Wall clock time and date at job start Sat Apr 11 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28905 * 124.84195 * 2 1 4 4 C 1.31891 * 117.18994 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.84798 * 179.97438 * 4 3 2 6 6 C 1.34337 * 114.30269 * 0.02562 * 4 3 2 7 7 N 1.39865 * 126.06656 * 179.97438 * 6 4 3 8 8 C 1.34777 * 119.99870 * 179.97438 * 7 6 4 9 9 O 1.21601 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99906 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00240 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.46947 * 90.00071 * 11 10 8 13 13 H 1.08007 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00191 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99987 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47127 * 90.00200 * 16 14 12 18 18 H 1.48504 * 109.47039 * 209.99863 * 16 14 12 19 19 H 1.48501 * 109.47209 * 330.00003 * 16 14 12 20 20 C 1.46499 * 119.99966 * 180.02562 * 10 8 7 21 21 C 1.53001 * 109.47147 * 89.99871 * 20 10 8 22 22 C 1.53005 * 109.47315 * 179.97438 * 21 20 10 23 23 N 1.46894 * 109.47508 * 180.02562 * 22 21 20 24 24 C 1.46900 * 111.00248 * 169.99845 * 23 22 21 25 25 C 1.46897 * 111.00100 * 293.95721 * 23 22 21 26 26 S 1.70956 * 124.84368 * 180.28014 * 2 1 3 27 27 H 1.09006 * 109.47203 * 89.99925 * 1 2 3 28 28 H 1.09004 * 109.46765 * 209.99365 * 1 2 3 29 29 H 1.08998 * 109.47168 * 329.99587 * 1 2 3 30 30 H 1.08995 * 109.47893 * 270.00545 * 5 4 3 31 31 H 1.08998 * 109.47271 * 30.00796 * 5 4 3 32 32 H 1.09003 * 109.46918 * 150.00263 * 5 4 3 33 33 H 0.96995 * 120.00058 * 359.72174 * 7 6 4 34 34 H 1.08996 * 109.47264 * 210.00132 * 11 10 8 35 35 H 1.08994 * 109.46914 * 330.00267 * 11 10 8 36 36 H 0.97004 * 120.00113 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47388 * 209.99697 * 20 10 8 38 38 H 1.09000 * 109.47462 * 330.00354 * 20 10 8 39 39 H 1.08996 * 109.47663 * 299.99793 * 21 20 10 40 40 H 1.09003 * 109.47271 * 60.00482 * 21 20 10 41 41 H 1.09003 * 109.47218 * 300.00361 * 22 21 20 42 42 H 1.08997 * 109.46936 * 59.99811 * 22 21 20 43 43 H 1.09000 * 109.46835 * 60.00380 * 24 23 22 44 44 H 1.09002 * 109.46802 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47088 * 300.00163 * 24 23 22 46 46 H 1.09007 * 109.47554 * 59.99929 * 25 23 22 47 47 H 1.09000 * 109.47101 * 179.97438 * 25 23 22 48 48 H 1.08994 * 109.47133 * 299.99860 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2434 1.0580 0.0000 4 6 3.5506 0.8823 0.0005 5 6 4.5293 2.0283 0.0000 6 6 3.9355 -0.4047 0.0004 7 7 5.2546 -0.8696 0.0004 8 6 5.5022 -2.1945 0.0009 9 8 4.5786 -2.9856 0.0008 10 7 6.7733 -2.6425 0.0003 11 6 7.8859 -1.6895 -0.0002 12 6 8.2680 -1.3627 1.4204 13 1 7.7351 -1.8190 2.2416 14 6 9.2972 -0.4805 1.6720 15 7 9.9459 0.0755 0.6721 16 14 9.7704 -0.0749 3.4329 17 1 10.8070 -1.0305 3.8996 18 1 10.3082 1.3080 3.4950 19 1 8.5724 -0.1798 4.3041 20 6 7.0423 -4.0826 0.0002 21 6 7.1353 -4.5839 -1.4423 22 6 7.4170 -6.0879 -1.4424 23 7 7.5069 -6.5691 -2.8274 24 6 8.0077 -7.9494 -2.8737 25 6 6.2106 -6.4563 -3.5091 26 16 2.4837 -1.4030 -0.0069 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.7656 2.3040 -1.0277 31 1 4.0885 2.8829 0.5132 32 1 5.4419 1.7269 0.5143 33 1 5.9913 -0.2386 -0.0036 34 1 8.7406 -2.1290 -0.5144 35 1 7.5827 -0.7772 -0.5139 36 1 10.6703 0.6959 0.8490 37 1 7.9841 -4.2763 0.5136 38 1 6.2344 -4.6032 0.5144 39 1 6.1936 -4.3904 -1.9558 40 1 7.9433 -4.0634 -1.9565 41 1 8.3589 -6.2812 -0.9291 42 1 6.6094 -6.6087 -0.9281 43 1 7.3304 -8.6003 -2.3208 44 1 8.0640 -8.2808 -3.9105 45 1 8.9997 -7.9912 -2.4240 46 1 5.8962 -5.4126 -3.5216 47 1 6.3056 -6.8189 -4.5326 48 1 5.4683 -7.0531 -2.9793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268170460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:43 Heat of formation + Delta-G solvation = -2.865736 kcal Electronic energy + Delta-G solvation = -27824.876692 eV Core-core repulsion = 24041.002693 eV Total energy + Delta-G solvation = -3783.873999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69365 -40.61148 -38.73673 -37.13177 -36.26932 -34.77498 -33.43236 -32.54141 -30.05229 -29.34500 -28.50473 -28.20590 -26.66266 -25.01885 -23.91850 -23.56019 -21.86904 -21.50151 -20.87601 -19.25935 -18.58086 -18.05102 -17.76002 -16.84439 -16.72476 -16.59055 -16.42858 -16.08880 -15.84614 -15.53651 -15.07699 -14.87565 -14.63050 -14.45355 -14.18250 -14.14772 -13.67131 -13.50702 -13.44565 -13.27739 -13.03267 -12.99182 -12.95074 -12.92623 -12.69420 -12.58405 -12.44696 -12.39972 -12.24447 -12.02580 -12.01123 -11.75937 -11.54578 -11.45106 -10.65312 -10.36303 -9.99143 -9.60414 -9.32117 -8.84786 -8.24577 -6.40515 -0.18245 0.20089 0.88277 1.39097 1.42660 1.50366 1.62667 1.68594 2.15005 2.37087 2.83353 3.05825 3.07831 3.30511 3.92414 4.03185 4.09700 4.17183 4.21801 4.38549 4.41874 4.48988 4.59675 4.61113 4.63906 4.65966 4.70314 4.71795 4.77083 4.79452 4.80511 4.94671 4.98616 5.01623 5.06917 5.10456 5.12199 5.16726 5.27822 5.43890 5.48393 5.67282 5.90832 5.96730 6.04974 6.11890 6.56017 6.79818 6.85084 7.28410 7.36708 8.80023 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006355 B = 0.004685 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4405.211176 B = 5975.358924 C = 9725.423992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.019 4.019 3 N -0.470 5.470 4 C -0.009 4.009 5 C -0.070 4.070 6 C 0.004 3.996 7 N -0.636 5.636 8 C 0.695 3.305 9 O -0.602 6.602 10 N -0.602 5.602 11 C 0.253 3.747 12 C -0.551 4.551 13 H 0.051 0.949 14 C 0.030 3.970 15 N -0.913 5.913 16 Si 0.953 3.047 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.276 1.276 20 C 0.139 3.861 21 C -0.115 4.115 22 C 0.066 3.934 23 N -0.565 5.565 24 C 0.025 3.975 25 C 0.024 3.976 26 S 0.218 5.782 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.423 0.577 34 H 0.032 0.968 35 H 0.022 0.978 36 H 0.270 0.730 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -7.258 -4.752 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.298 4.298 3 N -0.186 5.186 4 C -0.145 4.145 5 C -0.129 4.129 6 C -0.215 4.215 7 N -0.285 5.285 8 C 0.397 3.603 9 O -0.484 6.484 10 N -0.334 5.334 11 C 0.132 3.868 12 C -0.589 4.589 13 H 0.069 0.931 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.779 3.221 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.201 1.201 20 C 0.015 3.985 21 C -0.154 4.154 22 C -0.062 4.062 23 N -0.289 5.289 24 C -0.123 4.123 25 C -0.124 4.124 26 S 0.469 5.531 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.265 0.735 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.355 -8.020 -5.057 14.793 hybrid contribution 1.242 1.028 1.296 2.069 sum -10.112 -6.992 -3.761 12.857 Atomic orbital electron populations 1.20489 0.82538 1.04904 1.04780 1.27828 1.03564 0.92833 1.05558 1.66166 1.03230 1.32798 1.16415 1.20248 0.91444 0.92644 1.10135 1.20242 0.95074 0.94421 1.03204 1.23532 0.90257 0.96660 1.11062 1.42172 1.04928 1.07096 1.74344 1.15956 0.84338 0.81774 0.78278 1.90742 1.43203 1.54094 1.60390 1.47324 1.03734 1.08310 1.74005 1.19075 0.84227 0.87111 0.96351 1.21610 1.17717 1.26887 0.92715 0.93087 1.25549 0.95624 0.95285 1.00688 1.69990 1.22726 1.29988 1.32413 0.85633 0.78383 0.77718 0.80404 1.19913 1.20497 1.20111 1.21289 1.01961 0.78199 0.97038 1.21784 1.01340 0.96015 0.96256 1.21958 1.01425 0.93824 0.89035 1.61950 1.27863 1.23115 1.15980 1.22424 1.00233 0.86899 1.02708 1.22414 0.89139 1.01516 0.99373 1.84638 0.92126 1.06932 1.69365 0.88449 0.88592 0.89074 0.90153 0.89675 0.91777 0.73513 0.94967 0.96023 0.92122 0.89764 0.90862 0.93029 0.92225 0.89781 0.94363 0.95221 0.90325 0.90861 0.92471 0.90133 0.95398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.46 71.24 0.75 -0.47 16 2 C -0.02 -0.55 7.38 88.54 0.65 0.11 16 3 N -0.47 -15.55 10.53 -178.94 -1.88 -17.44 16 4 C -0.01 -0.33 6.77 41.66 0.28 -0.05 16 5 C -0.07 -2.11 10.06 71.24 0.72 -1.40 16 6 C 0.00 0.15 7.18 82.52 0.59 0.74 16 7 N -0.64 -25.28 5.27 -319.51 -1.68 -26.97 16 8 C 0.70 29.07 8.25 179.06 1.48 30.55 16 9 O -0.60 -25.79 13.55 -4.03 -0.05 -25.85 16 10 N -0.60 -24.55 2.46 -844.20 -2.07 -26.63 16 11 C 0.25 11.56 4.93 85.63 0.42 11.98 16 12 C -0.55 -27.50 9.38 25.60 0.24 -27.26 16 13 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 14 C 0.03 1.52 5.46 84.65 0.46 1.98 16 15 N -0.91 -48.07 13.29 21.44 0.28 -47.78 16 16 Si 0.95 40.79 29.54 68.60 2.03 42.82 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 C 0.14 4.82 5.41 86.38 0.47 5.29 16 21 C -0.11 -3.55 5.46 30.60 0.17 -3.38 16 22 C 0.07 1.67 4.96 86.31 0.43 2.10 16 23 N -0.56 -13.57 5.02 -948.86 -4.76 -18.33 16 24 C 0.03 0.46 9.57 127.69 1.22 1.68 16 25 C 0.02 0.53 9.32 127.69 1.19 1.72 16 26 S 0.22 7.10 20.42 -56.49 -1.15 5.94 16 27 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.01 7.22 -2.39 -0.02 1.99 16 33 H 0.42 16.97 5.35 -92.71 -0.50 16.47 16 34 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 35 H 0.02 1.03 6.36 -2.39 -0.02 1.01 16 36 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 37 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 38 H 0.07 2.55 7.42 -2.39 -0.02 2.53 16 39 H 0.05 1.72 6.55 -2.39 -0.02 1.70 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 42 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 43 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 45 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 46 H 0.06 1.43 6.47 -2.38 -0.02 1.42 16 47 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 48 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -60.34 403.30 0.22 -60.11 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.46 Total: 30.52 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 9.07 Total: 23.60 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -10.12 Total: -137.14 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 7.10 SS G_CDS: -1.15 Total: 5.94 kcal Total: -60.34 0.22 -60.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268170460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.247 kcal (2) G-P(sol) polarization free energy of solvation -60.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds