Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38279 * 119.93683 * 2 1 4 4 C 1.38110 * 120.06725 * 180.02562 * 3 2 1 5 5 C 1.38828 * 119.93843 * 359.97438 * 4 3 2 6 6 N 1.40227 * 120.06872 * 179.97438 * 5 4 3 7 7 C 1.35076 * 126.61309 * 180.31650 * 6 5 4 8 8 C 1.36615 * 106.79378 * 180.16941 * 7 6 5 9 9 C 1.47514 * 125.76534 * 179.84304 * 8 7 6 10 10 O 1.21596 * 120.00318 * 4.26623 * 9 8 7 11 11 N 1.34778 * 119.99898 * 184.26977 * 9 8 7 12 12 C 1.46492 * 120.00367 * 184.32664 * 11 9 8 13 13 C 1.50700 * 109.47478 * 270.00120 * 12 11 9 14 14 H 1.08003 * 119.99390 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00488 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99949 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00207 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46865 * 90.00016 * 17 15 13 19 19 H 1.48497 * 109.47064 * 210.00189 * 17 15 13 20 20 H 1.48501 * 109.46871 * 330.00330 * 17 15 13 21 21 C 1.46505 * 119.99898 * 4.32215 * 11 9 8 22 22 C 1.53008 * 109.46634 * 83.12091 * 21 11 9 23 23 C 1.52999 * 117.49848 * 116.25626 * 22 21 11 24 24 C 1.53007 * 117.49581 * 184.91295 * 22 21 11 25 25 N 1.34418 * 108.46816 * 359.57478 * 8 7 6 26 26 N 1.28751 * 109.57484 * 0.26386 * 25 8 7 27 27 C 1.38827 * 119.86638 * 0.25545 * 5 4 3 28 28 C 1.38125 * 119.93503 * 359.51370 * 27 5 4 29 29 H 1.09000 * 109.47373 * 89.99972 * 1 2 3 30 30 H 1.09005 * 109.46959 * 210.00221 * 1 2 3 31 31 H 1.09001 * 109.47327 * 329.99672 * 1 2 3 32 32 H 1.08001 * 119.95834 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.03445 * 179.97438 * 4 3 2 34 34 H 1.08008 * 126.60317 * 0.02562 * 7 6 5 35 35 H 1.09005 * 109.46988 * 29.99616 * 12 11 9 36 36 H 1.09001 * 109.47866 * 149.99735 * 12 11 9 37 37 H 0.97004 * 120.00126 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47261 * 323.12354 * 21 11 9 39 39 H 1.08997 * 109.47216 * 203.11232 * 21 11 9 40 40 H 1.08995 * 115.55230 * 330.58044 * 22 21 11 41 41 H 1.09000 * 117.49608 * 215.00453 * 23 22 21 42 42 H 1.09002 * 117.49624 * 0.02562 * 23 22 21 43 43 H 1.09000 * 117.49464 * 359.97377 * 24 22 21 44 44 H 1.08996 * 117.49494 * 144.99669 * 24 22 21 45 45 H 1.07999 * 120.03730 * 179.74664 * 27 5 4 46 46 H 1.07999 * 119.97478 * 180.23442 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5782 1.2014 -0.0005 5 6 4.2738 0.0000 -0.0005 6 7 5.6760 0.0000 -0.0016 7 6 6.4816 -1.0842 -0.0077 8 6 7.7669 -0.6211 -0.0025 9 6 8.9838 -1.4548 -0.0030 10 8 8.8921 -2.6644 -0.0867 11 7 10.1973 -0.8758 0.0894 12 6 11.4086 -1.6941 -0.0063 13 6 11.8072 -2.1644 1.3689 14 1 11.2174 -1.8815 2.2283 15 6 12.9247 -2.9557 1.5299 16 7 13.6432 -3.2997 0.4835 17 14 13.4192 -3.5380 3.2347 18 1 12.7623 -4.8381 3.5234 19 1 14.8936 -3.7046 3.2925 20 1 12.9945 -2.5340 4.2431 21 6 10.3052 0.5720 0.2856 22 6 10.1534 0.8978 1.7728 23 6 11.3545 1.5229 2.4853 24 6 10.1214 2.3743 2.1729 25 7 7.7352 0.7228 -0.0028 26 7 6.5123 1.1254 -0.0023 27 6 3.5783 -1.2015 -0.0054 28 6 2.1970 -1.1984 0.0000 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6554 2.1326 -0.0004 33 1 4.1166 2.1377 -0.0010 34 1 6.1697 -2.1183 -0.0131 35 1 11.2146 -2.5572 -0.6433 36 1 12.2156 -1.1001 -0.4352 37 1 14.4293 -3.8567 0.5967 38 1 9.5195 1.0746 -0.2785 39 1 11.2792 0.9145 -0.0637 40 1 9.5323 0.2080 2.3442 41 1 11.5237 1.2442 3.5254 42 1 12.2526 1.7024 1.8943 43 1 10.2088 3.1135 1.3765 44 1 9.4792 2.6557 3.0074 45 1 4.1166 -2.1378 -0.0095 46 1 1.6553 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = 129.151844 kcal Electronic energy + Delta-G solvation = -28778.403227 eV Core-core repulsion = 24864.809989 eV Total energy + Delta-G solvation = -3913.593238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38254 -39.84061 -38.76563 -36.86566 -35.23414 -34.31586 -32.50524 -31.97273 -31.57827 -30.69120 -27.98340 -27.05781 -26.04834 -24.26967 -23.60729 -23.03796 -21.84637 -21.54230 -21.24946 -20.37905 -19.47649 -17.96597 -16.51633 -16.33202 -16.07535 -15.94021 -15.75369 -15.42103 -14.97948 -14.67334 -14.38914 -14.24745 -14.15905 -14.07310 -13.90432 -13.29616 -12.91270 -12.79360 -12.75514 -12.44959 -12.25666 -12.13713 -11.98888 -11.43379 -11.29931 -11.16281 -11.10047 -11.08071 -10.83597 -10.74465 -10.56172 -10.19951 -9.81578 -9.54121 -9.51385 -9.39925 -9.35533 -9.05345 -8.60032 -8.35857 -7.61385 -5.97179 -3.99815 0.23951 0.84585 1.58827 1.89364 1.96968 3.25208 3.35789 3.41365 3.44349 3.74073 3.90339 4.14021 4.27251 4.35558 4.40312 4.46864 4.50174 4.57022 4.81639 4.88082 4.99428 5.08904 5.10439 5.14648 5.28607 5.30762 5.36947 5.46135 5.48631 5.51222 5.57023 5.70495 5.78731 5.96211 5.99249 6.05758 6.07755 6.20916 6.22467 6.41808 6.49639 6.59592 6.62625 6.84279 7.11191 7.45612 7.59091 7.95152 8.00325 8.30283 8.42149 8.91014 9.08379 9.63868 11.11237 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002648 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.545269 B =10570.807896 C =11424.954664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.100 4.100 4 C -0.102 4.102 5 C 0.136 3.864 6 N -0.316 5.316 7 C 0.081 3.919 8 C -0.073 4.073 9 C 0.587 3.413 10 O -0.536 6.536 11 N -0.575 5.575 12 C 0.247 3.753 13 C -0.513 4.513 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.130 3.870 22 C -0.138 4.138 23 C -0.171 4.171 24 C -0.181 4.181 25 N -0.186 5.186 26 N -0.069 5.069 27 C -0.122 4.122 28 C -0.097 4.097 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.204 0.796 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.262 0.738 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.549 10.046 -1.516 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.122 4.122 5 C 0.044 3.956 6 N -0.096 5.096 7 C -0.072 4.072 8 C -0.211 4.211 9 C 0.370 3.630 10 O -0.413 6.413 11 N -0.304 5.304 12 C 0.128 3.872 13 C -0.552 4.552 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.537 5.537 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C 0.006 3.994 22 C -0.157 4.157 23 C -0.208 4.208 24 C -0.219 4.219 25 N -0.059 5.059 26 N -0.047 5.047 27 C -0.143 4.143 28 C -0.115 4.115 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.221 0.779 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.154 0.846 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.252 10.814 -1.626 26.603 hybrid contribution 0.371 -1.444 1.148 1.882 sum -23.881 9.370 -0.478 25.657 Atomic orbital electron populations 1.20823 0.90541 1.03190 1.02689 1.20094 0.96676 0.93008 0.98943 1.20971 0.92930 0.98228 0.99734 1.20953 0.94351 0.96966 0.99952 1.17617 0.77787 0.95669 1.04510 1.47595 1.05681 1.06743 1.49552 1.23335 0.89937 0.94729 0.99153 1.21985 0.95181 0.90095 1.13814 1.16717 0.81614 0.86134 0.78486 1.90788 1.85926 1.12962 1.51615 1.48058 1.06576 1.08061 1.67665 1.19390 0.79419 0.90511 0.97900 1.21384 1.09964 1.30776 0.93097 0.92305 1.24901 0.96332 0.96027 0.96863 1.69932 1.17452 1.37260 1.29061 0.86544 0.77403 0.79187 0.84567 1.20695 1.21265 1.19963 1.21547 1.02868 0.81199 0.93835 1.22504 1.01526 0.94628 0.97063 1.22936 0.92712 1.03896 1.01296 1.22870 1.01873 0.94231 1.02934 1.74762 1.10977 1.10591 1.09586 1.82027 0.93818 1.06128 1.22735 1.20992 0.94923 0.96350 1.02032 1.20909 0.92700 0.98302 0.99617 0.90781 0.91201 0.91222 0.84774 0.84040 0.77887 0.93823 0.94698 0.92858 0.87791 0.90821 0.88891 0.89593 0.88796 0.89113 0.89874 0.84575 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.01 36.01 0.36 -0.10 16 2 C -0.09 -0.56 5.88 -104.59 -0.62 -1.17 16 3 C -0.10 -0.70 9.69 -39.61 -0.38 -1.09 16 4 C -0.10 -0.95 9.68 -39.41 -0.38 -1.33 16 5 C 0.14 1.46 6.70 -83.58 -0.56 0.90 16 6 N -0.32 -4.23 3.82 -10.42 -0.04 -4.27 16 7 C 0.08 1.16 10.60 -16.71 -0.18 0.99 16 8 C -0.07 -1.30 6.70 -83.54 -0.56 -1.86 16 9 C 0.59 12.83 7.61 -12.48 -0.09 12.73 16 10 O -0.54 -13.34 16.49 5.28 0.09 -13.26 16 11 N -0.57 -12.84 2.47 -176.29 -0.44 -13.28 16 12 C 0.25 6.51 5.17 -5.20 -0.03 6.49 16 13 C -0.51 -14.59 9.39 -34.44 -0.32 -14.91 16 14 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.13 2.43 5.32 -4.03 -0.02 2.41 16 22 C -0.14 -2.48 5.40 -90.61 -0.49 -2.97 16 23 C -0.17 -2.88 10.18 -26.69 -0.27 -3.15 16 24 C -0.18 -2.69 10.26 -26.69 -0.27 -2.96 16 25 N -0.19 -3.12 8.32 32.85 0.27 -2.85 16 26 N -0.07 -1.05 13.12 60.35 0.79 -0.26 16 27 C -0.12 -1.04 9.47 -39.40 -0.37 -1.42 16 28 C -0.10 -0.66 9.69 -39.60 -0.38 -1.04 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.14 1.30 7.73 -52.49 -0.41 0.90 16 34 H 0.20 2.34 7.13 -52.48 -0.37 1.96 16 35 H 0.04 1.28 7.48 -51.93 -0.39 0.89 16 36 H 0.04 0.93 7.85 -51.93 -0.41 0.53 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.10 1.82 5.01 -51.93 -0.26 1.56 16 39 H 0.07 1.35 7.55 -51.93 -0.39 0.95 16 40 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.14 0.98 6.81 -52.49 -0.36 0.63 16 46 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -33.70 392.27 -8.72 -42.42 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.35 Total: 1.28 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.67 Total: -6.85 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.33 Total: -46.69 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.70 -8.72 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.569 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds