Wall clock time and date at job start Sat Apr 11 2020 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.93132 * 2 1 4 4 C 1.38106 * 120.06925 * 180.02562 * 3 2 1 5 5 C 1.38880 * 119.93122 * 359.97438 * 4 3 2 6 6 N 1.39918 * 120.07124 * 179.97438 * 5 4 3 7 7 C 1.46504 * 120.00160 * 353.16925 * 6 5 4 8 8 C 1.50704 * 109.47189 * 87.24405 * 7 6 5 9 9 H 1.08002 * 119.99945 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00078 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00318 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99912 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47468 * 90.00065 * 12 10 8 14 14 H 1.48498 * 109.46923 * 210.00178 * 12 10 8 15 15 H 1.48502 * 109.47175 * 329.99704 * 12 10 8 16 16 C 1.34777 * 120.00327 * 173.16905 * 6 5 4 17 17 O 1.21290 * 119.99449 * 4.90897 * 16 6 5 18 18 C 1.50693 * 120.00381 * 184.91210 * 16 6 5 19 19 H 1.09000 * 109.45034 * 328.85761 * 18 16 6 20 20 C 1.53143 * 109.45090 * 208.92656 * 18 16 6 21 21 C 1.53460 * 109.30557 * 170.53573 * 20 18 16 22 22 C 1.50800 * 108.13151 * 48.71804 * 21 20 18 23 23 N 1.29840 * 128.52118 * 164.04213 * 22 21 20 24 24 N 1.28913 * 109.47829 * 180.14194 * 23 22 21 25 25 C 1.30841 * 109.73797 * 359.97438 * 24 23 22 26 26 N 1.34692 * 107.06904 * 359.96269 * 25 24 23 27 27 C 1.46259 * 128.84072 * 180.11050 * 26 25 24 28 28 C 1.38871 * 119.85417 * 0.02562 * 5 4 3 29 29 C 1.38111 * 119.93310 * 359.97438 * 28 5 4 30 30 H 1.08996 * 109.47263 * 89.99927 * 1 2 3 31 31 H 1.08998 * 109.47654 * 210.00821 * 1 2 3 32 32 H 1.09004 * 109.47134 * 330.00225 * 1 2 3 33 33 H 1.08003 * 119.96128 * 0.27223 * 3 2 1 34 34 H 1.08001 * 120.03442 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47076 * 207.24260 * 7 6 5 36 36 H 1.08997 * 109.46885 * 327.24962 * 7 6 5 37 37 H 0.96993 * 120.00273 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.49826 * 290.48237 * 20 18 16 39 39 H 1.08997 * 109.50039 * 50.58469 * 20 18 16 40 40 H 1.08997 * 109.72813 * 289.05949 * 21 20 18 41 41 H 1.09004 * 109.73455 * 168.37958 * 21 20 18 42 42 H 1.08001 * 126.46084 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.59654 * 43.15973 * 27 26 25 44 44 H 1.09005 * 109.59650 * 282.70616 * 27 26 25 45 45 H 1.08007 * 120.03116 * 179.97438 * 28 5 4 46 46 H 1.08003 * 119.96428 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0005 5 6 4.2739 -0.0002 -0.0005 6 7 5.6731 -0.0002 -0.0016 7 6 6.4056 1.2594 -0.1536 8 6 6.5987 1.8947 1.1992 9 1 6.2146 1.4085 2.0839 10 6 7.2656 3.0965 1.3076 11 7 7.7338 3.6883 0.2305 12 14 7.5056 3.8835 2.9847 13 1 8.7807 3.4064 3.5776 14 1 7.5507 5.3604 2.8365 15 1 6.3760 3.5096 3.8732 16 6 6.3471 -1.1591 0.1372 17 8 5.7439 -2.2108 0.1736 18 6 7.8500 -1.1482 0.2473 19 1 8.2496 -0.3091 -0.3223 20 6 8.4118 -2.4580 -0.3130 21 6 9.9390 -2.3506 -0.4195 22 6 10.4650 -1.8240 0.8921 23 7 11.6832 -1.8429 1.3408 24 7 11.7201 -1.2953 2.5073 25 6 10.5197 -0.9032 2.8496 26 7 9.6940 -1.2266 1.8357 27 6 8.2532 -1.0037 1.7193 28 6 3.5779 -1.2019 -0.0005 29 6 2.1968 -1.1985 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6552 2.1327 0.0044 34 1 4.1164 2.1380 -0.0010 35 1 7.3781 1.0620 -0.6045 36 1 5.8383 1.9345 -0.7943 37 1 8.2027 4.5339 0.3067 38 1 8.1506 -3.2804 0.3530 39 1 7.9902 -2.6416 -1.3012 40 1 10.2044 -1.6651 -1.2242 41 1 10.3642 -3.3344 -0.6181 42 1 10.2432 -0.4120 3.7708 43 1 8.0091 -0.0005 2.0686 44 1 7.7196 -1.7417 2.3183 45 1 4.1162 -2.1383 -0.0010 46 1 1.6551 -2.1328 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366593779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:10 Heat of formation + Delta-G solvation = 79.020015 kcal Electronic energy + Delta-G solvation = -30123.711883 eV Core-core repulsion = 26207.944765 eV Total energy + Delta-G solvation = -3915.767117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.07722 -40.62936 -38.50423 -36.62422 -35.69711 -33.48852 -33.06155 -31.86224 -30.64749 -30.45198 -28.98910 -27.80232 -26.33988 -24.71750 -23.74936 -23.18192 -22.09455 -21.96027 -21.19761 -19.85799 -18.78976 -17.29856 -17.09467 -16.93999 -16.40824 -16.08643 -15.30964 -15.04550 -14.75221 -14.49001 -14.44241 -14.33339 -14.16068 -13.80916 -13.53521 -13.43021 -13.20647 -13.00658 -12.65547 -12.28043 -12.07007 -11.97680 -11.84795 -11.77342 -11.45310 -11.35958 -11.23520 -11.15816 -10.98684 -10.78859 -10.65795 -10.43286 -10.26274 -10.16937 -9.88037 -9.28465 -8.97065 -8.96310 -8.78874 -8.46840 -7.30826 -6.47386 -4.58445 1.64388 1.88637 2.05323 2.56721 2.96497 3.03464 3.07702 3.14373 3.15051 3.34440 4.07050 4.25359 4.30992 4.47575 4.56415 4.69782 4.84853 4.89067 5.03401 5.13404 5.20698 5.27111 5.29284 5.47787 5.48377 5.56986 5.58233 5.66703 5.71886 5.77481 5.85956 5.92662 5.97905 6.03023 6.11615 6.13854 6.17493 6.36034 6.40978 6.60040 6.74872 6.82579 6.88817 7.03142 7.04545 7.13347 7.42958 7.64556 7.66077 7.86346 8.39185 8.52094 8.92241 9.10892 10.58424 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.004476 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.142790 B = 6254.181560 C = 8298.302014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.136 4.136 5 C 0.160 3.840 6 N -0.528 5.528 7 C 0.225 3.775 8 C -0.549 4.549 9 H 0.065 0.935 10 C 0.073 3.927 11 N -0.881 5.881 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.526 3.474 17 O -0.535 6.535 18 C -0.117 4.117 19 H 0.118 0.882 20 C -0.108 4.108 21 C -0.032 4.032 22 C 0.175 3.825 23 N -0.298 5.298 24 N -0.308 5.308 25 C 0.159 3.841 26 N -0.461 5.461 27 C 0.113 3.887 28 C -0.175 4.175 29 C -0.109 4.109 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.270 0.730 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.217 0.783 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.179 0.821 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -7.290 -1.175 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.128 4.128 3 C -0.124 4.124 4 C -0.156 4.156 5 C 0.065 3.935 6 N -0.246 5.246 7 C 0.106 3.894 8 C -0.587 4.587 9 H 0.083 0.917 10 C -0.132 4.132 11 N -0.517 5.517 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.195 1.195 16 C 0.315 3.685 17 O -0.415 6.415 18 C -0.139 4.139 19 H 0.136 0.864 20 C -0.147 4.147 21 C -0.071 4.071 22 C -0.093 4.093 23 N -0.139 5.139 24 N -0.148 5.148 25 C -0.129 4.129 26 N -0.150 5.150 27 C -0.010 4.010 28 C -0.194 4.194 29 C -0.127 4.127 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.233 0.767 43 H 0.147 0.853 44 H 0.108 0.892 45 H 0.195 0.805 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.681 -7.854 -1.134 9.214 hybrid contribution -1.284 1.342 1.018 2.118 sum -5.966 -6.512 -0.116 8.832 Atomic orbital electron populations 1.20678 0.92021 1.01996 1.01521 1.19815 0.95511 0.93524 1.03943 1.20756 0.93511 0.97127 1.00973 1.21125 0.94017 0.97799 1.02639 1.18023 0.82430 0.94276 0.98787 1.45998 1.04346 1.09842 1.64434 1.19796 0.92115 0.78823 0.98639 1.21302 1.38269 1.06606 0.92570 0.91714 1.24912 0.94709 0.96488 0.97133 1.69887 1.36041 1.17594 1.28212 0.86564 0.78903 0.79041 0.83609 1.20159 1.20700 1.19482 1.20151 0.89010 0.83043 0.76268 1.90286 1.68201 1.31880 1.51152 1.21604 0.93396 1.01772 0.97091 0.86392 1.21598 0.93470 0.96309 1.03289 1.20229 0.94675 1.02519 0.89715 1.24747 0.88314 1.00709 0.95507 1.73993 1.16347 1.18548 1.04992 1.74431 1.18625 1.14504 1.07240 1.26212 0.86995 1.03739 0.95979 1.46101 1.10459 1.43334 1.15147 1.22061 0.75892 1.06216 0.96793 1.22723 0.94377 1.00141 1.02175 1.20905 0.94014 0.96831 1.00981 0.91974 0.92219 0.92144 0.86462 0.84238 0.93510 0.93378 0.92020 0.90181 0.89347 0.88533 0.88040 0.76693 0.85318 0.89237 0.80507 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.13 -1.85 5.88 -104.59 -0.62 -2.46 16 3 C -0.10 -1.64 9.69 -39.61 -0.38 -2.02 16 4 C -0.14 -2.44 9.09 -39.39 -0.36 -2.80 16 5 C 0.16 2.98 6.49 -83.69 -0.54 2.44 16 6 N -0.53 -9.81 2.68 -114.74 -0.31 -10.12 16 7 C 0.22 4.60 4.31 -5.19 -0.02 4.58 16 8 C -0.55 -12.16 7.47 -34.44 -0.26 -12.42 16 9 H 0.06 1.46 7.69 -52.49 -0.40 1.06 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.88 -21.93 13.29 55.43 0.74 -21.19 16 12 Si 0.89 18.62 29.54 -169.99 -5.02 13.60 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 C 0.53 8.96 6.65 -10.99 -0.07 8.88 16 17 O -0.54 -9.56 12.73 5.55 0.07 -9.49 16 18 C -0.12 -1.73 1.99 -91.54 -0.18 -1.91 16 19 H 0.12 1.87 5.78 -51.93 -0.30 1.57 16 20 C -0.11 -1.32 4.70 -26.42 -0.12 -1.44 16 21 C -0.03 -0.38 6.34 -27.60 -0.17 -0.55 16 22 C 0.18 2.74 7.75 -155.31 -1.20 1.54 16 23 N -0.30 -5.42 12.21 32.76 0.40 -5.02 16 24 N -0.31 -5.59 12.23 29.59 0.36 -5.23 16 25 C 0.16 2.45 12.83 -90.41 -1.16 1.30 16 26 N -0.46 -7.06 3.11 -115.52 -0.36 -7.42 16 27 C 0.11 1.66 6.30 -4.01 -0.03 1.64 16 28 C -0.17 -3.05 9.05 -39.39 -0.36 -3.41 16 29 C -0.11 -1.66 9.69 -39.61 -0.38 -2.04 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.14 2.69 6.21 -52.49 -0.33 2.36 16 35 H 0.05 0.98 5.77 -51.93 -0.30 0.68 16 36 H 0.05 1.06 6.68 -51.93 -0.35 0.72 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 39 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.22 2.52 8.06 -52.49 -0.42 2.09 16 43 H 0.13 2.10 6.33 -51.93 -0.33 1.77 16 44 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 45 H 0.18 3.20 4.53 -56.20 -0.25 2.95 16 46 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -27.87 371.22 -10.16 -38.03 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.03 Total: 9.14 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -5.60 Total: -7.89 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.83 Total: -48.98 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.87 -10.16 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366593779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.045 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds