Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28905 * 124.84195 * 2 1 4 4 C 1.31891 * 117.18994 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.84798 * 179.97438 * 4 3 2 6 6 C 1.34337 * 114.30269 * 0.02562 * 4 3 2 7 7 N 1.39865 * 126.06656 * 179.97438 * 6 4 3 8 8 C 1.34777 * 119.99870 * 179.97438 * 7 6 4 9 9 O 1.21601 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99906 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00240 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.46947 * 90.00071 * 11 10 8 13 13 H 1.08007 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00191 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99987 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47127 * 90.00200 * 16 14 12 18 18 H 1.48504 * 109.47039 * 209.99863 * 16 14 12 19 19 H 1.48501 * 109.47209 * 330.00003 * 16 14 12 20 20 C 1.46499 * 119.99966 * 180.02562 * 10 8 7 21 21 C 1.53001 * 109.47147 * 89.99871 * 20 10 8 22 22 C 1.53005 * 109.47315 * 179.97438 * 21 20 10 23 23 N 1.46894 * 109.47508 * 180.02562 * 22 21 20 24 24 C 1.46900 * 111.00248 * 169.99845 * 23 22 21 25 25 C 1.46897 * 111.00100 * 293.95721 * 23 22 21 26 26 S 1.70956 * 124.84368 * 180.28014 * 2 1 3 27 27 H 1.09006 * 109.47203 * 89.99925 * 1 2 3 28 28 H 1.09004 * 109.46765 * 209.99365 * 1 2 3 29 29 H 1.08998 * 109.47168 * 329.99587 * 1 2 3 30 30 H 1.08995 * 109.47893 * 270.00545 * 5 4 3 31 31 H 1.08998 * 109.47271 * 30.00796 * 5 4 3 32 32 H 1.09003 * 109.46918 * 150.00263 * 5 4 3 33 33 H 0.96995 * 120.00058 * 359.72174 * 7 6 4 34 34 H 1.08996 * 109.47264 * 210.00132 * 11 10 8 35 35 H 1.08994 * 109.46914 * 330.00267 * 11 10 8 36 36 H 0.97004 * 120.00113 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47388 * 209.99697 * 20 10 8 38 38 H 1.09000 * 109.47462 * 330.00354 * 20 10 8 39 39 H 1.08996 * 109.47663 * 299.99793 * 21 20 10 40 40 H 1.09003 * 109.47271 * 60.00482 * 21 20 10 41 41 H 1.09003 * 109.47218 * 300.00361 * 22 21 20 42 42 H 1.08997 * 109.46936 * 59.99811 * 22 21 20 43 43 H 1.09000 * 109.46835 * 60.00380 * 24 23 22 44 44 H 1.09002 * 109.46802 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47088 * 300.00163 * 24 23 22 46 46 H 1.09007 * 109.47554 * 59.99929 * 25 23 22 47 47 H 1.09000 * 109.47101 * 179.97438 * 25 23 22 48 48 H 1.08994 * 109.47133 * 299.99860 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2434 1.0580 0.0000 4 6 3.5506 0.8823 0.0005 5 6 4.5293 2.0283 0.0000 6 6 3.9355 -0.4047 0.0004 7 7 5.2546 -0.8696 0.0004 8 6 5.5022 -2.1945 0.0009 9 8 4.5786 -2.9856 0.0008 10 7 6.7733 -2.6425 0.0003 11 6 7.8859 -1.6895 -0.0002 12 6 8.2680 -1.3627 1.4204 13 1 7.7351 -1.8190 2.2416 14 6 9.2972 -0.4805 1.6720 15 7 9.9459 0.0755 0.6721 16 14 9.7704 -0.0749 3.4329 17 1 10.8070 -1.0305 3.8996 18 1 10.3082 1.3080 3.4950 19 1 8.5724 -0.1798 4.3041 20 6 7.0423 -4.0826 0.0002 21 6 7.1353 -4.5839 -1.4423 22 6 7.4170 -6.0879 -1.4424 23 7 7.5069 -6.5691 -2.8274 24 6 8.0077 -7.9494 -2.8737 25 6 6.2106 -6.4563 -3.5091 26 16 2.4837 -1.4030 -0.0069 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.7656 2.3040 -1.0277 31 1 4.0885 2.8829 0.5132 32 1 5.4419 1.7269 0.5143 33 1 5.9913 -0.2386 -0.0036 34 1 8.7406 -2.1290 -0.5144 35 1 7.5827 -0.7772 -0.5139 36 1 10.6703 0.6959 0.8490 37 1 7.9841 -4.2763 0.5136 38 1 6.2344 -4.6032 0.5144 39 1 6.1936 -4.3904 -1.9558 40 1 7.9433 -4.0634 -1.9565 41 1 8.3589 -6.2812 -0.9291 42 1 6.6094 -6.6087 -0.9281 43 1 7.3304 -8.6003 -2.3208 44 1 8.0640 -8.2808 -3.9105 45 1 8.9997 -7.9912 -2.4240 46 1 5.8962 -5.4126 -3.5216 47 1 6.3056 -6.8189 -4.5326 48 1 5.4683 -7.0531 -2.9793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268170460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 14.009703 kcal Electronic energy + Delta-G solvation = -27824.144918 eV Core-core repulsion = 24041.002693 eV Total energy + Delta-G solvation = -3783.142225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19366 -39.24924 -37.69933 -35.62283 -34.77240 -32.98497 -32.14214 -31.24767 -28.95588 -27.66472 -27.55413 -26.90453 -25.38594 -23.19121 -22.73634 -22.37256 -20.76075 -20.03297 -19.49401 -17.70853 -16.74392 -16.65289 -16.31142 -15.55957 -15.49196 -15.36249 -14.90659 -14.66828 -14.58828 -14.35577 -13.88009 -13.63612 -13.16227 -13.14406 -12.96345 -12.67735 -12.44142 -12.42713 -12.26412 -11.95235 -11.90786 -11.83818 -11.78065 -11.50373 -11.45219 -11.28305 -11.00714 -10.92467 -10.86814 -10.63517 -10.35231 -10.21243 -9.92575 -9.88253 -9.04122 -8.70184 -8.62692 -8.38452 -8.03362 -7.44118 -6.31497 -4.41110 1.13331 1.50552 2.18735 3.02052 3.09740 3.15704 3.23842 3.27877 3.67346 3.95922 4.21083 4.42810 4.51471 5.01691 5.04743 5.11164 5.23410 5.23972 5.33901 5.39947 5.49796 5.50681 5.54880 5.59303 5.63198 5.69779 5.76070 5.82684 5.83265 5.90614 5.94636 5.97164 6.07811 6.18764 6.35593 6.44621 6.50451 6.60468 6.76984 6.93005 6.99368 7.03206 7.08189 7.50311 7.62760 7.86972 8.14941 8.27124 8.66643 8.90960 9.28861 10.74531 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006355 B = 0.004685 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4405.211176 B = 5975.358924 C = 9725.423992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.042 4.042 3 N -0.447 5.447 4 C -0.013 4.013 5 C -0.071 4.071 6 C 0.045 3.955 7 N -0.635 5.635 8 C 0.700 3.300 9 O -0.591 6.591 10 N -0.599 5.599 11 C 0.237 3.763 12 C -0.546 4.546 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.139 3.861 21 C -0.131 4.131 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.022 3.978 26 S 0.227 5.773 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.426 0.574 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 -6.853 -4.929 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.321 4.321 3 N -0.162 5.162 4 C -0.149 4.149 5 C -0.130 4.130 6 C -0.176 4.176 7 N -0.284 5.284 8 C 0.401 3.599 9 O -0.472 6.472 10 N -0.331 5.331 11 C 0.117 3.883 12 C -0.585 4.585 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.725 3.275 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.015 3.985 21 C -0.170 4.170 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 S 0.477 5.523 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.269 0.731 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.212 -7.598 -5.228 13.760 hybrid contribution 1.033 0.877 1.383 1.936 sum -9.179 -6.721 -3.845 12.009 Atomic orbital electron populations 1.20215 0.86013 1.03268 1.02929 1.26989 1.01756 0.94105 1.09215 1.66045 1.03399 1.32258 1.14530 1.19881 0.90755 0.92392 1.11826 1.20197 0.95752 0.94686 1.02403 1.23338 0.90299 0.95765 1.08230 1.42294 1.04425 1.07650 1.74034 1.15849 0.84417 0.81387 0.78201 1.90763 1.43072 1.53667 1.59717 1.47323 1.04336 1.07596 1.73825 1.19435 0.84092 0.87015 0.97737 1.21487 1.17869 1.27046 0.92088 0.91922 1.24938 0.95618 0.95359 0.97646 1.69915 1.22244 1.29426 1.30909 0.86495 0.78935 0.77824 0.84284 1.20381 1.20923 1.19751 1.21163 1.02005 0.79604 0.95734 1.21981 1.02619 0.94340 0.98053 1.22064 1.00924 0.95714 0.88202 1.61962 1.27308 1.21354 1.16550 1.22369 1.00016 0.88307 1.01635 1.22424 0.89375 1.02363 0.98438 1.84712 0.92401 1.06002 1.69222 0.90571 0.90810 0.90186 0.91316 0.90843 0.91015 0.73085 0.93647 0.95314 0.92284 0.89946 0.90851 0.91787 0.90822 0.90568 0.94750 0.95883 0.91614 0.91332 0.90897 0.91762 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.46 36.00 0.38 -0.31 16 2 C -0.04 -0.64 7.38 -13.51 -0.10 -0.74 16 3 N -0.45 -7.67 10.53 -7.91 -0.08 -7.75 16 4 C -0.01 -0.23 6.77 -83.94 -0.57 -0.80 16 5 C -0.07 -1.08 10.06 36.01 0.36 -0.72 16 6 C 0.04 0.82 7.18 -15.25 -0.11 0.71 16 7 N -0.63 -12.28 5.27 -14.96 -0.08 -12.36 16 8 C 0.70 14.29 8.25 -86.92 -0.72 13.58 16 9 O -0.59 -12.46 13.55 5.28 0.07 -12.39 16 10 N -0.60 -11.90 2.46 -180.80 -0.44 -12.34 16 11 C 0.24 5.26 4.93 -5.19 -0.03 5.24 16 12 C -0.55 -13.45 9.38 -34.45 -0.32 -13.77 16 13 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -23.23 13.29 55.43 0.74 -22.49 16 16 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.14 2.38 5.41 -4.04 -0.02 2.36 16 21 C -0.13 -1.99 5.46 -26.73 -0.15 -2.13 16 22 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 23 N -0.55 -6.86 5.02 -251.26 -1.26 -8.12 16 24 C 0.03 0.25 9.57 60.06 0.57 0.83 16 25 C 0.02 0.26 9.32 60.06 0.56 0.82 16 26 S 0.23 3.74 20.42 -107.50 -2.20 1.55 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.11 7.22 -51.93 -0.37 0.73 16 33 H 0.43 8.24 5.35 -40.82 -0.22 8.02 16 34 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.03 0.66 6.36 -51.93 -0.33 0.33 16 36 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 38 H 0.07 1.26 7.42 -51.93 -0.39 0.88 16 39 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 42 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 47 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 48 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -28.53 403.30 -10.31 -38.83 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.86 Total: 6.67 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.25 Total: 7.43 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -1.13 Total: -63.06 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.20 Total: 1.55 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.53 -10.31 -38.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268170460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.842 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds