Wall clock time and date at job start Sat Apr 11 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38307 * 119.96842 * 2 1 4 4 C 1.38251 * 120.12847 * 180.02562 * 3 2 1 5 5 C 1.38140 * 120.07093 * 359.97438 * 4 3 2 6 6 C 1.38798 * 119.93273 * 0.02562 * 5 4 3 7 7 N 1.40233 * 120.06538 * 180.02562 * 6 5 4 8 8 C 1.35091 * 126.60918 * 5.32703 * 7 6 5 9 9 C 1.36698 * 106.78121 * 180.11691 * 8 7 6 10 10 C 1.47416 * 125.77616 * 179.84008 * 9 8 7 11 11 O 1.21629 * 119.99909 * 5.89468 * 10 9 8 12 12 N 1.34775 * 119.99991 * 185.89731 * 10 9 8 13 13 C 1.36947 * 120.00263 * 5.97848 * 12 10 9 14 14 H 1.07999 * 120.00305 * 238.51508 * 13 12 10 15 15 C 1.38987 * 119.99848 * 58.50814 * 13 12 10 16 16 N 1.31404 * 120.00292 * 356.78543 * 15 13 12 17 17 Si 1.86805 * 119.99884 * 176.79014 * 15 13 12 18 18 H 1.48497 * 109.47362 * 90.00340 * 17 15 13 19 19 H 1.48501 * 109.46740 * 210.00223 * 17 15 13 20 20 H 1.48499 * 109.47217 * 329.99703 * 17 15 13 21 21 C 1.46506 * 119.99961 * 185.98095 * 12 10 9 22 22 C 1.55236 * 110.57937 * 229.97938 * 21 12 10 23 23 C 1.54891 * 102.58883 * 203.33620 * 22 21 12 24 24 C 1.54262 * 104.30874 * 37.93332 * 23 22 21 25 25 C 1.53874 * 106.60202 * 336.32218 * 24 23 22 26 26 N 1.34442 * 108.44748 * 359.57599 * 9 8 7 27 27 N 1.28747 * 109.58341 * 0.26729 * 26 9 8 28 28 C 1.38101 * 119.96763 * 180.27859 * 2 1 3 29 29 H 1.08998 * 109.46814 * 89.99589 * 1 2 3 30 30 H 1.09004 * 109.46802 * 209.99773 * 1 2 3 31 31 H 1.09001 * 109.46787 * 329.99767 * 1 2 3 32 32 H 1.07995 * 119.93064 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.96053 * 179.97438 * 4 3 2 34 34 H 1.08009 * 120.03409 * 180.02562 * 5 4 3 35 35 H 1.08003 * 126.61256 * 359.95930 * 8 7 6 36 36 H 0.97000 * 120.00391 * 179.97438 * 16 15 13 37 37 H 1.09004 * 110.43472 * 352.56178 * 21 12 10 38 38 H 1.09007 * 110.89666 * 85.04862 * 22 21 12 39 39 H 1.08999 * 110.76764 * 321.57332 * 22 21 12 40 40 H 1.08997 * 110.48524 * 279.18759 * 23 22 21 41 41 H 1.08994 * 110.48266 * 156.67707 * 23 22 21 42 42 H 1.08997 * 110.03351 * 95.60671 * 24 23 22 43 43 H 1.09001 * 110.03222 * 216.98515 * 24 23 22 44 44 H 1.09003 * 110.03481 * 119.28436 * 25 24 23 45 45 H 1.08999 * 110.03077 * 240.66653 * 25 24 23 46 46 H 1.07997 * 120.03522 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5804 1.2020 -0.0005 5 6 4.2759 0.0085 -0.0005 6 6 3.5854 -1.1955 -0.0005 7 7 4.2886 -2.4088 0.0000 8 6 5.6267 -2.5643 0.1012 9 6 5.8724 -3.9082 0.0559 10 6 7.2001 -4.5446 0.1296 11 8 8.1872 -3.8685 0.3482 12 7 7.3201 -5.8755 -0.0454 13 6 6.2301 -6.6190 -0.4122 14 1 5.8963 -7.4332 0.2139 15 6 5.5533 -6.3256 -1.5901 16 7 5.9200 -5.2961 -2.3197 17 14 4.1221 -7.3948 -2.1361 18 1 2.8589 -6.8585 -1.5689 19 1 4.0395 -7.3918 -3.6188 20 1 4.3303 -8.7842 -1.6549 21 6 8.6167 -6.5270 0.1568 22 6 8.9675 -7.4319 -1.0547 23 6 9.9647 -8.4459 -0.4411 24 6 9.4082 -8.7211 0.9710 25 6 8.5511 -7.5010 1.3513 26 7 4.6978 -4.5517 -0.0614 27 7 3.7379 -3.6945 -0.0975 28 6 2.1968 -1.1964 -0.0058 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6563 2.1325 -0.0004 33 1 4.1172 2.1393 -0.0010 34 1 5.3560 0.0122 -0.0005 35 1 6.3611 -1.7782 0.1967 36 1 5.4479 -5.0916 -3.1420 37 1 9.3965 -5.7818 0.3145 38 1 9.4431 -6.8537 -1.8471 39 1 8.0786 -7.9412 -1.4270 40 1 10.9622 -8.0107 -0.3800 41 1 9.9853 -9.3637 -1.0286 42 1 8.7932 -9.6209 0.9612 43 1 10.2284 -8.8375 1.6795 44 1 7.5201 -7.8087 1.5259 45 1 8.9549 -7.0249 2.2448 46 1 1.6569 -2.1317 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125120610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:23 Heat of formation + Delta-G solvation = 79.109241 kcal Electronic energy + Delta-G solvation = -29665.792493 eV Core-core repulsion = 25750.029244 eV Total energy + Delta-G solvation = -3915.763248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.10685 -40.65498 -40.18713 -38.24323 -36.20097 -35.47040 -33.39431 -33.21246 -31.93754 -30.72570 -29.44881 -28.53083 -27.93394 -26.76843 -25.15725 -24.44487 -22.90171 -21.74968 -21.37465 -21.26419 -21.01674 -19.40870 -18.02252 -17.62269 -17.22497 -16.90023 -16.74485 -16.32958 -16.23203 -15.90773 -15.74845 -15.28561 -15.06829 -14.87774 -14.63835 -14.27604 -14.17039 -14.12726 -13.46832 -13.39786 -13.19584 -13.10677 -13.04678 -12.84682 -12.68041 -12.56194 -12.23017 -12.09184 -12.05488 -11.96055 -11.86089 -11.82856 -11.76606 -11.37772 -11.13316 -10.80347 -10.42360 -10.24007 -9.86224 -9.37994 -9.04042 -8.24139 -6.11869 -0.42967 0.25363 0.87956 1.08533 1.21372 1.43147 1.47297 1.51634 2.34630 2.67276 2.76459 2.94367 3.22739 3.48062 3.56104 3.82145 3.90553 3.93901 4.01326 4.07180 4.15085 4.19619 4.26896 4.32260 4.38259 4.61207 4.63223 4.70876 4.78141 4.79832 4.81769 4.82959 4.88659 4.95337 5.07562 5.08344 5.19627 5.21791 5.27779 5.32288 5.39473 5.46072 5.49115 5.54426 5.58446 5.64300 5.68119 6.01361 6.11987 6.69155 7.08723 7.27892 7.65550 8.05539 8.82336 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.003332 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.273019 B = 8402.330785 C = 9476.790068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 C -0.115 4.115 4 C -0.084 4.084 5 C -0.145 4.145 6 C 0.117 3.883 7 N -0.317 5.317 8 C 0.060 3.940 9 C -0.038 4.038 10 C 0.574 3.426 11 O -0.633 6.633 12 N -0.437 5.437 13 C -0.326 4.326 14 H 0.077 0.923 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.953 3.047 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.253 1.253 21 C 0.124 3.876 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.125 4.125 26 N -0.155 5.155 27 N -0.123 5.123 28 C -0.133 4.133 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.217 0.783 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 9.657 4.322 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.102 4.102 5 C -0.166 4.166 6 C 0.026 3.974 7 N -0.096 5.096 8 C -0.093 4.093 9 C -0.176 4.176 10 C 0.363 3.637 11 O -0.521 6.521 12 N -0.154 5.154 13 C -0.454 4.454 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.530 5.530 17 Si 0.779 3.221 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.177 1.177 21 C 0.020 3.980 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.164 4.164 26 N -0.027 5.027 27 N -0.102 5.102 28 C -0.154 4.154 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.234 0.766 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.119 9.131 4.137 11.744 hybrid contribution 0.159 0.005 -0.730 0.747 sum -5.960 9.136 3.407 11.428 Atomic orbital electron populations 1.20882 0.88446 1.04146 1.03512 1.20158 0.97928 0.91551 0.97208 1.21600 0.94257 0.98476 0.99039 1.21409 0.94616 0.97447 0.96746 1.21231 1.01287 0.90537 1.03565 1.18129 0.92374 0.81775 1.05108 1.47682 1.05243 1.07486 1.49212 1.23412 0.86035 0.98892 1.00922 1.21200 0.94048 0.90495 1.11856 1.17382 0.85336 0.83699 0.77309 1.90540 1.39031 1.64665 1.57874 1.43199 1.08508 1.04631 1.59015 1.18918 1.06110 1.15382 1.05009 0.90527 1.25824 0.98453 0.95525 0.94688 1.69953 1.40967 1.27565 1.14561 0.85545 0.80073 0.79896 0.76617 1.20577 1.21603 1.17715 1.22134 0.85804 0.94074 0.95962 1.22608 0.99263 0.97062 0.96312 1.22274 0.97979 0.98648 0.96128 1.22007 0.99012 0.96775 0.96791 1.22364 1.00623 0.96443 0.96929 1.75070 0.97852 1.23468 1.06272 1.81896 1.19657 0.83063 1.25565 1.20896 0.91170 1.00071 1.03218 0.89998 0.91680 0.88643 0.81572 0.81278 0.84248 0.76625 0.93218 0.91640 0.94141 0.91715 0.90896 0.90252 0.91215 0.89975 0.92482 0.92208 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.89 16 2 C -0.07 -1.38 5.88 -19.88 -0.12 -1.50 16 3 C -0.12 -1.81 9.70 22.29 0.22 -1.59 16 4 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 5 C -0.15 -3.60 9.47 22.38 0.21 -3.38 16 6 C 0.12 3.80 6.69 38.08 0.25 4.06 16 7 N -0.32 -13.03 3.82 -186.82 -0.71 -13.74 16 8 C 0.06 2.60 10.60 83.83 0.89 3.49 16 9 C -0.04 -1.96 5.42 40.80 0.22 -1.74 16 10 C 0.57 31.57 6.90 86.66 0.60 32.17 16 11 O -0.63 -35.84 16.25 -4.12 -0.07 -35.90 16 12 N -0.44 -22.87 2.46 -610.61 -1.51 -24.38 16 13 C -0.33 -17.25 5.96 84.07 0.50 -16.75 16 14 H 0.08 4.03 7.11 -2.91 -0.02 4.01 16 15 C 0.06 3.22 3.23 84.94 0.27 3.49 16 16 N -0.89 -51.07 11.14 21.67 0.24 -50.83 16 17 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 21 C 0.12 5.55 3.25 46.19 0.15 5.70 16 22 C -0.11 -4.63 6.39 32.01 0.20 -4.43 16 23 C -0.11 -3.34 6.82 31.67 0.22 -3.13 16 24 C -0.11 -3.10 6.80 31.32 0.21 -2.88 16 25 C -0.13 -4.63 6.43 31.32 0.20 -4.43 16 26 N -0.15 -8.11 8.03 -49.99 -0.40 -8.51 16 27 N -0.12 -5.93 13.13 37.02 0.49 -5.45 16 28 C -0.13 -3.87 9.33 22.38 0.21 -3.66 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.00 8.09 -2.38 -0.02 0.98 16 31 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 32 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.14 3.15 6.84 -2.91 -0.02 3.13 16 35 H 0.22 7.75 7.16 -2.91 -0.02 7.73 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.07 3.11 7.00 -2.38 -0.02 3.10 16 38 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.06 2.89 7.02 -2.39 -0.02 2.87 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 2.29 6.87 -2.39 -0.02 2.27 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.12 3.82 7.74 -2.91 -0.02 3.80 16 Total: -1.00 -72.98 375.94 6.24 -66.74 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 1.00 Total: 22.23 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.18 Total: 3.32 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -1.89 Total: -102.91 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.07 Total: -35.90 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.98 6.24 -66.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125120610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.844 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds