90.00420 * 15 14 13 17 17 C 1.34777 * 120.00266 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00135 * 0.27234 * 17 16 15 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46573 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.46953 * 179.97438 * 20 19 17 22 22 N 1.31790 * 119.12210 * 269.73342 * 21 20 19 23 23 C 1.32340 * 120.81719 * 179.76044 * 22 21 20 24 24 C 1.38596 * 119.10372 * 0.49970 * 23 22 21 25 25 C 1.38595 * 118.39942 * 359.75417 * 24 23 22 26 26 N 1.31790 * 119.12167 * 90.00040 * 21 20 19 27 27 C 1.38236 * 119.99837 * 0.25431 * 14 13 12 28 28 C 1.38231 * 120.00206 * 359.49134 * 27 14 13 29 29 H 0.97001 * 119.99943 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99827 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47211 * 60.00459 * 10 9 7 32 32 H 1.09000 * 109.47296 * 300.00189 * 10 9 7 33 33 H 1.07998 * 120.00494 * 0.02562 * 12 11 10 34 34 H 1.08002 * 120.00380 * 179.97438 * 13 12 11 35 35 H 1.09004 * 109.47103 * 330.00201 * 15 14 13 36 36 H 1.09000 * 109.47247 * 210.00079 * 15 14 13 37 37 H 0.96999 * 119.99691 * 359.97438 * 16 15 14 38 38 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 39 39 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 40 40 H 1.09000 * 109.47486 * 299.99934 * 20 19 17 41 41 H 1.09001 * 109.47362 * 60.00657 * 20 19 17 42 42 H 1.08002 * 120.44360 * 180.23213 * 23 22 21 43 43 H 1.08001 * 120.80270 * 179.77235 * 24 23 22 44 44 H 1.07996 * 120.44848 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.99439 * 179.72645 * 27 14 13 46 46 H 1.07997 * 120.00204 * 180.23445 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0785 -4.8022 -0.0012 12 6 0.6298 -5.3273 -1.1986 13 6 -0.2689 -6.3776 -1.1992 14 6 -0.7194 -6.9024 -0.0024 15 6 -1.6997 -8.0471 -0.0030 16 7 -0.9683 -9.3164 -0.0023 17 6 -1.6431 -10.4830 -0.0032 18 8 -2.8558 -10.4821 -0.0096 19 6 -0.8906 -11.7888 -0.0030 20 6 -1.8859 -12.9508 -0.0035 21 6 -1.1334 -14.2566 -0.0040 22 7 -0.8178 -14.8146 -1.1555 23 6 -0.1534 -15.9584 -1.1950 24 6 0.2009 -16.5738 -0.0048 25 6 -0.1532 -15.9591 1.1859 26 7 -0.8133 -14.8128 1.1471 27 6 -0.2752 -6.3736 1.1950 28 6 0.6276 -5.3268 1.1957 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.6845 -3.7146 0.8895 32 1 2.6846 -3.7146 -0.8905 33 1 0.9814 -4.9170 -2.1337 34 1 -0.6198 -6.7876 -2.1348 35 1 -2.3256 -7.9889 -0.8935 36 1 -2.3270 -7.9887 0.8865 37 1 0.0017 -9.3172 -0.0019 38 1 -0.2633 -11.8467 -0.8925 39 1 -0.2647 -11.8472 0.8875 40 1 -2.5129 -12.8927 0.8862 41 1 -2.5120 -12.8925 -0.8938 42 1 0.1055 -16.4084 -2.1421 43 1 0.7401 -17.5096 -0.0050 44 1 0.1064 -16.4094 2.1326 45 1 -0.6306 -6.7808 2.1301 46 1 0.9776 -4.9161 2.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319005829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = 40.315218 kcal Electronic energy + Delta-G solvation = -26450.241194 eV Core-core repulsion = 22532.795711 eV Total energy + Delta-G solvation = -3917.445483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53288 -40.05187 -39.09243 -35.63464 -34.66621 -34.32102 -34.20027 -32.18713 -31.36406 -30.72462 -30.12163 -27.43268 -25.84407 -25.05092 -24.23264 -22.70146 -22.49525 -22.23973 -20.64096 -20.38188 -18.05066 -17.87140 -17.31704 -17.13538 -16.33159 -16.03145 -15.76953 -15.50525 -15.24653 -15.18366 -14.76194 -14.55795 -14.14873 -14.03055 -13.74143 -13.41426 -13.25605 -13.21958 -13.17275 -12.68086 -12.55864 -12.30637 -12.05379 -11.84365 -11.54266 -11.36012 -11.31780 -11.09230 -10.88253 -10.74646 -10.59765 -10.24012 -10.04612 -9.97305 -9.79259 -9.73256 -9.26793 -8.92558 -8.69640 -8.44346 -6.96095 -5.78299 -3.08295 0.35229 0.57491 1.39249 1.63441 2.42708 2.94814 3.26873 3.42231 3.47351 3.49402 3.50225 3.66098 4.00697 4.07954 4.38356 4.51534 4.56381 4.60127 4.63580 4.70673 4.74047 4.95928 4.98066 5.16877 5.18432 5.18947 5.33305 5.36878 5.55302 5.56965 5.61619 5.63248 5.73757 5.85037 5.90781 6.13717 6.16110 6.18043 6.21385 6.47495 6.48788 6.56741 6.62467 6.69292 7.09029 7.20874 7.28892 7.60065 7.67680 7.99565 8.39325 9.51058 10.06967 10.42675 11.44213 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031049 B = 0.001407 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.585669 B =19889.115287 C =20203.477880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.184 3.816 11 C -0.064 4.064 12 C -0.106 4.106 13 C -0.104 4.104 14 C -0.125 4.125 15 C 0.165 3.835 16 N -0.724 5.724 17 C 0.516 3.484 18 O -0.540 6.540 19 C -0.131 4.131 20 C -0.037 4.037 21 C 0.322 3.678 22 N -0.515 5.515 23 C 0.150 3.850 24 C -0.236 4.236 25 C 0.150 3.850 26 N -0.516 5.516 27 C -0.104 4.104 28 C -0.106 4.106 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.403 0.597 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.169 0.831 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.119 0.881 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -34.986 0.006 34.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.065 4.065 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.126 4.126 15 C 0.043 3.957 16 N -0.376 5.376 17 C 0.302 3.698 18 O -0.418 6.418 19 C -0.172 4.172 20 C -0.076 4.076 21 C 0.055 3.945 22 N -0.229 5.229 23 C -0.016 4.016 24 C -0.257 4.257 25 C -0.016 4.016 26 N -0.229 5.229 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.186 0.814 43 H 0.166 0.834 44 H 0.186 0.814 45 H 0.137 0.863 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.492 -33.994 0.002 33.997 hybrid contribution 1.207 0.080 0.002 1.209 sum 0.715 -33.914 0.005 33.921 Atomic orbital electron populations 1.69683 1.05144 1.25619 1.57447 1.24763 0.95528 0.97719 1.02820 0.86102 0.78770 0.84000 0.77218 1.20503 1.21819 1.21815 1.19289 0.91097 0.83951 1.43063 0.91002 1.42344 1.05957 0.99292 1.89522 1.19709 0.91881 0.83962 0.98737 1.20395 0.97202 0.96076 0.92805 1.21125 0.97285 0.95873 0.98219 1.20995 0.97383 0.96746 0.97098 1.19683 1.00365 0.98682 0.93825 1.20169 0.92633 0.79928 1.02999 1.46142 1.10625 1.05425 1.75386 1.20476 0.88143 0.85278 0.75915 1.90725 1.13900 1.87688 1.49446 1.21543 0.99136 0.91542 1.05023 1.20136 0.96032 0.85426 1.06041 1.23250 0.91885 0.95955 0.83441 1.68316 1.12923 1.11157 1.30541 1.23305 0.89610 0.89767 0.98949 1.22949 1.04250 1.03521 0.95022 1.23304 0.89638 0.89746 0.98942 1.68316 1.12911 1.11149 1.30564 1.20995 0.97364 0.96763 0.97092 1.21125 0.97234 0.95917 0.98228 0.93489 0.78045 0.95393 0.95400 0.85811 0.86308 0.90669 0.90675 0.76308 0.88444 0.88457 0.88182 0.88176 0.81364 0.83398 0.81366 0.86307 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.56 5.59 -61.08 -0.34 -18.90 16 10 C 0.18 3.71 6.38 -5.19 -0.03 3.68 16 11 C -0.06 -1.09 5.25 -104.62 -0.55 -1.64 16 12 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 13 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 14 C -0.12 -1.52 5.25 -104.62 -0.55 -2.07 16 15 C 0.17 1.80 5.80 -5.20 -0.03 1.77 16 16 N -0.72 -6.65 5.55 -61.47 -0.34 -6.99 16 17 C 0.52 5.23 7.83 -10.98 -0.09 5.15 16 18 O -0.54 -7.50 15.98 5.56 0.09 -7.41 16 19 C -0.13 -0.98 5.68 -27.88 -0.16 -1.14 16 20 C -0.04 -0.32 4.94 -27.88 -0.14 -0.45 16 21 C 0.32 2.85 6.90 -157.20 -1.08 1.77 16 22 N -0.52 -4.41 10.33 -10.72 -0.11 -4.52 16 23 C 0.15 0.84 11.31 -17.20 -0.19 0.64 16 24 C -0.24 -0.98 10.17 -39.32 -0.40 -1.38 16 25 C 0.15 0.84 11.31 -17.20 -0.19 0.64 16 26 N -0.52 -4.41 10.33 -10.72 -0.11 -4.52 16 27 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 28 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.39 10.53 7.66 -40.82 -0.31 10.22 16 31 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.40 2.95 8.46 -40.82 -0.35 2.60 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 44 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 45 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -35.16 400.33 -10.81 -45.97 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.53 Total: 8.54 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -5.20 Total: -7.92 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.18 Total: -62.55 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.16 -10.81 -45.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319005829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.288 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds