Wall clock time and date at job start Sat Apr 11 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38276 * 126.32463 * 2 1 4 4 C 1.46974 * 126.43727 * 0.02651 * 3 2 1 5 5 C 1.35041 * 119.99966 * 179.70730 * 4 3 2 6 6 C 1.41829 * 120.00212 * 180.02562 * 5 4 3 7 7 O 1.21733 * 119.99518 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00232 * 359.97438 * 8 6 5 10 10 C 1.50693 * 109.47193 * 269.99704 * 9 8 6 11 11 H 1.08002 * 120.00419 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00395 * 179.97438 * 10 9 8 13 13 N 1.31525 * 119.99562 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00542 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47007 * 60.00230 * 14 12 10 16 16 H 1.48494 * 109.47562 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47139 * 300.00487 * 14 12 10 18 18 C 1.46504 * 119.99509 * 179.97438 * 8 6 5 19 19 C 1.50707 * 109.46520 * 90.00714 * 18 8 6 20 20 C 1.38227 * 119.62024 * 94.97709 * 19 18 8 21 21 C 1.38627 * 119.15702 * 179.78495 * 20 19 18 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61172 * 274.99461 * 19 18 8 25 25 C 1.41433 * 107.12251 * 179.76170 * 3 2 1 26 26 N 1.30442 * 108.03453 * 0.24226 * 25 3 2 27 27 N 1.34403 * 126.31169 * 180.18534 * 2 1 3 28 28 C 1.46501 * 125.74602 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46968 * 89.99257 * 1 2 3 30 30 H 1.08994 * 109.47225 * 209.99754 * 1 2 3 31 31 H 1.09005 * 109.46521 * 329.99619 * 1 2 3 32 32 H 1.07997 * 119.99996 * 359.70974 * 4 3 2 33 33 H 1.08010 * 119.99941 * 0.02562 * 5 4 3 34 34 H 1.09003 * 109.47401 * 30.00062 * 9 8 6 35 35 H 1.09003 * 109.47285 * 149.99777 * 9 8 6 36 36 H 0.96998 * 119.99878 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.47601 * 330.00291 * 18 8 6 38 38 H 1.08997 * 109.47191 * 209.99824 * 18 8 6 39 39 H 1.07998 * 120.41916 * 359.97438 * 20 19 18 40 40 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 41 41 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 42 42 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 43 43 H 1.08001 * 125.98547 * 180.26712 * 25 3 2 44 44 H 1.08998 * 109.46993 * 270.27161 * 28 27 2 45 45 H 1.09000 * 109.47186 * 30.27223 * 28 27 2 46 46 H 1.09004 * 109.46916 * 150.27425 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1141 0.0000 4 6 1.8906 2.5178 0.0005 5 6 2.8074 3.5092 0.0065 6 6 2.3872 4.8638 0.0075 7 8 1.1999 5.1327 0.0027 8 7 3.3023 5.8532 0.0129 9 6 4.7311 5.5296 0.0182 10 6 5.2152 5.4163 1.4407 11 1 4.5273 5.5696 2.2592 12 6 6.5361 5.1159 1.6976 13 7 7.3737 4.9287 0.7010 14 14 7.1364 4.9762 3.4610 15 1 6.3825 3.9026 4.1569 16 1 8.5846 4.6480 3.4664 17 1 6.9193 6.2674 4.1615 18 6 2.8681 7.2525 0.0134 19 6 2.7137 7.7298 1.4346 20 6 3.7580 8.3949 2.0492 21 6 3.6039 8.8337 3.3551 22 6 2.4035 8.5773 4.0003 23 6 1.4040 7.9068 3.3214 24 7 1.5840 7.5078 2.0773 25 6 3.6618 0.6489 0.0056 26 7 3.6352 -0.6553 0.0035 27 7 2.3029 -1.0830 -0.0035 28 6 1.8516 -2.4768 -0.0075 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 0.8373 2.7563 -0.0037 33 1 3.8609 3.2706 0.0104 34 1 4.8909 4.5822 -0.4966 35 1 5.2842 6.3181 -0.4921 36 1 8.3031 4.7177 0.8817 37 1 1.9126 7.3366 -0.5041 38 1 3.6125 7.8641 -0.4963 39 1 4.6811 8.5731 1.5177 40 1 4.4013 9.3593 3.8594 41 1 2.2500 8.9015 5.0190 42 1 0.4647 7.7068 3.8154 43 1 4.5485 1.2655 0.0111 44 1 1.7355 -2.8240 1.0192 45 1 0.8952 -2.5475 -0.5254 46 1 2.5886 -3.0958 -0.5192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270187150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:46 Heat of formation + Delta-G solvation = 79.437898 kcal Electronic energy + Delta-G solvation = -29033.013518 eV Core-core repulsion = 25117.264522 eV Total energy + Delta-G solvation = -3915.748997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25658 -41.25357 -40.31512 -36.77843 -35.39042 -34.60350 -34.14180 -33.29421 -32.78301 -31.89971 -29.39583 -28.45883 -27.66801 -27.03018 -24.98887 -24.31257 -24.09071 -22.84650 -21.53865 -20.41609 -19.28074 -18.55848 -18.17086 -17.66134 -17.42036 -16.92350 -16.73756 -16.65902 -16.46282 -16.25060 -15.45436 -15.33143 -15.05113 -14.69464 -14.28741 -14.24345 -14.12627 -14.02366 -13.92627 -13.85440 -13.45883 -13.42753 -13.30323 -13.09282 -12.90395 -12.78344 -12.72547 -12.58207 -12.41260 -11.96886 -11.69546 -11.58383 -11.23496 -10.77735 -10.66457 -10.49671 -10.32068 -10.27396 -9.81837 -9.39865 -8.78251 -8.14274 -6.25044 0.03474 0.27471 0.51069 0.92527 1.37885 1.40848 1.47047 1.54741 1.91031 2.35812 2.51857 2.80629 3.12360 3.16287 3.49784 3.52790 3.65949 3.91287 4.01907 4.07610 4.11130 4.20582 4.32140 4.36112 4.38993 4.40104 4.54859 4.59989 4.64820 4.68079 4.72453 4.79157 4.87269 4.95591 4.97011 4.99538 5.05593 5.26666 5.31150 5.37733 5.43217 5.51827 5.66441 5.74041 5.91042 5.96399 6.04272 6.14382 6.60740 6.65342 6.90329 7.24267 7.40790 7.55401 8.90651 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.003727 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.674828 B = 7511.612622 C = 9119.650462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.126 3.874 3 C -0.259 4.259 4 C 0.043 3.957 5 C -0.247 4.247 6 C 0.550 3.450 7 O -0.588 6.588 8 N -0.594 5.594 9 C 0.253 3.747 10 C -0.518 4.518 11 H 0.040 0.960 12 C 0.030 3.970 13 N -0.917 5.917 14 Si 0.938 3.062 15 H -0.284 1.284 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.168 3.832 19 C 0.104 3.896 20 C -0.148 4.148 21 C -0.089 4.089 22 C -0.170 4.170 23 C 0.073 3.927 24 N -0.496 5.496 25 C 0.067 3.933 26 N -0.333 5.333 27 N -0.365 5.365 28 C 0.086 3.914 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.179 0.821 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -6.269 1.317 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.007 4.007 3 C -0.270 4.270 4 C 0.021 3.979 5 C -0.268 4.268 6 C 0.344 3.656 7 O -0.472 6.472 8 N -0.323 5.323 9 C 0.133 3.867 10 C -0.557 4.557 11 H 0.058 0.942 12 C -0.170 4.170 13 N -0.557 5.557 14 Si 0.765 3.235 15 H -0.210 1.210 16 H -0.207 1.207 17 H -0.192 1.192 18 C 0.045 3.955 19 C -0.035 4.035 20 C -0.168 4.168 21 C -0.115 4.115 22 C -0.190 4.190 23 C -0.085 4.085 24 N -0.205 5.205 25 C -0.119 4.119 26 N -0.153 5.153 27 N -0.145 5.145 28 C -0.053 4.053 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.189 0.811 43 H 0.196 0.804 44 H 0.109 0.891 45 H 0.141 0.859 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.663 -7.870 0.805 14.931 hybrid contribution 1.513 1.157 1.360 2.340 sum -11.150 -6.714 2.165 13.194 Atomic orbital electron populations 1.20745 0.83279 1.05788 1.05419 1.22216 0.96259 0.86000 0.96185 1.19300 0.92439 0.93221 1.22064 1.21542 0.98966 0.88883 0.88462 1.21852 1.01092 0.92450 1.11407 1.17287 0.85169 0.86985 0.76139 1.90689 1.17274 1.85613 1.53641 1.48030 1.08181 1.04897 1.71205 1.19152 0.74910 0.96430 0.96250 1.21400 0.94100 1.47683 0.92517 0.94196 1.25416 0.96753 0.95021 0.99834 1.69985 1.04859 1.48758 1.32102 0.85910 0.77189 0.78705 0.81735 1.21015 1.20655 1.19222 1.20193 1.01367 0.82675 0.91308 1.21615 0.89720 0.94477 0.97651 1.22076 0.99199 0.98629 0.96920 1.21901 0.98227 0.97414 0.93941 1.22432 0.93998 1.00232 1.02341 1.23188 1.00287 0.94752 0.90239 1.67522 1.24546 1.17808 1.10673 1.24211 0.98478 0.91886 0.97299 1.77081 0.98026 1.13347 1.26833 1.48707 1.03147 1.07853 1.54761 1.22351 1.02690 0.75153 1.05136 0.87627 0.87749 0.89140 0.84725 0.86257 0.95251 0.95508 0.92528 0.90025 0.87969 0.84841 0.82717 0.81682 0.81149 0.80374 0.89060 0.85928 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 9.70 71.24 0.69 -0.62 16 2 C 0.13 3.06 7.02 42.18 0.30 3.35 16 3 C -0.26 -8.40 6.08 -20.19 -0.12 -8.52 16 4 C 0.04 1.53 9.33 23.82 0.22 1.76 16 5 C -0.25 -10.46 8.59 22.42 0.19 -10.26 16 6 C 0.55 25.38 7.45 85.13 0.63 26.02 16 7 O -0.59 -28.54 15.68 -4.45 -0.07 -28.61 16 8 N -0.59 -26.86 2.44 -840.93 -2.05 -28.91 16 9 C 0.25 12.39 4.89 85.63 0.42 12.81 16 10 C -0.52 -27.25 9.23 25.60 0.24 -27.02 16 11 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 12 C 0.03 1.58 5.46 84.65 0.46 2.04 16 13 N -0.92 -50.57 13.29 21.45 0.28 -50.28 16 14 Si 0.94 42.91 29.54 68.60 2.03 44.93 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 C 0.17 6.79 5.76 85.63 0.49 7.28 16 19 C 0.10 4.15 6.36 42.55 0.27 4.42 16 20 C -0.15 -5.34 9.57 22.36 0.21 -5.13 16 21 C -0.09 -2.69 10.18 22.47 0.23 -2.46 16 22 C -0.17 -4.71 10.11 22.36 0.23 -4.48 16 23 C 0.07 2.35 11.18 84.67 0.95 3.30 16 24 N -0.50 -20.05 10.27 -183.88 -1.89 -21.94 16 25 C 0.07 2.36 11.39 85.69 0.98 3.33 16 26 N -0.33 -10.92 12.49 -56.18 -0.70 -11.62 16 27 N -0.37 -8.86 3.98 -354.00 -1.41 -10.27 16 28 C 0.09 1.04 11.06 127.77 1.41 2.46 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.10 0.81 7.72 -2.39 -0.02 0.79 16 31 H 0.09 1.37 7.61 -2.38 -0.02 1.35 16 32 H 0.14 4.52 7.02 -2.91 -0.02 4.50 16 33 H 0.12 5.40 4.96 -2.91 -0.01 5.38 16 34 H 0.03 1.52 6.08 -2.39 -0.01 1.50 16 35 H 0.03 1.34 7.89 -2.39 -0.02 1.33 16 36 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.08 3.33 7.42 -2.39 -0.02 3.31 16 38 H 0.10 3.61 7.79 -2.39 -0.02 3.59 16 39 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.18 6.53 7.31 -2.91 -0.02 6.51 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.12 0.63 7.64 -2.39 -0.02 0.61 16 46 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -75.51 396.62 4.98 -70.53 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.99 Total: 27.88 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.80 Total: 8.29 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -5.77 Total: -123.02 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.07 Total: -28.61 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -75.51 4.98 -70.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270187150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.963 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds