Wall clock time and date at job start Sat Apr 11 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38082 * 126.31919 * 2 1 4 4 C 1.47338 * 126.41711 * 359.97438 * 3 2 1 5 5 O 1.21628 * 120.00454 * 259.02966 * 4 3 2 6 6 N 1.34782 * 119.99817 * 79.03285 * 4 3 2 7 7 C 1.36978 * 119.99630 * 184.47656 * 6 4 3 8 8 H 1.08000 * 119.99885 * 247.22791 * 7 6 4 9 9 C 1.38973 * 120.00252 * 67.23272 * 7 6 4 10 10 N 1.31407 * 120.00009 * 74.20859 * 9 7 6 11 11 Si 1.86798 * 120.00254 * 254.20897 * 9 7 6 12 12 H 1.48504 * 109.46832 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47157 * 119.99439 * 11 9 7 14 14 H 1.48496 * 109.47349 * 239.99958 * 11 9 7 15 15 C 1.46490 * 120.00321 * 4.47717 * 6 4 3 16 16 C 1.54262 * 110.03451 * 242.93562 * 15 6 4 17 17 C 1.54964 * 104.16337 * 217.13395 * 16 15 6 18 18 C 1.54891 * 102.77644 * 37.88335 * 17 16 15 19 19 C 1.53875 * 110.03630 * 125.71123 * 15 6 4 20 20 C 1.41406 * 107.16820 * 180.25655 * 3 2 1 21 21 N 1.30442 * 108.08075 * 359.74965 * 20 3 2 22 22 N 1.34627 * 126.31902 * 179.81622 * 2 1 3 23 23 C 1.39914 * 125.77315 * 0.02562 * 22 2 1 24 24 C 1.39334 * 120.85197 * 324.68842 * 23 22 2 25 25 C 1.38001 * 119.07521 * 180.02562 * 24 23 22 26 26 N 1.31940 * 120.83578 * 0.02562 * 25 24 23 27 27 C 1.31936 * 121.88365 * 359.97438 * 26 25 24 28 28 C 1.37997 * 120.83505 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46965 * 270.20912 * 1 2 3 30 30 H 1.08996 * 109.46619 * 30.20842 * 1 2 3 31 31 H 1.08996 * 109.46677 * 150.20178 * 1 2 3 32 32 H 0.96999 * 120.00337 * 184.83591 * 10 9 7 33 33 H 1.09011 * 110.01764 * 4.32120 * 15 6 4 34 34 H 1.09006 * 110.48658 * 335.78029 * 16 15 6 35 35 H 1.08999 * 110.49219 * 98.42006 * 16 15 6 36 36 H 1.08996 * 110.72067 * 279.57228 * 17 16 15 37 37 H 1.09000 * 110.92857 * 156.28972 * 17 16 15 38 38 H 1.08997 * 110.48927 * 203.40634 * 18 17 16 39 39 H 1.09008 * 110.59932 * 80.81743 * 18 17 16 40 40 H 1.08993 * 110.03555 * 238.57004 * 19 15 6 41 41 H 1.08997 * 110.03027 * 0.02562 * 19 15 6 42 42 H 1.08001 * 125.96157 * 179.75967 * 20 3 2 43 43 H 1.07994 * 120.46245 * 0.04765 * 24 23 22 44 44 H 1.07997 * 119.58239 * 180.27896 * 25 24 23 45 45 H 1.08001 * 119.58169 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.46047 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.1126 0.0000 4 6 1.8876 2.5196 -0.0005 5 8 1.8989 3.1596 -1.0347 6 7 1.4752 3.0975 1.1451 7 6 0.9825 4.3755 1.1287 8 1 1.5303 5.1716 1.6108 9 6 -0.2224 4.6476 0.4918 10 7 -1.3561 4.2824 1.0468 11 14 -0.2303 5.5327 -1.1531 12 1 1.1658 5.8342 -1.5597 13 1 -0.8689 4.6677 -2.1776 14 1 -0.9941 6.8002 -1.0297 15 6 1.5538 2.3589 2.4078 16 6 0.1393 2.1499 2.9867 17 6 0.3304 2.2974 4.5174 18 6 1.3750 3.4360 4.6240 19 6 2.3395 3.1759 3.4484 20 6 3.6607 0.6487 -0.0060 21 7 3.6363 -0.6555 -0.0040 22 7 2.3044 -1.0847 0.0035 23 6 1.8742 -2.4161 0.0072 24 6 0.7254 -2.7938 0.6994 25 6 0.3348 -4.1172 0.6788 26 7 1.0341 -5.0186 0.0159 27 6 2.1269 -4.7002 -0.6512 28 6 2.5840 -3.3984 -0.6801 29 1 -0.3633 0.0038 1.0276 30 1 -0.3632 0.8881 -0.5171 31 1 -0.3632 -0.8918 -0.5107 32 1 -2.1920 4.4089 0.5711 33 1 2.0375 1.3953 2.2470 34 1 -0.5429 2.9133 2.6123 35 1 -0.2299 1.1540 2.7418 36 1 0.7194 1.3748 4.9481 37 1 -0.6037 2.5837 5.0006 38 1 1.9069 3.3782 5.5737 39 1 0.8947 4.4085 4.5154 40 1 3.2040 2.6087 3.7932 41 1 2.6620 4.1222 3.0140 42 1 4.5465 1.2664 -0.0113 43 1 0.1485 -2.0611 1.2440 44 1 -0.5568 -4.4183 1.2087 45 1 2.6706 -5.4680 -1.1815 46 1 3.4791 -3.1445 -1.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090602038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:12 Heat of formation + Delta-G solvation = 85.475871 kcal Electronic energy + Delta-G solvation = -30548.981855 eV Core-core repulsion = 26633.494685 eV Total energy + Delta-G solvation = -3915.487170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.92317 -41.01477 -40.19286 -38.26381 -35.55902 -35.38405 -34.06077 -33.48456 -32.20421 -31.13986 -29.31215 -28.78964 -28.42395 -26.54703 -25.07811 -24.73976 -23.19049 -21.86505 -21.29035 -21.13266 -20.70802 -18.91107 -18.25963 -17.64114 -17.53278 -17.02112 -16.74111 -16.56087 -16.21189 -16.05088 -15.70520 -15.31027 -15.21168 -15.11740 -14.82954 -14.70484 -14.30695 -14.19795 -14.01688 -13.91996 -13.79930 -13.34121 -13.09456 -12.84121 -12.72926 -12.39652 -12.32811 -12.08859 -12.00854 -11.76211 -11.69611 -11.64149 -11.31198 -11.16040 -10.72067 -10.47600 -10.29905 -10.23764 -10.16354 -9.50384 -9.41532 -8.46179 -5.87512 -0.40697 0.01595 0.80792 1.08044 1.20621 1.38893 1.43685 1.68205 2.08798 2.26674 2.61062 2.67716 3.18315 3.38827 3.45387 3.47390 3.71093 3.82111 3.93564 3.98546 4.01903 4.04230 4.17130 4.33848 4.41466 4.44639 4.49274 4.61105 4.65659 4.73483 4.75481 4.82173 4.87693 4.95503 4.95860 4.96858 5.02585 5.21520 5.28014 5.30398 5.32685 5.37110 5.47942 5.59643 5.65433 5.90108 6.06787 6.37029 6.48182 6.86109 7.03223 7.17790 7.59059 8.05891 8.34705 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.004112 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.104910 B = 6807.220945 C = 7481.342383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.121 3.879 3 C -0.266 4.266 4 C 0.539 3.461 5 O -0.606 6.606 6 N -0.418 5.418 7 C -0.471 4.471 8 H 0.055 0.945 9 C 0.166 3.834 10 N -0.723 5.723 11 Si 0.848 3.152 12 H -0.291 1.291 13 H -0.291 1.291 14 H -0.285 1.285 15 C 0.125 3.875 16 C -0.142 4.142 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.121 4.121 20 C 0.092 3.908 21 N -0.300 5.300 22 N -0.322 5.322 23 C 0.176 3.824 24 C -0.187 4.187 25 C 0.128 3.872 26 N -0.503 5.503 27 C 0.124 3.876 28 C -0.175 4.175 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.282 0.718 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.209 0.791 43 H 0.156 0.844 44 H 0.199 0.801 45 H 0.194 0.806 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -16.842 5.163 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.280 4.280 4 C 0.327 3.673 5 O -0.491 6.491 6 N -0.137 5.137 7 C -0.589 4.589 8 H 0.073 0.927 9 C -0.061 4.061 10 N -0.345 5.345 11 Si 0.672 3.328 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.212 1.212 15 C 0.022 3.978 16 C -0.180 4.180 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.095 4.095 21 N -0.117 5.117 22 N -0.098 5.098 23 C 0.077 3.923 24 C -0.209 4.209 25 C -0.029 4.029 26 N -0.213 5.213 27 C -0.032 4.032 28 C -0.196 4.196 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.174 0.826 44 H 0.215 0.785 45 H 0.211 0.789 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.785 -18.507 4.828 19.143 hybrid contribution 0.113 2.849 -1.419 3.185 sum 0.898 -15.658 3.409 16.050 Atomic orbital electron populations 1.20714 0.85213 1.04124 1.04934 1.21671 0.95368 0.85319 0.98146 1.20403 0.94304 0.93887 1.19407 1.18216 0.78825 0.85096 0.85179 1.90531 1.58986 1.65644 1.33940 1.43187 1.53784 1.12416 1.04269 1.17376 1.06117 0.84807 1.50613 0.92724 1.25261 0.93567 0.90657 0.96644 1.70765 0.99668 1.30965 1.33059 0.87439 0.77656 0.79187 0.88474 1.21750 1.21771 1.21183 1.21987 0.96289 0.93551 0.85946 1.22907 0.97732 1.01673 0.95689 1.22355 0.98741 0.98268 0.95393 1.22170 0.96664 0.98580 0.97211 1.22281 0.98023 0.99711 0.95952 1.24299 0.97449 0.91448 0.96320 1.77149 0.95353 1.12898 1.26312 1.45495 1.04286 1.03589 1.56424 1.18162 0.96059 0.80574 0.97500 1.22409 0.97351 0.99962 1.01162 1.23214 0.98762 0.86941 0.93957 1.67803 1.07140 1.38056 1.08301 1.23162 0.91785 0.94105 0.94166 1.22184 1.02537 0.93970 1.00951 0.87591 0.91781 0.88207 0.90590 0.91979 0.88529 0.92988 0.90851 0.91573 0.90559 0.93398 0.91546 0.93496 0.77454 0.82629 0.78472 0.78938 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 8.44 71.24 0.60 -2.06 16 2 C 0.12 4.10 6.66 42.09 0.28 4.38 16 3 C -0.27 -10.59 3.86 -20.14 -0.08 -10.66 16 4 C 0.54 26.42 6.98 86.64 0.60 27.03 16 5 O -0.61 -35.10 14.87 -4.12 -0.06 -35.16 16 6 N -0.42 -19.88 2.49 -613.14 -1.53 -21.41 16 7 C -0.47 -25.14 6.87 84.07 0.58 -24.56 16 8 H 0.06 3.14 7.34 -2.91 -0.02 3.12 16 9 C 0.17 8.67 5.10 84.93 0.43 9.11 16 10 N -0.72 -35.08 11.98 21.67 0.26 -34.82 16 11 Si 0.85 43.99 27.67 68.60 1.90 45.89 16 12 H -0.29 -16.88 7.11 99.48 0.71 -16.17 16 13 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 14 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 15 C 0.12 4.87 3.18 45.72 0.15 5.02 16 16 C -0.14 -5.13 6.43 31.69 0.20 -4.92 16 17 C -0.11 -3.23 6.91 31.91 0.22 -3.01 16 18 C -0.11 -3.41 6.83 31.67 0.22 -3.20 16 19 C -0.12 -4.36 6.24 31.32 0.20 -4.16 16 20 C 0.09 3.22 12.02 85.68 1.03 4.25 16 21 N -0.30 -9.86 12.28 -56.20 -0.69 -10.55 16 22 N -0.32 -9.88 3.72 -173.89 -0.65 -10.53 16 23 C 0.18 4.35 6.29 38.38 0.24 4.59 16 24 C -0.19 -3.59 8.35 22.48 0.19 -3.41 16 25 C 0.13 2.04 11.17 84.62 0.95 2.99 16 26 N -0.50 -9.32 10.36 -196.07 -2.03 -11.35 16 27 C 0.12 2.11 11.17 84.62 0.95 3.06 16 28 C -0.17 -3.70 9.87 22.47 0.22 -3.47 16 29 H 0.11 2.70 6.52 -2.39 -0.02 2.68 16 30 H 0.06 2.27 7.97 -2.39 -0.02 2.25 16 31 H 0.10 2.27 6.89 -2.39 -0.02 2.26 16 32 H 0.28 12.60 8.32 -92.71 -0.77 11.83 16 33 H 0.06 2.33 6.15 -2.38 -0.01 2.32 16 34 H 0.10 4.20 5.22 -2.38 -0.01 4.19 16 35 H 0.05 1.67 6.89 -2.39 -0.02 1.66 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.95 6.71 -2.39 -0.02 1.93 16 42 H 0.21 6.23 8.06 -2.91 -0.02 6.20 16 43 H 0.16 2.64 6.22 -2.91 -0.02 2.63 16 44 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -69.14 372.22 5.18 -63.96 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.01 Total: 13.02 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.97 Total: 0.96 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -4.63 Total: -88.66 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.06 Total: -35.16 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.89 kcal Total: -69.14 5.18 -63.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090602038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.431 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds