Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99554 * 2 1 4 4 N 1.46506 * 109.46738 * 125.00060 * 3 2 1 5 5 C 1.46501 * 119.99794 * 85.12054 * 4 3 2 6 6 C 1.50695 * 109.47193 * 95.79791 * 5 4 3 7 7 H 1.08004 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99860 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00186 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47092 * 60.00371 * 10 8 6 12 12 H 1.48498 * 109.47396 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47238 * 300.00533 * 10 8 6 14 14 C 1.34771 * 119.99618 * 265.11654 * 4 3 2 15 15 O 1.21590 * 120.00381 * 5.30261 * 14 4 3 16 16 C 1.47522 * 119.99824 * 185.30272 * 14 4 3 17 17 N 1.34416 * 125.76334 * 355.54712 * 16 14 4 18 18 N 1.28752 * 109.57970 * 180.02562 * 17 16 14 19 19 N 1.40212 * 108.38311 * 0.02562 * 18 17 16 20 20 C 1.40226 * 126.61259 * 180.02562 * 19 18 17 21 21 C 1.38845 * 120.06847 * 221.88193 * 20 19 18 22 22 C 1.38098 * 119.93412 * 179.97438 * 21 20 19 23 23 C 1.38296 * 120.06669 * 0.02562 * 22 21 20 24 24 C 1.38256 * 120.13163 * 0.02562 * 23 22 21 25 25 C 1.50702 * 119.96547 * 180.02562 * 24 23 22 26 26 C 1.38140 * 120.06761 * 359.74324 * 24 23 22 27 27 C 1.35074 * 106.77407 * 359.73433 * 19 18 17 28 28 C 1.50706 * 126.60432 * 180.28586 * 27 19 18 29 29 H 1.07998 * 120.00424 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00284 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00424 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47210 * 5.00264 * 3 2 1 33 33 H 1.09000 * 109.46975 * 244.99486 * 3 2 1 34 34 H 1.09000 * 109.46812 * 215.79792 * 5 4 3 35 35 H 1.08998 * 109.47224 * 335.79881 * 5 4 3 36 36 H 0.96996 * 119.99891 * 179.97438 * 9 8 6 37 37 H 1.07997 * 120.03500 * 359.97438 * 21 20 19 38 38 H 1.08009 * 119.96748 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.93625 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.47566 * 89.99592 * 25 24 23 41 41 H 1.09003 * 109.46598 * 209.99898 * 25 24 23 42 42 H 1.08994 * 109.47287 * 329.99611 * 25 24 23 43 43 H 1.07998 * 120.03801 * 180.25419 * 26 24 23 44 44 H 1.08997 * 109.47085 * 274.61703 * 28 27 19 45 45 H 1.08996 * 109.46632 * 34.61589 * 28 27 19 46 46 H 1.08998 * 109.46815 * 154.61539 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3226 0.7292 1.0015 6 6 5.3243 1.7950 0.6389 7 1 5.0033 2.8191 0.5177 8 6 6.6509 1.4630 0.4627 9 7 7.0419 0.2161 0.6108 10 14 7.8925 2.7840 0.0125 11 1 7.9203 3.8203 1.0758 12 1 9.2396 2.1731 -0.1191 13 1 7.5047 3.4089 -1.2777 14 6 2.6268 1.9112 2.2918 15 8 1.4924 2.3254 2.4326 16 6 3.6018 2.0426 3.3911 17 7 4.8537 1.5534 3.3935 18 7 5.4296 1.8471 4.5069 19 7 4.5235 2.5693 5.2964 20 6 4.7555 3.0783 6.5822 21 6 3.7725 2.9784 7.5578 22 6 4.0041 3.4802 8.8234 23 6 5.2134 4.0823 9.1194 24 6 6.1937 4.1843 8.1498 25 6 7.5103 4.8406 8.4766 26 6 5.9697 3.6799 6.8834 27 6 3.3863 2.6858 4.5769 28 6 2.1222 3.3878 5.0016 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 4.6073 0.2700 1.9482 35 1 4.3020 -0.0309 0.2206 36 1 7.9751 -0.0175 0.4865 37 1 2.8278 2.5086 7.3271 38 1 3.2400 3.4023 9.5828 39 1 5.3925 4.4737 10.1100 40 1 8.2091 4.0897 8.8453 41 1 7.9171 5.3057 7.5786 42 1 7.3570 5.6012 9.2421 43 1 6.7373 3.7562 6.1275 44 1 1.5050 2.7041 5.5843 45 1 2.3757 4.2563 5.6095 46 1 1.5717 3.7109 4.1180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359384510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = 103.973765 kcal Electronic energy + Delta-G solvation = -29487.813993 eV Core-core repulsion = 25573.128951 eV Total energy + Delta-G solvation = -3914.685042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.42280 -40.69894 -40.18935 -37.17438 -36.05102 -35.06434 -33.85069 -33.45500 -33.41408 -30.89074 -29.27129 -29.05859 -27.96049 -27.03760 -25.17696 -24.90170 -23.76076 -22.86148 -21.42328 -20.93459 -20.31255 -18.87331 -18.43856 -17.55609 -17.33034 -17.31263 -17.06387 -16.44433 -16.09346 -15.85491 -15.51100 -15.18144 -14.93028 -14.78579 -14.70016 -14.36653 -14.24643 -14.14521 -13.99621 -13.89411 -13.54122 -13.25974 -13.11785 -13.05416 -12.86596 -12.75910 -12.59595 -12.52871 -12.28448 -12.18083 -12.03321 -11.69558 -11.65202 -11.45584 -10.99919 -10.47732 -10.28606 -10.23987 -9.91775 -9.62046 -9.42558 -8.09761 -6.17194 -0.41318 0.22601 0.53101 0.81386 1.07072 1.32552 1.34602 1.36497 1.42983 2.25915 2.41898 2.45701 2.58638 3.23318 3.28694 3.47409 3.64550 3.71542 3.79094 4.00831 4.04798 4.07365 4.22306 4.24033 4.26924 4.46383 4.51802 4.55499 4.65861 4.72873 4.76764 4.80247 4.82036 4.84001 4.92721 5.05368 5.08679 5.20374 5.26842 5.29606 5.44428 5.46666 5.63457 5.71359 5.76904 5.82271 5.90346 5.96363 6.19243 6.50197 6.85018 7.04571 7.28401 7.48675 8.97850 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004132 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.144086 B = 6775.092312 C = 9130.745403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.185 4.185 3 C 0.143 3.857 4 N -0.585 5.585 5 C 0.252 3.748 6 C -0.513 4.513 7 H 0.038 0.962 8 C 0.032 3.968 9 N -0.914 5.914 10 Si 0.940 3.060 11 H -0.288 1.288 12 H -0.279 1.279 13 H -0.266 1.266 14 C 0.599 3.401 15 O -0.568 6.568 16 C -0.126 4.126 17 N -0.162 5.162 18 N -0.115 5.115 19 N -0.319 5.319 20 C 0.104 3.896 21 C -0.123 4.123 22 C -0.086 4.086 23 C -0.103 4.103 24 C -0.073 4.073 25 C -0.116 4.116 26 C -0.125 4.125 27 C 0.125 3.875 28 C -0.085 4.085 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.262 0.738 37 H 0.144 0.856 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 8.391 18.377 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.205 4.205 3 C 0.021 3.979 4 N -0.313 5.313 5 C 0.131 3.869 6 C -0.552 4.552 7 H 0.056 0.944 8 C -0.168 4.168 9 N -0.554 5.554 10 Si 0.766 3.234 11 H -0.215 1.215 12 H -0.204 1.204 13 H -0.191 1.191 14 C 0.387 3.613 15 O -0.450 6.450 16 C -0.264 4.264 17 N -0.034 5.034 18 N -0.093 5.093 19 N -0.098 5.098 20 C 0.014 3.986 21 C -0.144 4.144 22 C -0.105 4.105 23 C -0.121 4.121 24 C -0.073 4.073 25 C -0.172 4.172 26 C -0.145 4.145 27 C -0.011 4.011 28 C -0.143 4.143 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.162 0.838 38 H 0.192 0.808 39 H 0.186 0.814 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.739 7.856 18.270 21.340 hybrid contribution 0.666 0.519 -0.953 1.274 sum -7.073 8.375 17.316 20.495 Atomic orbital electron populations 1.23977 0.94815 1.02939 0.97907 1.23213 0.96944 0.98032 1.02274 1.20602 0.91898 0.96619 0.88802 1.48085 1.16934 1.54749 1.11538 1.19336 0.77032 0.92850 0.97718 1.21273 0.93361 0.93942 1.46648 0.94412 1.25373 0.99372 0.96740 0.95338 1.69997 1.16897 1.18243 1.50269 0.85909 0.79091 0.79818 0.78537 1.21453 1.20389 1.19141 1.16822 0.85229 0.77739 0.81558 1.90603 1.19324 1.52881 1.82183 1.21457 0.94646 1.11848 0.98487 1.75304 1.05108 1.12997 1.09996 1.82168 1.14129 1.14342 0.98615 1.47864 1.10350 1.38188 1.13426 1.17980 0.98251 1.01339 0.81018 1.21355 0.98850 1.01432 0.92736 1.21474 0.98359 0.95619 0.95001 1.21657 0.92258 0.97964 1.00194 1.20127 0.98311 0.97330 0.91561 1.20890 0.92430 1.00883 1.03008 1.21003 0.95593 0.99188 0.98705 1.22452 0.91430 0.96905 0.90338 1.20862 0.88779 1.00040 1.04594 0.87722 0.86462 0.88118 0.89604 0.90001 0.93667 0.96561 0.92915 0.83779 0.80796 0.81434 0.90050 0.92138 0.88470 0.87364 0.86832 0.88244 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 14.32 67.78 0.97 -3.36 16 2 C -0.19 -6.26 9.84 25.65 0.25 -6.00 16 3 C 0.14 5.52 5.84 85.63 0.50 6.02 16 4 N -0.58 -27.24 2.46 -834.29 -2.05 -29.28 16 5 C 0.25 13.54 4.78 85.63 0.41 13.95 16 6 C -0.51 -29.54 7.96 25.60 0.20 -29.34 16 7 H 0.04 2.23 7.81 -2.91 -0.02 2.20 16 8 C 0.03 1.84 5.46 84.66 0.46 2.30 16 9 N -0.91 -55.29 13.29 21.45 0.28 -55.01 16 10 Si 0.94 46.54 29.54 68.60 2.03 48.57 16 11 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 14 C 0.60 27.42 7.61 86.69 0.66 28.08 16 15 O -0.57 -24.59 14.24 -4.00 -0.06 -24.65 16 16 C -0.13 -5.74 6.62 40.82 0.27 -5.47 16 17 N -0.16 -8.35 7.88 -49.98 -0.39 -8.75 16 18 N -0.12 -5.46 13.64 37.02 0.50 -4.95 16 19 N -0.32 -11.91 3.71 -175.17 -0.65 -12.56 16 20 C 0.10 2.97 6.17 38.08 0.24 3.21 16 21 C -0.12 -2.43 8.65 22.38 0.19 -2.24 16 22 C -0.09 -1.09 10.04 22.25 0.22 -0.86 16 23 C -0.10 -1.28 9.70 22.29 0.22 -1.06 16 24 C -0.07 -1.33 5.88 -19.88 -0.12 -1.45 16 25 C -0.12 -1.55 10.01 71.24 0.71 -0.84 16 26 C -0.12 -3.38 9.51 22.38 0.21 -3.16 16 27 C 0.13 4.60 6.84 41.68 0.28 4.88 16 28 C -0.08 -2.14 8.32 71.24 0.59 -1.55 16 29 H 0.10 2.68 7.84 -2.91 -0.02 2.66 16 30 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.10 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.09 3.15 7.00 -2.39 -0.02 3.14 16 33 H 0.08 3.16 8.11 -2.39 -0.02 3.14 16 34 H 0.05 2.66 5.62 -2.39 -0.01 2.65 16 35 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.14 2.44 6.77 -2.91 -0.02 2.42 16 38 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 0.93 8.09 -2.39 -0.02 0.92 16 42 H 0.10 0.78 8.08 -2.39 -0.02 0.76 16 43 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.11 2.25 7.72 -2.39 -0.02 2.24 16 45 H 0.10 1.96 7.60 -2.39 -0.02 1.94 16 46 H 0.10 2.85 6.30 -2.39 -0.02 2.84 16 Total: -1.00 -76.51 389.32 6.94 -69.57 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.99 Total: 13.95 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.28 Total: 3.11 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -2.30 Total: -110.55 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -76.51 6.94 -69.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.543 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds