Wall clock time and date at job start Sat Apr 11 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46971 * 269.99857 * 3 2 1 5 5 H 1.48499 * 109.47108 * 30.00214 * 3 2 1 6 6 H 1.48502 * 109.46875 * 150.00104 * 3 2 1 7 7 C 1.38819 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00520 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99976 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00063 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47111 * 180.02562 * 10 9 7 12 12 H 1.08996 * 112.85140 * 43.80189 * 11 10 9 13 13 C 1.53781 * 113.61480 * 175.00222 * 11 10 9 14 14 C 1.53786 * 87.17350 * 139.93948 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.34779 * 119.99390 * 154.99856 * 16 14 13 18 18 O 1.21571 * 120.00309 * 0.02562 * 17 16 14 19 19 C 1.47670 * 119.99391 * 180.02562 * 17 16 14 20 20 C 1.39707 * 120.07862 * 359.72856 * 19 17 16 21 21 C 1.37726 * 119.91869 * 179.72057 * 20 19 17 22 22 C 1.39062 * 120.07746 * 0.57883 * 21 20 19 23 23 N 1.39828 * 119.91649 * 179.70113 * 22 21 20 24 24 C 1.35834 * 126.10720 * 359.97173 * 23 22 21 25 25 C 1.35287 * 107.61616 * 179.97438 * 24 23 22 26 26 C 1.39951 * 107.96832 * 359.97438 * 25 24 23 27 27 N 1.30828 * 108.36820 * 359.74862 * 26 25 24 28 28 C 1.39051 * 120.15665 * 359.67260 * 22 21 20 29 29 C 1.37729 * 120.07575 * 0.04646 * 28 22 21 30 30 C 1.53782 * 113.61259 * 272.50057 * 11 10 9 31 31 H 0.97000 * 119.99394 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99483 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47006 * 60.00531 * 10 9 7 34 34 H 1.09002 * 109.47617 * 299.99986 * 10 9 7 35 35 H 1.09002 * 113.61445 * 254.52948 * 13 11 10 36 36 H 1.09002 * 113.61408 * 25.34678 * 13 11 10 37 37 H 0.97001 * 120.00117 * 335.00621 * 16 14 13 38 38 H 1.08001 * 120.04067 * 359.97438 * 20 19 17 39 39 H 1.08003 * 119.96103 * 180.27272 * 21 20 19 40 40 H 1.07998 * 126.19670 * 359.97438 * 24 23 22 41 41 H 1.08003 * 126.01589 * 179.97438 * 25 24 23 42 42 H 1.07998 * 125.81748 * 180.02562 * 26 25 24 43 43 H 1.07993 * 119.96230 * 180.02562 * 28 22 21 44 44 H 1.08001 * 120.03145 * 180.02562 * 29 28 22 45 45 H 1.08997 * 113.61668 * 334.56352 * 30 11 10 46 46 H 1.08998 * 113.61674 * 105.38861 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.9000 -1.4015 0.6942 13 6 6.4784 -3.4590 0.1217 14 6 7.4249 -2.8232 -0.9102 15 1 7.8112 -3.5316 -1.6430 16 7 8.4732 -1.9931 -0.3117 17 6 9.6307 -1.7900 -0.9717 18 8 9.8046 -2.2951 -2.0637 19 6 10.6876 -0.9537 -0.3681 20 6 10.4872 -0.3678 0.8842 21 6 11.4775 0.4068 1.4466 22 6 12.6709 0.6158 0.7640 23 7 13.6715 1.4080 1.3354 24 6 13.6094 2.0293 2.5417 25 6 14.7760 2.6901 2.7225 26 6 15.5769 2.4680 1.5965 27 7 14.9198 1.6968 0.7688 28 6 12.8717 0.0385 -0.4849 29 6 11.8880 -0.7420 -1.0507 30 6 6.2107 -2.0186 -1.4088 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3623 -0.0007 33 1 3.8484 -3.0427 -0.8908 34 1 3.8490 -3.0425 0.8891 35 1 6.9284 -3.5874 1.1061 36 1 5.9827 -4.3608 -0.2379 37 1 8.3343 -1.5899 0.5595 38 1 9.5585 -0.5255 1.4125 39 1 11.3250 0.8564 2.4166 40 1 12.7791 2.0010 3.2317 41 1 15.0424 3.2843 3.5841 42 1 16.5701 2.8622 1.4397 43 1 13.7998 0.2026 -1.0120 44 1 12.0449 -1.1904 -2.0207 45 1 5.6424 -2.5262 -2.1881 46 1 6.4433 -0.9839 -1.6605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571126521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:57 Heat of formation + Delta-G solvation = 114.512724 kcal Electronic energy + Delta-G solvation = -27430.210585 eV Core-core repulsion = 23515.982547 eV Total energy + Delta-G solvation = -3914.228038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01260 -40.67322 -39.35456 -38.10742 -34.78471 -34.14031 -33.27880 -31.80210 -31.16779 -30.63046 -29.68475 -27.25668 -25.64015 -24.89812 -23.69699 -23.14573 -21.98627 -21.42043 -21.04708 -20.69745 -19.35224 -18.90231 -18.01801 -17.53085 -16.38041 -15.80006 -15.77998 -15.53083 -15.20162 -15.09908 -14.79588 -14.42350 -14.33019 -14.23994 -14.12960 -13.76015 -13.51380 -13.26434 -13.10584 -12.99157 -12.66538 -12.49524 -12.34925 -11.85795 -11.76732 -11.45217 -11.24187 -10.91612 -10.83674 -10.69081 -10.30560 -10.21292 -10.19775 -9.91746 -9.70630 -9.64774 -9.59235 -9.18539 -8.88896 -8.59093 -7.22617 -5.77536 -3.12515 -0.00975 0.75334 1.43936 1.80886 2.24727 2.56502 2.85414 3.34901 3.38411 3.39368 3.43613 3.86836 4.11399 4.27548 4.34355 4.35209 4.55713 4.57857 4.63110 4.64860 4.75373 4.92566 4.96430 4.96936 5.06472 5.12959 5.36072 5.39216 5.51121 5.52954 5.60419 5.65021 5.67223 5.77464 5.80886 5.82180 5.92729 6.02465 6.06984 6.07537 6.12050 6.21969 6.50076 6.58446 6.66556 6.79647 7.05705 7.26198 7.95937 7.99393 8.41848 9.21307 9.93791 10.13863 11.41025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.002067 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.570606 B =13544.652553 C =15069.803667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.167 3.833 11 C -0.119 4.119 12 H 0.085 0.915 13 C -0.136 4.136 14 C 0.115 3.885 15 H 0.103 0.897 16 N -0.704 5.704 17 C 0.562 3.438 18 O -0.534 6.534 19 C -0.144 4.144 20 C -0.056 4.056 21 C -0.149 4.149 22 C 0.185 3.815 23 N -0.329 5.329 24 C 0.053 3.947 25 C -0.258 4.258 26 C 0.058 3.942 27 N -0.287 5.287 28 C -0.129 4.129 29 C -0.033 4.033 30 C -0.141 4.141 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.400 0.600 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.181 0.819 41 H 0.156 0.844 42 H 0.191 0.809 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.094 0.906 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.367 0.999 6.072 32.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.138 4.138 12 H 0.104 0.896 13 C -0.174 4.174 14 C 0.010 3.990 15 H 0.121 0.879 16 N -0.355 5.355 17 C 0.349 3.651 18 O -0.412 6.412 19 C -0.147 4.147 20 C -0.075 4.075 21 C -0.170 4.170 22 C 0.092 3.908 23 N -0.105 5.105 24 C -0.088 4.088 25 C -0.286 4.286 26 C -0.130 4.130 27 N -0.105 5.105 28 C -0.149 4.149 29 C -0.052 4.052 30 C -0.180 4.180 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.198 0.802 41 H 0.174 0.826 42 H 0.208 0.792 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.113 0.887 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 32.214 -0.093 4.150 32.480 hybrid contribution 0.376 2.075 1.418 2.542 sum 32.590 1.982 5.569 33.122 Atomic orbital electron populations 1.69705 1.05091 1.25777 1.57698 1.24685 0.95254 0.97212 1.02161 0.86524 0.79074 0.84984 0.77766 1.21102 1.21774 1.20482 1.19082 0.80749 0.94715 1.42813 0.89253 1.42695 1.03972 1.02278 1.91132 1.20618 0.87629 0.89239 0.98565 1.22823 0.96542 0.97326 0.97133 0.89625 1.23302 0.96560 0.98628 0.98936 1.22011 0.86738 0.93469 0.96755 0.87894 1.45601 1.15604 1.51919 1.22399 1.18106 0.81718 0.80372 0.84910 1.90790 1.80144 1.50069 1.20197 1.20036 0.96141 1.02315 0.96250 1.21132 0.98398 0.94187 0.93831 1.20711 0.92186 1.02789 1.01315 1.17745 0.86706 0.92632 0.93735 1.46032 1.12200 1.37902 1.14332 1.22851 1.00803 0.96375 0.88742 1.21678 0.94996 1.09421 1.02473 1.24154 1.00460 0.96136 0.92238 1.77464 0.91202 1.19695 1.22186 1.20872 1.01111 0.98899 0.94026 1.21197 0.90526 0.93906 0.99577 1.23492 0.95815 1.00954 0.97715 0.93088 0.80759 0.95278 0.95562 0.91127 0.88357 0.76444 0.84390 0.84483 0.80220 0.82594 0.79176 0.83758 0.83506 0.88708 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.11 27.74 -169.99 -4.71 17.39 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 7 C -0.24 -6.91 10.47 -15.05 -0.16 -7.07 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.72 5.41 -59.91 -0.32 -18.05 16 10 C 0.17 3.07 6.10 -4.04 -0.02 3.05 16 11 C -0.12 -1.64 3.64 -89.80 -0.33 -1.97 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.14 -1.44 7.38 -25.92 -0.19 -1.63 16 14 C 0.12 1.31 4.33 -67.02 -0.29 1.02 16 15 H 0.10 1.26 7.47 -51.93 -0.39 0.87 16 16 N -0.70 -7.16 5.22 -53.92 -0.28 -7.44 16 17 C 0.56 6.61 7.77 -12.41 -0.10 6.52 16 18 O -0.53 -8.16 15.94 5.30 0.08 -8.07 16 19 C -0.14 -1.37 5.88 -104.95 -0.62 -1.99 16 20 C -0.06 -0.41 9.53 -39.22 -0.37 -0.78 16 21 C -0.15 -1.03 9.44 -39.46 -0.37 -1.40 16 22 C 0.19 1.62 6.69 -83.60 -0.56 1.06 16 23 N -0.33 -2.92 3.81 -10.55 -0.04 -2.96 16 24 C 0.05 0.34 10.81 -16.83 -0.18 0.16 16 25 C -0.26 -1.49 10.80 -39.99 -0.43 -1.93 16 26 C 0.06 0.39 12.02 -17.34 -0.21 0.18 16 27 N -0.29 -2.75 11.85 30.64 0.36 -2.39 16 28 C -0.13 -1.17 9.64 -39.47 -0.38 -1.55 16 29 C -0.03 -0.31 9.58 -39.22 -0.38 -0.68 16 30 C -0.14 -1.89 7.44 -25.82 -0.19 -2.08 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 33 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.40 3.11 6.73 -40.82 -0.27 2.84 16 38 H 0.14 0.68 6.39 -52.49 -0.34 0.34 16 39 H 0.14 0.58 6.73 -52.48 -0.35 0.23 16 40 H 0.18 0.56 7.04 -52.49 -0.37 0.19 16 41 H 0.16 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.19 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.14 1.26 7.68 -52.49 -0.40 0.86 16 44 H 0.15 1.35 7.64 -52.49 -0.40 0.95 16 45 H 0.09 1.30 7.90 -51.93 -0.41 0.89 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -36.42 385.77 -9.32 -45.74 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.12 Total: 7.74 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -4.88 Total: -9.11 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.49 Total: -59.50 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.42 -9.32 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571126521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.252 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds