Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38082 * 126.31919 * 2 1 4 4 C 1.47338 * 126.41711 * 359.97438 * 3 2 1 5 5 O 1.21628 * 120.00454 * 259.02966 * 4 3 2 6 6 N 1.34782 * 119.99817 * 79.03285 * 4 3 2 7 7 C 1.36978 * 119.99630 * 184.47656 * 6 4 3 8 8 H 1.08000 * 119.99885 * 247.22791 * 7 6 4 9 9 C 1.38973 * 120.00252 * 67.23272 * 7 6 4 10 10 N 1.31407 * 120.00009 * 74.20859 * 9 7 6 11 11 Si 1.86798 * 120.00254 * 254.20897 * 9 7 6 12 12 H 1.48504 * 109.46832 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47157 * 119.99439 * 11 9 7 14 14 H 1.48496 * 109.47349 * 239.99958 * 11 9 7 15 15 C 1.46490 * 120.00321 * 4.47717 * 6 4 3 16 16 C 1.54262 * 110.03451 * 242.93562 * 15 6 4 17 17 C 1.54964 * 104.16337 * 217.13395 * 16 15 6 18 18 C 1.54891 * 102.77644 * 37.88335 * 17 16 15 19 19 C 1.53875 * 110.03630 * 125.71123 * 15 6 4 20 20 C 1.41406 * 107.16820 * 180.25655 * 3 2 1 21 21 N 1.30442 * 108.08075 * 359.74965 * 20 3 2 22 22 N 1.34627 * 126.31902 * 179.81622 * 2 1 3 23 23 C 1.39914 * 125.77315 * 0.02562 * 22 2 1 24 24 C 1.39334 * 120.85197 * 324.68842 * 23 22 2 25 25 C 1.38001 * 119.07521 * 180.02562 * 24 23 22 26 26 N 1.31940 * 120.83578 * 0.02562 * 25 24 23 27 27 C 1.31936 * 121.88365 * 359.97438 * 26 25 24 28 28 C 1.37997 * 120.83505 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46965 * 270.20912 * 1 2 3 30 30 H 1.08996 * 109.46619 * 30.20842 * 1 2 3 31 31 H 1.08996 * 109.46677 * 150.20178 * 1 2 3 32 32 H 0.96999 * 120.00337 * 184.83591 * 10 9 7 33 33 H 1.09011 * 110.01764 * 4.32120 * 15 6 4 34 34 H 1.09006 * 110.48658 * 335.78029 * 16 15 6 35 35 H 1.08999 * 110.49219 * 98.42006 * 16 15 6 36 36 H 1.08996 * 110.72067 * 279.57228 * 17 16 15 37 37 H 1.09000 * 110.92857 * 156.28972 * 17 16 15 38 38 H 1.08997 * 110.48927 * 203.40634 * 18 17 16 39 39 H 1.09008 * 110.59932 * 80.81743 * 18 17 16 40 40 H 1.08993 * 110.03555 * 238.57004 * 19 15 6 41 41 H 1.08997 * 110.03027 * 0.02562 * 19 15 6 42 42 H 1.08001 * 125.96157 * 179.75967 * 20 3 2 43 43 H 1.07994 * 120.46245 * 0.04765 * 24 23 22 44 44 H 1.07997 * 119.58239 * 180.27896 * 25 24 23 45 45 H 1.08001 * 119.58169 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.46047 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.1126 0.0000 4 6 1.8876 2.5196 -0.0005 5 8 1.8989 3.1596 -1.0347 6 7 1.4752 3.0975 1.1451 7 6 0.9825 4.3755 1.1287 8 1 1.5303 5.1716 1.6108 9 6 -0.2224 4.6476 0.4918 10 7 -1.3561 4.2824 1.0468 11 14 -0.2303 5.5327 -1.1531 12 1 1.1658 5.8342 -1.5597 13 1 -0.8689 4.6677 -2.1776 14 1 -0.9941 6.8002 -1.0297 15 6 1.5538 2.3589 2.4078 16 6 0.1393 2.1499 2.9867 17 6 0.3304 2.2974 4.5174 18 6 1.3750 3.4360 4.6240 19 6 2.3395 3.1759 3.4484 20 6 3.6607 0.6487 -0.0060 21 7 3.6363 -0.6555 -0.0040 22 7 2.3044 -1.0847 0.0035 23 6 1.8742 -2.4161 0.0072 24 6 0.7254 -2.7938 0.6994 25 6 0.3348 -4.1172 0.6788 26 7 1.0341 -5.0186 0.0159 27 6 2.1269 -4.7002 -0.6512 28 6 2.5840 -3.3984 -0.6801 29 1 -0.3633 0.0038 1.0276 30 1 -0.3632 0.8881 -0.5171 31 1 -0.3632 -0.8918 -0.5107 32 1 -2.1920 4.4089 0.5711 33 1 2.0375 1.3953 2.2470 34 1 -0.5429 2.9133 2.6123 35 1 -0.2299 1.1540 2.7418 36 1 0.7194 1.3748 4.9481 37 1 -0.6037 2.5837 5.0006 38 1 1.9069 3.3782 5.5737 39 1 0.8947 4.4085 4.5154 40 1 3.2040 2.6087 3.7932 41 1 2.6620 4.1222 3.0140 42 1 4.5465 1.2664 -0.0113 43 1 0.1485 -2.0611 1.2440 44 1 -0.5568 -4.4183 1.2087 45 1 2.6706 -5.4680 -1.1815 46 1 3.4791 -3.1445 -1.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090602038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 102.413482 kcal Electronic energy + Delta-G solvation = -30548.247385 eV Core-core repulsion = 26633.494685 eV Total energy + Delta-G solvation = -3914.752701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.66666 -40.03586 -38.55338 -36.61533 -34.41674 -33.56102 -32.53144 -31.98996 -31.29189 -29.98500 -27.87549 -27.38271 -26.87600 -24.86037 -24.00724 -23.78814 -21.68339 -20.73260 -19.93431 -19.56832 -19.06033 -17.64909 -16.71668 -16.52523 -16.13767 -15.95136 -15.40018 -14.89273 -14.81843 -14.66465 -14.14993 -14.11230 -13.93535 -13.80358 -13.61852 -13.50510 -12.88295 -12.76721 -12.50462 -12.35642 -12.14918 -11.98941 -11.82983 -11.31313 -10.94191 -10.83367 -10.67064 -10.51432 -10.48271 -10.39339 -10.28137 -10.03815 -9.87482 -9.82094 -9.68739 -9.49810 -9.02778 -8.60859 -8.28829 -8.05317 -7.52006 -6.53455 -3.87746 0.60944 0.81594 2.02431 2.27647 2.79256 3.23895 3.51125 3.53078 3.75712 3.89213 4.17024 4.23207 4.39177 4.53042 4.62960 4.72574 4.78663 4.90341 5.04310 5.10431 5.27990 5.40350 5.43506 5.46070 5.47890 5.55860 5.62964 5.68952 5.93662 5.95672 6.00921 6.07167 6.17478 6.26339 6.28769 6.31304 6.42473 6.47367 6.58891 6.62386 6.68325 6.78324 6.98821 7.08563 7.11728 7.18952 7.66097 7.66878 7.68811 8.47226 8.95124 9.10512 9.43656 10.02387 10.23729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.004112 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.104910 B = 6807.220945 C = 7481.342383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.109 3.891 3 C -0.230 4.230 4 C 0.543 3.457 5 O -0.554 6.554 6 N -0.415 5.415 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.175 3.825 10 N -0.733 5.733 11 Si 0.831 3.169 12 H -0.253 1.253 13 H -0.283 1.283 14 H -0.300 1.300 15 C 0.122 3.878 16 C -0.141 4.141 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.121 4.121 20 C 0.096 3.904 21 N -0.297 5.297 22 N -0.331 5.331 23 C 0.212 3.788 24 C -0.189 4.189 25 C 0.122 3.878 26 N -0.493 5.493 27 C 0.118 3.882 28 C -0.170 4.170 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.271 0.729 33 H 0.054 0.946 34 H 0.128 0.872 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.194 0.806 43 H 0.146 0.854 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -13.414 3.348 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.244 4.244 4 C 0.329 3.671 5 O -0.435 6.435 6 N -0.135 5.135 7 C -0.576 4.576 8 H 0.097 0.903 9 C -0.052 4.052 10 N -0.355 5.355 11 Si 0.653 3.347 12 H -0.177 1.177 13 H -0.209 1.209 14 H -0.228 1.228 15 C 0.019 3.981 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.092 4.092 21 N -0.115 5.115 22 N -0.107 5.107 23 C 0.111 3.889 24 C -0.212 4.212 25 C -0.035 4.035 26 N -0.203 5.203 27 C -0.039 4.039 28 C -0.192 4.192 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.211 0.789 43 H 0.164 0.836 44 H 0.182 0.818 45 H 0.181 0.819 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.685 -15.049 2.969 15.432 hybrid contribution -0.184 1.937 -0.825 2.114 sum 1.502 -13.112 2.144 13.371 Atomic orbital electron populations 1.20681 0.86607 1.04215 1.03962 1.21520 0.94589 0.85505 0.99866 1.20786 0.92697 0.95507 1.15408 1.17725 0.79861 0.83603 0.85884 1.90580 1.56949 1.63814 1.32155 1.43102 1.54512 1.12893 1.03026 1.17601 1.06046 0.83798 1.50188 0.90319 1.25283 0.93187 0.90089 0.96665 1.70821 0.99589 1.31972 1.33156 0.87692 0.79991 0.78740 0.88248 1.17670 1.20863 1.22804 1.21901 0.95023 0.93559 0.87624 1.22982 0.99371 1.01877 0.93636 1.22385 0.98365 0.97476 0.97510 1.22204 0.96791 0.99299 0.96731 1.22286 0.96930 1.01083 0.95675 1.24090 0.97665 0.91129 0.96325 1.77191 0.94526 1.13463 1.26278 1.45381 1.04916 1.02780 1.57648 1.17720 0.94327 0.81607 0.95214 1.22233 0.98257 0.99074 1.01613 1.22671 0.98267 0.87796 0.94814 1.67696 1.06824 1.37626 1.08112 1.22701 0.92143 0.94196 0.94880 1.22063 1.02569 0.93566 1.01007 0.89241 0.88873 0.91032 0.91765 0.92786 0.85449 0.94549 0.93403 0.92539 0.93489 0.91311 0.93718 0.90589 0.78946 0.83628 0.81757 0.81937 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 8.44 36.01 0.30 -1.16 16 2 C 0.11 1.89 6.66 -81.42 -0.54 1.35 16 3 C -0.23 -4.53 3.86 -105.05 -0.41 -4.94 16 4 C 0.54 12.85 6.98 -12.56 -0.09 12.76 16 5 O -0.55 -15.21 14.87 5.25 0.08 -15.14 16 6 N -0.42 -9.62 2.49 -107.78 -0.27 -9.89 16 7 C -0.46 -11.75 6.87 -14.98 -0.10 -11.86 16 8 H 0.08 2.12 7.34 -52.49 -0.39 1.74 16 9 C 0.17 4.45 5.10 -17.46 -0.09 4.36 16 10 N -0.73 -17.74 11.98 55.50 0.67 -17.08 16 11 Si 0.83 20.87 27.67 -169.99 -4.70 16.16 16 12 H -0.25 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 15 C 0.12 2.41 3.18 -66.82 -0.21 2.20 16 16 C -0.14 -2.66 6.43 -25.03 -0.16 -2.82 16 17 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 18 C -0.11 -1.87 6.83 -25.07 -0.17 -2.05 16 19 C -0.12 -2.22 6.24 -25.61 -0.16 -2.38 16 20 C 0.10 1.67 12.02 -16.94 -0.20 1.47 16 21 N -0.30 -5.03 12.28 30.89 0.38 -4.65 16 22 N -0.33 -5.32 3.72 -6.31 -0.02 -5.34 16 23 C 0.21 2.87 6.29 -83.36 -0.52 2.34 16 24 C -0.19 -2.14 8.35 -39.26 -0.33 -2.47 16 25 C 0.12 1.21 11.17 -17.59 -0.20 1.02 16 26 N -0.49 -5.47 10.36 -13.33 -0.14 -5.61 16 27 C 0.12 1.19 11.17 -17.60 -0.20 0.99 16 28 C -0.17 -2.00 9.87 -39.26 -0.39 -2.38 16 29 H 0.09 1.25 6.52 -51.93 -0.34 0.91 16 30 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16 31 H 0.07 0.90 6.89 -51.93 -0.36 0.54 16 32 H 0.27 6.11 8.32 -40.82 -0.34 5.77 16 33 H 0.05 1.05 6.15 -51.92 -0.32 0.73 16 34 H 0.13 2.82 5.22 -51.93 -0.27 2.55 16 35 H 0.04 0.63 6.89 -51.93 -0.36 0.27 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.54 6.71 -51.93 -0.35 1.19 16 42 H 0.19 2.85 8.06 -52.49 -0.42 2.42 16 43 H 0.15 1.51 6.22 -52.49 -0.33 1.19 16 44 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -30.46 372.22 -8.10 -38.56 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.06 Total: 3.05 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.64 Total: -5.68 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.61 Total: -42.56 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.70 Total: 16.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.46 -8.10 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090602038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.972 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds