Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00410 * 2 1 4 4 H 1.48508 * 109.46800 * 269.99891 * 3 2 1 5 5 H 1.48498 * 109.47178 * 29.99702 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99750 * 3 2 1 7 7 C 1.37884 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99759 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46832 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00122 * 96.54348 * 10 9 7 12 12 C 1.50701 * 109.47073 * 269.99965 * 11 10 9 13 13 C 1.38227 * 119.62113 * 94.97674 * 12 11 10 14 14 C 1.38629 * 119.15983 * 179.78735 * 13 12 11 15 15 C 1.38665 * 118.42057 * 0.47683 * 14 13 12 16 16 C 1.38179 * 119.16768 * 359.50251 * 15 14 13 17 17 N 1.31862 * 119.61621 * 274.99604 * 12 11 10 18 18 C 1.34780 * 119.99947 * 276.53801 * 10 9 7 19 19 O 1.21574 * 120.00064 * 175.67642 * 18 10 9 20 20 C 1.47715 * 119.99984 * 355.68309 * 18 10 9 21 21 C 1.41645 * 126.49544 * 185.84173 * 20 18 10 22 22 C 1.34698 * 105.33170 * 179.84015 * 21 20 18 23 23 N 1.35500 * 107.71503 * 0.45419 * 22 21 20 24 24 N 1.28427 * 109.71864 * 359.65977 * 23 22 21 25 25 C 1.46999 * 123.90506 * 179.61368 * 23 22 21 26 26 C 1.53140 * 108.88278 * 342.33595 * 25 23 22 27 27 C 1.53161 * 109.59498 * 51.13716 * 26 25 23 28 28 C 1.50800 * 127.53841 * 180.18245 * 22 21 20 29 29 H 0.96999 * 119.99408 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47094 * 60.00045 * 9 7 2 31 31 H 1.08995 * 109.46837 * 299.99672 * 9 7 2 32 32 H 1.09008 * 109.47567 * 150.00056 * 11 10 9 33 33 H 1.09002 * 109.47192 * 29.99693 * 11 10 9 34 34 H 1.08001 * 120.41831 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.78244 * 180.23013 * 14 13 12 36 36 H 1.08001 * 120.41883 * 179.77408 * 15 14 13 37 37 H 1.07996 * 119.61898 * 180.25469 * 16 15 14 38 38 H 1.07998 * 127.33164 * 359.97438 * 21 20 18 39 39 H 1.08995 * 109.56749 * 102.15844 * 25 23 22 40 40 H 1.09001 * 109.56755 * 222.39498 * 25 23 22 41 41 H 1.08992 * 109.45031 * 171.17699 * 26 25 23 42 42 H 1.08999 * 109.45086 * 291.10235 * 26 25 23 43 43 H 1.08997 * 109.53735 * 50.27568 * 27 26 25 44 44 H 1.09004 * 109.53543 * 170.52714 * 27 26 25 45 45 H 1.09000 * 109.72050 * 45.14375 * 28 22 21 46 46 H 1.09011 * 109.71297 * 284.50756 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.5690 -4.2634 1.2609 12 6 3.7675 -3.5693 1.8550 13 6 3.5836 -2.5771 2.7996 14 6 4.6929 -1.9479 3.3431 15 6 5.9510 -2.3351 2.9069 16 6 6.0569 -3.3353 1.9594 17 7 4.9794 -3.9153 1.4674 18 6 2.7418 -4.0386 -1.1591 19 8 3.5902 -4.9093 -1.1516 20 6 2.3018 -3.4472 -2.4392 21 6 2.6859 -3.8658 -3.7367 22 6 2.0376 -3.0424 -4.5830 23 7 1.3138 -2.1721 -3.8381 24 7 1.4813 -2.4261 -2.5904 25 6 0.4740 -1.1077 -4.4061 26 6 0.8916 -0.8697 -5.8601 27 6 0.9178 -2.2037 -6.6120 28 6 2.0865 -3.0499 -6.0902 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8112 -5.3095 1.0729 33 1 1.7324 -4.2036 1.9571 34 1 2.5884 -2.2981 3.1131 35 1 4.5798 -1.1719 4.0856 36 1 6.8371 -1.8640 3.3059 37 1 7.0332 -3.6455 1.6175 38 1 3.3543 -4.6744 -3.9930 39 1 -0.5724 -1.4109 -4.3717 40 1 0.6077 -0.1913 -3.8313 41 1 0.1781 -0.1980 -6.3373 42 1 1.8844 -0.4202 -5.8837 43 1 -0.0196 -2.7344 -6.4455 44 1 1.0490 -2.0187 -7.6782 45 1 1.9924 -4.0723 -6.4561 46 1 3.0302 -2.6227 -6.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362099966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 70.674036 kcal Electronic energy + Delta-G solvation = -30319.714277 eV Core-core repulsion = 26403.585251 eV Total energy + Delta-G solvation = -3916.129026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.58882 -41.20144 -40.07668 -37.39613 -36.77069 -34.58233 -33.88091 -33.33002 -32.78675 -31.11709 -29.50346 -29.31111 -27.74479 -25.41621 -24.90929 -24.31466 -23.82856 -22.99352 -22.51510 -20.61483 -19.53947 -18.60504 -17.85790 -17.62983 -17.53907 -17.11138 -16.93998 -16.79534 -16.47243 -16.22412 -15.50663 -15.28243 -14.99874 -14.80687 -14.75300 -14.53896 -14.33463 -14.16897 -14.04801 -13.88769 -13.57166 -13.46322 -13.09593 -12.82224 -12.78875 -12.63331 -12.55005 -12.12997 -11.99996 -11.86212 -11.80946 -11.66687 -11.09159 -10.95143 -10.71025 -10.43718 -10.30915 -9.92204 -9.86152 -9.71307 -9.37274 -8.07048 -6.11449 0.21568 0.47456 0.85148 1.28663 1.30852 1.34096 1.42799 1.70654 2.31223 2.46752 2.61957 3.06659 3.24399 3.45781 3.47017 3.66458 3.79354 3.83134 3.90183 3.98797 4.04552 4.21778 4.30816 4.33396 4.38270 4.49921 4.52558 4.61267 4.64035 4.77641 4.80636 4.84384 4.88052 4.91642 4.97652 5.00999 5.11456 5.19529 5.27618 5.32779 5.33304 5.37489 5.55473 5.82508 5.87316 5.92794 6.14772 6.26048 6.56202 6.89265 7.18821 7.20967 7.43482 7.53658 9.00089 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.004720 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.595533 B = 5930.341801 C = 7468.266482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.037 3.963 3 Si 0.929 3.071 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.488 4.488 8 H 0.020 0.980 9 C 0.248 3.752 10 N -0.585 5.585 11 C 0.167 3.833 12 C 0.102 3.898 13 C -0.149 4.149 14 C -0.087 4.087 15 C -0.170 4.170 16 C 0.072 3.928 17 N -0.497 5.497 18 C 0.593 3.407 19 O -0.571 6.571 20 C -0.053 4.053 21 C -0.208 4.208 22 C 0.011 3.989 23 N -0.291 5.291 24 N -0.224 5.224 25 C 0.113 3.887 26 C -0.126 4.126 27 C -0.118 4.118 28 C -0.047 4.047 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -1.223 -7.978 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.527 4.527 8 H 0.038 0.962 9 C 0.128 3.872 10 N -0.315 5.315 11 C 0.043 3.957 12 C -0.036 4.036 13 C -0.170 4.170 14 C -0.113 4.113 15 C -0.190 4.190 16 C -0.085 4.085 17 N -0.207 5.207 18 C 0.381 3.619 19 O -0.451 6.451 20 C -0.212 4.212 21 C -0.236 4.236 22 C -0.112 4.112 23 N -0.081 5.081 24 N -0.059 5.059 25 C -0.005 4.005 26 C -0.164 4.164 27 C -0.155 4.155 28 C -0.086 4.086 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.837 -1.334 -8.011 8.326 hybrid contribution 0.816 1.223 0.771 1.660 sum 2.653 -0.111 -7.239 7.711 Atomic orbital electron populations 1.69994 1.06306 1.26933 1.51945 1.25182 0.95228 1.00309 0.95473 0.86027 0.78892 0.81652 0.77804 1.21061 1.20057 1.20792 1.21056 0.91066 0.91470 1.49122 0.96164 1.19499 0.87457 0.82219 0.98036 1.48075 1.44079 1.34551 1.04790 1.20313 0.93734 0.96184 0.85443 1.21588 0.93078 0.95404 0.93575 1.22095 1.01039 0.96222 0.97632 1.21918 0.92217 0.98291 0.98825 1.22446 0.99314 0.98464 0.98737 1.23190 0.97465 0.93787 0.94071 1.67519 0.99373 1.29065 1.24745 1.17282 0.80547 0.81160 0.82907 1.90671 1.33020 1.33917 1.87444 1.22012 1.04515 0.99490 0.95232 1.21395 1.06997 1.05164 0.90039 1.21894 0.98143 0.93688 0.97465 1.46464 1.33992 1.24817 1.02822 1.74304 1.16896 1.14877 0.99824 1.22362 0.94157 0.87903 0.96125 1.21970 1.03970 0.99978 0.90505 1.21696 0.98069 0.94152 1.01620 1.20530 1.01065 1.03419 0.83562 0.92936 0.92453 0.96341 0.89902 0.87396 0.84625 0.82373 0.81554 0.81217 0.82137 0.88389 0.90372 0.85966 0.91110 0.91082 0.86996 0.87572 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.35 13.29 21.45 0.28 -50.07 16 2 C 0.04 2.03 5.46 84.66 0.46 2.49 16 3 Si 0.93 43.87 29.54 68.60 2.03 45.89 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.49 -26.90 8.45 25.60 0.22 -26.68 16 8 H 0.02 1.22 7.81 -2.91 -0.02 1.19 16 9 C 0.25 12.88 4.81 85.63 0.41 13.30 16 10 N -0.59 -28.32 2.46 -834.06 -2.05 -30.37 16 11 C 0.17 7.01 5.72 85.63 0.49 7.50 16 12 C 0.10 4.24 6.36 42.55 0.27 4.51 16 13 C -0.15 -5.56 9.72 22.36 0.22 -5.34 16 14 C -0.09 -2.69 10.18 22.47 0.23 -2.46 16 15 C -0.17 -4.90 10.11 22.36 0.23 -4.67 16 16 C 0.07 2.46 11.18 84.67 0.95 3.41 16 17 N -0.50 -21.13 10.27 -183.88 -1.89 -23.02 16 18 C 0.59 30.05 7.61 86.75 0.66 30.71 16 19 O -0.57 -30.24 16.55 -3.95 -0.07 -30.31 16 20 C -0.05 -2.54 6.81 42.49 0.29 -2.25 16 21 C -0.21 -8.17 10.76 22.30 0.24 -7.93 16 22 C 0.01 0.37 6.57 41.21 0.27 0.64 16 23 N -0.29 -10.86 3.74 -333.35 -1.25 -12.11 16 24 N -0.22 -10.54 7.88 -48.06 -0.38 -10.91 16 25 C 0.11 3.23 7.17 86.33 0.62 3.85 16 26 C -0.13 -2.22 5.91 30.69 0.18 -2.04 16 27 C -0.12 -1.70 5.98 30.79 0.18 -1.52 16 28 C -0.05 -0.92 6.28 30.03 0.19 -0.73 16 29 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.06 3.19 5.34 -2.38 -0.01 3.18 16 31 H 0.02 0.98 7.82 -2.39 -0.02 0.96 16 32 H 0.08 3.49 7.49 -2.38 -0.02 3.48 16 33 H 0.11 3.92 7.75 -2.39 -0.02 3.90 16 34 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.16 5.77 8.06 -2.91 -0.02 5.75 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 43 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -77.96 384.02 3.77 -74.19 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.99 Total: 23.91 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.10 Total: 12.79 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.28 Total: -126.47 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.07 Total: -30.31 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -77.96 3.77 -74.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362099966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.862 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds