Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99554 * 2 1 4 4 N 1.46506 * 109.46738 * 125.00060 * 3 2 1 5 5 C 1.46501 * 119.99794 * 85.12054 * 4 3 2 6 6 C 1.50695 * 109.47193 * 95.79791 * 5 4 3 7 7 H 1.08004 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99860 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00186 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47092 * 60.00371 * 10 8 6 12 12 H 1.48498 * 109.47396 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47238 * 300.00533 * 10 8 6 14 14 C 1.34771 * 119.99618 * 265.11654 * 4 3 2 15 15 O 1.21590 * 120.00381 * 5.30261 * 14 4 3 16 16 C 1.47522 * 119.99824 * 185.30272 * 14 4 3 17 17 N 1.34416 * 125.76334 * 355.54712 * 16 14 4 18 18 N 1.28752 * 109.57970 * 180.02562 * 17 16 14 19 19 N 1.40212 * 108.38311 * 0.02562 * 18 17 16 20 20 C 1.40226 * 126.61259 * 180.02562 * 19 18 17 21 21 C 1.38845 * 120.06847 * 221.88193 * 20 19 18 22 22 C 1.38098 * 119.93412 * 179.97438 * 21 20 19 23 23 C 1.38296 * 120.06669 * 0.02562 * 22 21 20 24 24 C 1.38256 * 120.13163 * 0.02562 * 23 22 21 25 25 C 1.50702 * 119.96547 * 180.02562 * 24 23 22 26 26 C 1.38140 * 120.06761 * 359.74324 * 24 23 22 27 27 C 1.35074 * 106.77407 * 359.73433 * 19 18 17 28 28 C 1.50706 * 126.60432 * 180.28586 * 27 19 18 29 29 H 1.07998 * 120.00424 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00284 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00424 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47210 * 5.00264 * 3 2 1 33 33 H 1.09000 * 109.46975 * 244.99486 * 3 2 1 34 34 H 1.09000 * 109.46812 * 215.79792 * 5 4 3 35 35 H 1.08998 * 109.47224 * 335.79881 * 5 4 3 36 36 H 0.96996 * 119.99891 * 179.97438 * 9 8 6 37 37 H 1.07997 * 120.03500 * 359.97438 * 21 20 19 38 38 H 1.08009 * 119.96748 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.93625 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.47566 * 89.99592 * 25 24 23 41 41 H 1.09003 * 109.46598 * 209.99898 * 25 24 23 42 42 H 1.08994 * 109.47287 * 329.99611 * 25 24 23 43 43 H 1.07998 * 120.03801 * 180.25419 * 26 24 23 44 44 H 1.08997 * 109.47085 * 274.61703 * 28 27 19 45 45 H 1.08996 * 109.46632 * 34.61589 * 28 27 19 46 46 H 1.08998 * 109.46815 * 154.61539 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3226 0.7292 1.0015 6 6 5.3243 1.7950 0.6389 7 1 5.0033 2.8191 0.5177 8 6 6.6509 1.4630 0.4627 9 7 7.0419 0.2161 0.6108 10 14 7.8925 2.7840 0.0125 11 1 7.9203 3.8203 1.0758 12 1 9.2396 2.1731 -0.1191 13 1 7.5047 3.4089 -1.2777 14 6 2.6268 1.9112 2.2918 15 8 1.4924 2.3254 2.4326 16 6 3.6018 2.0426 3.3911 17 7 4.8537 1.5534 3.3935 18 7 5.4296 1.8471 4.5069 19 7 4.5235 2.5693 5.2964 20 6 4.7555 3.0783 6.5822 21 6 3.7725 2.9784 7.5578 22 6 4.0041 3.4802 8.8234 23 6 5.2134 4.0823 9.1194 24 6 6.1937 4.1843 8.1498 25 6 7.5103 4.8406 8.4766 26 6 5.9697 3.6799 6.8834 27 6 3.3863 2.6858 4.5769 28 6 2.1222 3.3878 5.0016 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 4.6073 0.2700 1.9482 35 1 4.3020 -0.0309 0.2206 36 1 7.9751 -0.0175 0.4865 37 1 2.8278 2.5086 7.3271 38 1 3.2400 3.4023 9.5828 39 1 5.3925 4.4737 10.1100 40 1 8.2091 4.0897 8.8453 41 1 7.9171 5.3057 7.5786 42 1 7.3570 5.6012 9.2421 43 1 6.7373 3.7562 6.1275 44 1 1.5050 2.7041 5.5843 45 1 2.3757 4.2563 5.6095 46 1 1.5717 3.7109 4.1180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359384510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = 122.237234 kcal Electronic energy + Delta-G solvation = -29487.022029 eV Core-core repulsion = 25573.128951 eV Total energy + Delta-G solvation = -3913.893078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94721 -39.58696 -38.72070 -35.51421 -34.81547 -33.34448 -32.60804 -32.15839 -31.97375 -29.74986 -27.77339 -27.29048 -27.17250 -25.52397 -23.86355 -23.07362 -22.38427 -21.75923 -20.25908 -19.56215 -18.77468 -17.45426 -16.59219 -16.41775 -16.01356 -15.72096 -15.66174 -14.97661 -14.48706 -14.38289 -14.27653 -14.05669 -13.88800 -13.53065 -13.46996 -13.12163 -12.92336 -12.82801 -12.72382 -12.48410 -12.29407 -12.19518 -11.79051 -11.68042 -11.55629 -11.34338 -11.14080 -10.95854 -10.75776 -10.72499 -10.41030 -10.11345 -9.79053 -9.58037 -9.35295 -9.07379 -8.96380 -8.85626 -8.49316 -8.28329 -7.64463 -5.94159 -3.95611 0.66877 1.04367 1.76601 2.34931 2.47712 2.62144 3.35910 3.39326 3.40079 3.42879 3.93533 4.08250 4.46000 4.50987 4.55233 4.57349 4.81914 4.96931 4.98346 5.02467 5.18935 5.22781 5.36831 5.37371 5.42536 5.43223 5.45370 5.57021 5.59804 5.66777 5.79667 5.88192 5.95569 6.04981 6.09017 6.16663 6.20431 6.24808 6.33761 6.44034 6.52054 6.80567 6.96914 7.05010 7.16899 7.52131 7.72931 7.96376 8.31369 8.33302 8.61085 8.95408 9.07005 9.66611 11.14300 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004132 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.144086 B = 6775.092312 C = 9130.745403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.144 3.856 4 N -0.577 5.577 5 C 0.231 3.769 6 C -0.513 4.513 7 H 0.051 0.949 8 C 0.075 3.925 9 N -0.885 5.885 10 Si 0.887 3.113 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.279 1.279 14 C 0.602 3.398 15 O -0.570 6.570 16 C -0.086 4.086 17 N -0.119 5.119 18 N -0.076 5.076 19 N -0.336 5.336 20 C 0.150 3.850 21 C -0.126 4.126 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.070 4.070 25 C -0.115 4.115 26 C -0.102 4.102 27 C 0.108 3.892 28 C -0.091 4.091 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.136 0.864 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 6.648 15.184 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.305 5.305 5 C 0.112 3.888 6 C -0.553 4.553 7 H 0.069 0.931 8 C -0.128 4.128 9 N -0.524 5.524 10 Si 0.715 3.285 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.204 1.204 14 C 0.389 3.611 15 O -0.452 6.452 16 C -0.223 4.223 17 N 0.008 4.992 18 N -0.054 5.054 19 N -0.116 5.116 20 C 0.058 3.942 21 C -0.146 4.146 22 C -0.117 4.117 23 C -0.137 4.137 24 C -0.071 4.071 25 C -0.172 4.172 26 C -0.122 4.122 27 C -0.026 4.026 28 C -0.150 4.150 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.154 0.846 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.874 6.105 15.076 17.293 hybrid contribution 0.182 0.964 -0.216 1.004 sum -5.692 7.069 14.860 17.412 Atomic orbital electron populations 1.23722 0.95807 1.01306 1.01962 1.23409 0.96114 0.99450 0.98566 1.20475 0.92283 0.95034 0.90129 1.48108 1.17462 1.54608 1.10331 1.19835 0.75674 0.93744 0.99581 1.21184 0.92612 0.94296 1.47182 0.93067 1.24742 0.97812 0.95047 0.95225 1.69896 1.16648 1.16758 1.49104 0.86752 0.80772 0.82226 0.78750 1.20602 1.21235 1.20437 1.16706 0.84968 0.77955 0.81506 1.90636 1.19621 1.52809 1.82093 1.21193 0.94777 1.09511 0.96809 1.75365 1.03732 1.11488 1.08661 1.82324 1.12612 1.12359 0.98068 1.47725 1.11304 1.39936 1.12606 1.17486 0.96303 0.98585 0.81799 1.21115 0.99374 1.01587 0.92532 1.20978 0.97465 0.97699 0.95596 1.21150 0.93316 1.00028 0.99249 1.19820 0.96712 0.97948 0.92612 1.20822 0.93545 1.00244 1.02601 1.21006 0.96266 0.97393 0.97559 1.21822 0.90261 0.98704 0.91795 1.20699 0.90988 0.98889 1.04385 0.88641 0.89027 0.87380 0.90244 0.89475 0.91654 0.95005 0.92888 0.84967 0.84886 0.85371 0.90651 0.91123 0.91189 0.84597 0.89740 0.91085 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.02 0.42 -2.35 16 2 C -0.16 -2.62 9.84 -36.02 -0.35 -2.97 16 3 C 0.14 2.70 5.84 -5.19 -0.03 2.67 16 4 N -0.58 -12.85 2.46 -177.67 -0.44 -13.28 16 5 C 0.23 5.86 4.78 -5.20 -0.02 5.83 16 6 C -0.51 -14.08 7.96 -34.44 -0.27 -14.35 16 7 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 8 C 0.07 2.08 5.46 -17.82 -0.10 1.99 16 9 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 C 0.60 13.33 7.61 -12.48 -0.09 13.24 16 15 O -0.57 -12.31 14.24 5.29 0.08 -12.24 16 16 C -0.09 -1.88 6.62 -83.54 -0.55 -2.43 16 17 N -0.12 -2.88 7.88 32.85 0.26 -2.62 16 18 N -0.08 -1.69 13.64 60.35 0.82 -0.86 16 19 N -0.34 -6.08 3.71 -6.72 -0.02 -6.11 16 20 C 0.15 2.17 6.17 -83.58 -0.52 1.65 16 21 C -0.13 -1.41 8.65 -39.41 -0.34 -1.75 16 22 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 23 C -0.12 -1.02 9.70 -39.55 -0.38 -1.40 16 24 C -0.07 -0.72 5.88 -104.65 -0.62 -1.33 16 25 C -0.12 -0.90 10.01 36.01 0.36 -0.54 16 26 C -0.10 -1.36 9.51 -39.40 -0.37 -1.74 16 27 C 0.11 1.97 6.84 -81.75 -0.56 1.41 16 28 C -0.09 -1.24 8.32 36.01 0.30 -0.94 16 29 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 30 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 33 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 34 H 0.07 1.79 5.62 -51.93 -0.29 1.50 16 35 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.13 1.35 6.77 -52.49 -0.36 0.99 16 38 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 45 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 46 H 0.11 1.67 6.30 -51.93 -0.33 1.34 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -32.57 389.32 -7.57 -40.14 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.30 Total: 1.39 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.54 Total: -4.28 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 1.36 Total: -47.83 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.57 -7.57 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.374 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds