Wall clock time and date at job start Sat Apr 11 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38307 * 119.96842 * 2 1 4 4 C 1.38251 * 120.12847 * 180.02562 * 3 2 1 5 5 C 1.38140 * 120.07093 * 359.97438 * 4 3 2 6 6 C 1.38798 * 119.93273 * 0.02562 * 5 4 3 7 7 N 1.40233 * 120.06538 * 180.02562 * 6 5 4 8 8 C 1.35091 * 126.60918 * 5.32703 * 7 6 5 9 9 C 1.36698 * 106.78121 * 180.11691 * 8 7 6 10 10 C 1.47416 * 125.77616 * 179.84008 * 9 8 7 11 11 O 1.21629 * 119.99909 * 5.89468 * 10 9 8 12 12 N 1.34775 * 119.99991 * 185.89731 * 10 9 8 13 13 C 1.36947 * 120.00263 * 5.97848 * 12 10 9 14 14 H 1.07999 * 120.00305 * 238.51508 * 13 12 10 15 15 C 1.38987 * 119.99848 * 58.50814 * 13 12 10 16 16 N 1.31404 * 120.00292 * 356.78543 * 15 13 12 17 17 Si 1.86805 * 119.99884 * 176.79014 * 15 13 12 18 18 H 1.48497 * 109.47362 * 90.00340 * 17 15 13 19 19 H 1.48501 * 109.46740 * 210.00223 * 17 15 13 20 20 H 1.48499 * 109.47217 * 329.99703 * 17 15 13 21 21 C 1.46506 * 119.99961 * 185.98095 * 12 10 9 22 22 C 1.55236 * 110.57937 * 229.97938 * 21 12 10 23 23 C 1.54891 * 102.58883 * 203.33620 * 22 21 12 24 24 C 1.54262 * 104.30874 * 37.93332 * 23 22 21 25 25 C 1.53874 * 106.60202 * 336.32218 * 24 23 22 26 26 N 1.34442 * 108.44748 * 359.57599 * 9 8 7 27 27 N 1.28747 * 109.58341 * 0.26729 * 26 9 8 28 28 C 1.38101 * 119.96763 * 180.27859 * 2 1 3 29 29 H 1.08998 * 109.46814 * 89.99589 * 1 2 3 30 30 H 1.09004 * 109.46802 * 209.99773 * 1 2 3 31 31 H 1.09001 * 109.46787 * 329.99767 * 1 2 3 32 32 H 1.07995 * 119.93064 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.96053 * 179.97438 * 4 3 2 34 34 H 1.08009 * 120.03409 * 180.02562 * 5 4 3 35 35 H 1.08003 * 126.61256 * 359.95930 * 8 7 6 36 36 H 0.97000 * 120.00391 * 179.97438 * 16 15 13 37 37 H 1.09004 * 110.43472 * 352.56178 * 21 12 10 38 38 H 1.09007 * 110.89666 * 85.04862 * 22 21 12 39 39 H 1.08999 * 110.76764 * 321.57332 * 22 21 12 40 40 H 1.08997 * 110.48524 * 279.18759 * 23 22 21 41 41 H 1.08994 * 110.48266 * 156.67707 * 23 22 21 42 42 H 1.08997 * 110.03351 * 95.60671 * 24 23 22 43 43 H 1.09001 * 110.03222 * 216.98515 * 24 23 22 44 44 H 1.09003 * 110.03481 * 119.28436 * 25 24 23 45 45 H 1.08999 * 110.03077 * 240.66653 * 25 24 23 46 46 H 1.07997 * 120.03522 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5804 1.2020 -0.0005 5 6 4.2759 0.0085 -0.0005 6 6 3.5854 -1.1955 -0.0005 7 7 4.2886 -2.4088 0.0000 8 6 5.6267 -2.5643 0.1012 9 6 5.8724 -3.9082 0.0559 10 6 7.2001 -4.5446 0.1296 11 8 8.1872 -3.8685 0.3482 12 7 7.3201 -5.8755 -0.0454 13 6 6.2301 -6.6190 -0.4122 14 1 5.8963 -7.4332 0.2139 15 6 5.5533 -6.3256 -1.5901 16 7 5.9200 -5.2961 -2.3197 17 14 4.1221 -7.3948 -2.1361 18 1 2.8589 -6.8585 -1.5689 19 1 4.0395 -7.3918 -3.6188 20 1 4.3303 -8.7842 -1.6549 21 6 8.6167 -6.5270 0.1568 22 6 8.9675 -7.4319 -1.0547 23 6 9.9647 -8.4459 -0.4411 24 6 9.4082 -8.7211 0.9710 25 6 8.5511 -7.5010 1.3513 26 7 4.6978 -4.5517 -0.0614 27 7 3.7379 -3.6945 -0.0975 28 6 2.1968 -1.1964 -0.0058 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6563 2.1325 -0.0004 33 1 4.1172 2.1393 -0.0010 34 1 5.3560 0.0122 -0.0005 35 1 6.3611 -1.7782 0.1967 36 1 5.4479 -5.0916 -3.1420 37 1 9.3965 -5.7818 0.3145 38 1 9.4431 -6.8537 -1.8471 39 1 8.0786 -7.9412 -1.4270 40 1 10.9622 -8.0107 -0.3800 41 1 9.9853 -9.3637 -1.0286 42 1 8.7932 -9.6209 0.9612 43 1 10.2284 -8.8375 1.6795 44 1 7.5201 -7.8087 1.5259 45 1 8.9549 -7.0249 2.2448 46 1 1.6569 -2.1317 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125120610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:24 Heat of formation + Delta-G solvation = 95.842275 kcal Electronic energy + Delta-G solvation = -29665.066894 eV Core-core repulsion = 25750.029244 eV Total energy + Delta-G solvation = -3915.037649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47405 -39.36598 -38.61288 -36.55047 -34.56877 -33.90394 -32.42517 -31.28769 -30.37114 -29.34785 -27.96431 -27.10881 -26.90911 -24.79584 -23.79569 -22.94691 -21.55846 -20.46536 -19.79754 -19.63246 -19.36562 -17.94325 -16.59943 -15.98496 -15.74675 -15.36811 -15.13356 -14.93845 -14.65699 -14.44604 -14.20292 -13.88399 -13.71036 -13.57234 -13.20730 -13.15964 -12.63819 -12.50522 -12.42596 -12.28865 -11.72909 -11.61433 -11.46139 -11.30760 -11.14802 -10.94518 -10.89924 -10.61885 -10.49820 -10.44522 -10.37187 -10.24626 -10.05724 -9.90075 -9.59058 -8.93115 -8.84528 -8.66769 -8.47074 -7.95160 -7.12941 -6.24208 -4.09012 0.82050 1.20503 2.27226 2.65940 2.93407 3.32573 3.37026 3.39687 3.68576 4.24599 4.50827 4.65282 4.69500 4.79974 4.90891 5.07559 5.16010 5.17974 5.19845 5.32669 5.35804 5.41684 5.44318 5.52514 5.57636 5.69432 5.78559 5.83753 6.01340 6.07550 6.10279 6.21822 6.23527 6.25523 6.30638 6.39743 6.42298 6.50564 6.52787 6.55022 6.67475 6.70901 6.89181 6.99347 7.08306 7.29062 7.31612 7.62179 8.05183 8.71059 8.94970 9.14869 9.61798 10.02595 10.83345 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.003332 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.273019 B = 8402.330785 C = 9476.790068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.066 4.066 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.143 4.143 6 C 0.169 3.831 7 N -0.336 5.336 8 C 0.048 3.952 9 C -0.001 4.001 10 C 0.590 3.410 11 O -0.610 6.610 12 N -0.430 5.430 13 C -0.330 4.330 14 H 0.080 0.920 15 C 0.087 3.913 16 N -0.869 5.869 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.271 1.271 21 C 0.137 3.863 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.131 4.131 26 N -0.124 5.124 27 N -0.102 5.102 28 C -0.118 4.118 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.190 0.810 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 8.067 3.839 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.164 4.164 6 C 0.075 3.925 7 N -0.116 5.116 8 C -0.102 4.102 9 C -0.137 4.137 10 C 0.378 3.622 11 O -0.495 6.495 12 N -0.147 5.147 13 C -0.459 4.459 14 H 0.097 0.903 15 C -0.121 4.121 16 N -0.504 5.504 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.196 1.196 21 C 0.032 3.968 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.170 4.170 26 N 0.002 4.998 27 N -0.080 5.080 28 C -0.138 4.138 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.207 0.793 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.542 7.565 3.646 10.062 hybrid contribution 0.108 0.206 -0.625 0.667 sum -5.434 7.771 3.022 9.952 Atomic orbital electron populations 1.20803 0.90606 1.03012 1.02632 1.19782 0.96331 0.92244 0.98337 1.21062 0.94195 0.97572 1.02433 1.20929 0.94123 0.97227 0.98712 1.20958 1.00631 0.90710 1.04125 1.17620 0.91558 0.82462 1.00820 1.47561 1.05480 1.07019 1.51516 1.23079 0.85142 0.99423 1.02574 1.21173 0.94507 0.89005 1.08997 1.16979 0.84729 0.83158 0.77304 1.90598 1.38251 1.64210 1.56457 1.42961 1.07449 1.04702 1.59608 1.18898 1.05685 1.16004 1.05279 0.90282 1.25362 0.97060 0.94997 0.94681 1.69828 1.39987 1.26141 1.14476 0.86224 0.82739 0.80215 0.77208 1.19398 1.21541 1.19574 1.21883 0.87623 0.93744 0.93502 1.22691 0.98983 0.96595 0.97257 1.22308 0.98667 0.99097 0.96122 1.22024 0.98591 0.98269 0.96550 1.22428 1.00686 0.95768 0.98086 1.75167 0.97513 1.22228 1.04877 1.82051 1.19725 0.81787 1.24434 1.20815 0.91598 0.99231 1.02162 0.90869 0.91189 0.91318 0.85656 0.85082 0.84981 0.79341 0.92400 0.90020 0.92588 0.89595 0.92471 0.92426 0.92305 0.92858 0.90837 0.92904 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.07 -0.75 5.88 -104.65 -0.62 -1.37 16 3 C -0.13 -1.34 9.70 -39.55 -0.38 -1.73 16 4 C -0.09 -0.96 10.04 -39.61 -0.40 -1.35 16 5 C -0.14 -1.89 9.47 -39.41 -0.37 -2.26 16 6 C 0.17 2.72 6.69 -83.58 -0.56 2.16 16 7 N -0.34 -6.66 3.82 -10.40 -0.04 -6.70 16 8 C 0.05 1.01 10.60 -16.67 -0.18 0.83 16 9 C 0.00 -0.02 5.42 -83.54 -0.45 -0.47 16 10 C 0.59 15.47 6.90 -12.52 -0.09 15.38 16 11 O -0.61 -16.51 16.25 5.25 0.09 -16.42 16 12 N -0.43 -10.78 2.46 -106.98 -0.26 -11.04 16 13 C -0.33 -8.41 5.96 -14.99 -0.09 -8.50 16 14 H 0.08 2.01 7.11 -52.49 -0.37 1.63 16 15 C 0.09 2.25 3.23 -17.46 -0.06 2.20 16 16 N -0.87 -23.79 11.14 55.50 0.62 -23.17 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.14 2.98 3.25 -66.08 -0.21 2.76 16 22 C -0.12 -2.34 6.39 -24.55 -0.16 -2.50 16 23 C -0.12 -1.97 6.82 -25.07 -0.17 -2.14 16 24 C -0.12 -1.81 6.80 -25.62 -0.17 -1.98 16 25 C -0.13 -2.44 6.43 -25.62 -0.16 -2.60 16 26 N -0.12 -3.11 8.03 32.85 0.26 -2.84 16 27 N -0.10 -2.32 13.13 60.35 0.79 -1.53 16 28 C -0.12 -1.70 9.33 -39.40 -0.37 -2.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.13 1.59 6.84 -52.48 -0.36 1.23 16 35 H 0.19 3.33 7.16 -52.48 -0.38 2.95 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 38 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 39 H 0.09 1.88 7.02 -51.93 -0.36 1.51 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.45 6.87 -51.93 -0.36 1.10 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.14 2.08 7.74 -52.49 -0.41 1.68 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -31.13 375.94 -8.36 -39.49 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.38 Total: 4.68 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -4.08 Total: -4.23 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 1.37 Total: -45.28 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.09 Total: -16.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.13 -8.36 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125120610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.329 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds