Wall clock time and date at job start Sat Apr 11 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38276 * 126.32463 * 2 1 4 4 C 1.46974 * 126.43727 * 0.02651 * 3 2 1 5 5 C 1.35041 * 119.99966 * 179.70730 * 4 3 2 6 6 C 1.41829 * 120.00212 * 180.02562 * 5 4 3 7 7 O 1.21733 * 119.99518 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00232 * 359.97438 * 8 6 5 10 10 C 1.50693 * 109.47193 * 269.99704 * 9 8 6 11 11 H 1.08002 * 120.00419 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00395 * 179.97438 * 10 9 8 13 13 N 1.31525 * 119.99562 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00542 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47007 * 60.00230 * 14 12 10 16 16 H 1.48494 * 109.47562 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47139 * 300.00487 * 14 12 10 18 18 C 1.46504 * 119.99509 * 179.97438 * 8 6 5 19 19 C 1.50707 * 109.46520 * 90.00714 * 18 8 6 20 20 C 1.38227 * 119.62024 * 94.97709 * 19 18 8 21 21 C 1.38627 * 119.15702 * 179.78495 * 20 19 18 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61172 * 274.99461 * 19 18 8 25 25 C 1.41433 * 107.12251 * 179.76170 * 3 2 1 26 26 N 1.30442 * 108.03453 * 0.24226 * 25 3 2 27 27 N 1.34403 * 126.31169 * 180.18534 * 2 1 3 28 28 C 1.46501 * 125.74602 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46968 * 89.99257 * 1 2 3 30 30 H 1.08994 * 109.47225 * 209.99754 * 1 2 3 31 31 H 1.09005 * 109.46521 * 329.99619 * 1 2 3 32 32 H 1.07997 * 119.99996 * 359.70974 * 4 3 2 33 33 H 1.08010 * 119.99941 * 0.02562 * 5 4 3 34 34 H 1.09003 * 109.47401 * 30.00062 * 9 8 6 35 35 H 1.09003 * 109.47285 * 149.99777 * 9 8 6 36 36 H 0.96998 * 119.99878 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.47601 * 330.00291 * 18 8 6 38 38 H 1.08997 * 109.47191 * 209.99824 * 18 8 6 39 39 H 1.07998 * 120.41916 * 359.97438 * 20 19 18 40 40 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 41 41 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 42 42 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 43 43 H 1.08001 * 125.98547 * 180.26712 * 25 3 2 44 44 H 1.08998 * 109.46993 * 270.27161 * 28 27 2 45 45 H 1.09000 * 109.47186 * 30.27223 * 28 27 2 46 46 H 1.09004 * 109.46916 * 150.27425 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1141 0.0000 4 6 1.8906 2.5178 0.0005 5 6 2.8074 3.5092 0.0065 6 6 2.3872 4.8638 0.0075 7 8 1.1999 5.1327 0.0027 8 7 3.3023 5.8532 0.0129 9 6 4.7311 5.5296 0.0182 10 6 5.2152 5.4163 1.4407 11 1 4.5273 5.5696 2.2592 12 6 6.5361 5.1159 1.6976 13 7 7.3737 4.9287 0.7010 14 14 7.1364 4.9762 3.4610 15 1 6.3825 3.9026 4.1569 16 1 8.5846 4.6480 3.4664 17 1 6.9193 6.2674 4.1615 18 6 2.8681 7.2525 0.0134 19 6 2.7137 7.7298 1.4346 20 6 3.7580 8.3949 2.0492 21 6 3.6039 8.8337 3.3551 22 6 2.4035 8.5773 4.0003 23 6 1.4040 7.9068 3.3214 24 7 1.5840 7.5078 2.0773 25 6 3.6618 0.6489 0.0056 26 7 3.6352 -0.6553 0.0035 27 7 2.3029 -1.0830 -0.0035 28 6 1.8516 -2.4768 -0.0075 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 0.8373 2.7563 -0.0037 33 1 3.8609 3.2706 0.0104 34 1 4.8909 4.5822 -0.4966 35 1 5.2842 6.3181 -0.4921 36 1 8.3031 4.7177 0.8817 37 1 1.9126 7.3366 -0.5041 38 1 3.6125 7.8641 -0.4963 39 1 4.6811 8.5731 1.5177 40 1 4.4013 9.3593 3.8594 41 1 2.2500 8.9015 5.0190 42 1 0.4647 7.7068 3.8154 43 1 4.5485 1.2655 0.0111 44 1 1.7355 -2.8240 1.0192 45 1 0.8952 -2.5475 -0.5254 46 1 2.5886 -3.0958 -0.5192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270187150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:47 Heat of formation + Delta-G solvation = 99.130344 kcal Electronic energy + Delta-G solvation = -29032.159590 eV Core-core repulsion = 25117.264522 eV Total energy + Delta-G solvation = -3914.895068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10446 -39.81578 -38.75763 -35.07790 -34.11378 -33.07878 -32.68190 -31.92192 -31.41896 -30.73752 -27.67701 -27.08719 -26.75484 -25.68809 -23.24818 -22.98926 -22.54640 -21.50841 -20.31745 -19.22078 -17.69713 -16.69133 -16.63649 -16.24341 -16.16624 -15.68835 -15.59502 -15.22728 -14.97484 -14.46326 -14.23905 -13.87316 -13.71943 -13.39279 -13.35995 -13.01785 -12.87770 -12.68408 -12.58992 -12.49976 -12.44803 -12.23663 -11.88824 -11.72910 -11.43947 -11.24656 -11.18284 -10.91069 -10.64213 -10.37244 -10.09449 -9.88914 -9.71640 -9.36529 -9.23620 -8.99652 -8.89276 -8.56485 -8.39530 -7.72504 -7.41482 -6.13190 -4.18452 1.36406 1.59081 1.81575 2.17524 2.49177 3.25978 3.27532 3.31298 3.35727 3.98527 4.34723 4.40190 4.44690 4.56542 4.59784 4.84691 4.91750 4.95363 5.15196 5.20061 5.23605 5.24656 5.27463 5.34689 5.45299 5.51186 5.60481 5.68391 5.69594 5.87406 5.97882 6.01377 6.03069 6.23932 6.24454 6.37939 6.61499 6.67917 6.74316 6.79788 6.90127 6.99588 7.12143 7.19500 7.27930 7.64835 7.80188 7.82910 8.12553 8.44178 8.58856 8.88201 9.20662 9.48956 10.93184 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.003727 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.674828 B = 7511.612622 C = 9119.650462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.097 3.903 3 C -0.215 4.215 4 C -0.001 4.001 5 C -0.201 4.201 6 C 0.552 3.448 7 O -0.564 6.564 8 N -0.591 5.591 9 C 0.237 3.763 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.892 5.892 14 Si 0.888 3.112 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.171 3.829 19 C 0.126 3.874 20 C -0.133 4.133 21 C -0.085 4.085 22 C -0.183 4.183 23 C 0.086 3.914 24 N -0.460 5.460 25 C 0.081 3.919 26 N -0.305 5.305 27 N -0.372 5.372 28 C 0.101 3.899 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.194 0.806 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 -4.971 -0.349 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 C -0.226 4.226 4 C -0.022 4.022 5 C -0.222 4.222 6 C 0.345 3.655 7 O -0.446 6.446 8 N -0.321 5.321 9 C 0.117 3.883 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.531 5.531 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.047 3.953 19 C -0.013 4.013 20 C -0.153 4.153 21 C -0.111 4.111 22 C -0.203 4.203 23 C -0.071 4.071 24 N -0.169 5.169 25 C -0.106 4.106 26 N -0.124 5.124 27 N -0.153 5.153 28 C -0.041 4.041 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.163 0.837 43 H 0.210 0.790 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.926 -6.564 -0.857 12.775 hybrid contribution 1.116 0.964 1.858 2.372 sum -9.810 -5.600 1.001 11.340 Atomic orbital electron populations 1.20491 0.86967 1.04121 1.03509 1.21571 0.94366 0.87082 1.00261 1.19249 0.92025 0.93017 1.18312 1.21423 0.99195 0.88542 0.93072 1.22111 1.01408 0.92630 1.06058 1.17039 0.85417 0.86350 0.76741 1.90731 1.16757 1.85215 1.51947 1.48079 1.09073 1.03815 1.71143 1.19496 0.73866 0.97456 0.97488 1.21425 0.94402 1.48264 0.92252 0.92414 1.24862 0.96605 0.95113 0.96921 1.69906 1.04665 1.47860 1.30678 0.86704 0.77633 0.78767 0.85313 1.20225 1.21216 1.20245 1.20070 1.01301 0.83582 0.90374 1.21684 0.88934 0.93062 0.97633 1.21994 0.99631 0.98041 0.95658 1.21492 0.96953 0.97922 0.94739 1.22019 0.95259 1.02142 1.00887 1.22636 0.98610 0.94923 0.90958 1.67576 1.23950 1.16469 1.08882 1.24292 0.98182 0.91411 0.96678 1.77152 0.95657 1.13800 1.25819 1.48226 1.04258 1.05885 1.56893 1.21822 1.00898 0.78101 1.03272 0.89902 0.91146 0.89032 0.85622 0.84617 0.94003 0.94705 0.92588 0.89352 0.89622 0.84598 0.85530 0.85744 0.83676 0.78969 0.90836 0.89630 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.70 36.01 0.35 -0.48 16 2 C 0.10 1.29 7.02 -81.45 -0.57 0.71 16 3 C -0.21 -3.47 6.08 -105.13 -0.64 -4.11 16 4 C 0.00 -0.02 9.33 -37.18 -0.35 -0.36 16 5 C -0.20 -4.02 8.59 -39.35 -0.34 -4.35 16 6 C 0.55 12.12 7.45 -14.89 -0.11 12.01 16 7 O -0.56 -13.21 15.68 5.16 0.08 -13.13 16 8 N -0.59 -12.68 2.44 -179.79 -0.44 -13.12 16 9 C 0.24 5.50 4.89 -5.20 -0.03 5.47 16 10 C -0.52 -13.35 9.23 -34.44 -0.32 -13.67 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.07 1.76 5.46 -17.81 -0.10 1.66 16 13 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 14 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 C 0.17 3.29 5.76 -5.19 -0.03 3.26 16 19 C 0.13 2.46 6.36 -82.58 -0.53 1.94 16 20 C -0.13 -2.39 9.57 -39.44 -0.38 -2.77 16 21 C -0.08 -1.36 10.18 -39.28 -0.40 -1.76 16 22 C -0.18 -2.76 10.11 -39.44 -0.40 -3.16 16 23 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 24 N -0.46 -9.19 10.27 -9.47 -0.10 -9.29 16 25 C 0.08 1.37 11.39 -16.93 -0.19 1.17 16 26 N -0.30 -5.01 12.49 30.89 0.39 -4.63 16 27 N -0.37 -4.93 3.98 -63.24 -0.25 -5.18 16 28 C 0.10 0.80 11.06 59.85 0.66 1.46 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.47 7.72 -51.93 -0.40 0.07 16 31 H 0.09 0.85 7.61 -51.93 -0.40 0.45 16 32 H 0.13 2.12 7.02 -52.49 -0.37 1.75 16 33 H 0.14 2.81 4.96 -52.48 -0.26 2.55 16 34 H 0.04 1.01 6.08 -51.93 -0.32 0.69 16 35 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.09 1.70 7.42 -51.93 -0.39 1.32 16 38 H 0.09 1.43 7.79 -51.93 -0.40 1.03 16 39 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.19 3.18 7.31 -52.49 -0.38 2.80 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.45 7.64 -51.93 -0.40 0.05 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -33.51 396.62 -8.41 -41.92 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.23 Total: 6.72 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.56 Total: -1.74 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.33 Total: -55.54 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.51 -8.41 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270187150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.054 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds