Wall clock time and date at job start Sat Apr 11 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.93132 * 2 1 4 4 C 1.38106 * 120.06925 * 180.02562 * 3 2 1 5 5 C 1.38880 * 119.93122 * 359.97438 * 4 3 2 6 6 N 1.39918 * 120.07124 * 179.97438 * 5 4 3 7 7 C 1.46504 * 120.00160 * 353.16925 * 6 5 4 8 8 C 1.50704 * 109.47189 * 87.24405 * 7 6 5 9 9 H 1.08002 * 119.99945 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00078 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00318 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99912 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47468 * 90.00065 * 12 10 8 14 14 H 1.48498 * 109.46923 * 210.00178 * 12 10 8 15 15 H 1.48502 * 109.47175 * 329.99704 * 12 10 8 16 16 C 1.34777 * 120.00327 * 173.16905 * 6 5 4 17 17 O 1.21290 * 119.99449 * 4.90897 * 16 6 5 18 18 C 1.50693 * 120.00381 * 184.91210 * 16 6 5 19 19 H 1.09000 * 109.45034 * 328.85761 * 18 16 6 20 20 C 1.53143 * 109.45090 * 208.92656 * 18 16 6 21 21 C 1.53460 * 109.30557 * 170.53573 * 20 18 16 22 22 C 1.50800 * 108.13151 * 48.71804 * 21 20 18 23 23 N 1.29840 * 128.52118 * 164.04213 * 22 21 20 24 24 N 1.28913 * 109.47829 * 180.14194 * 23 22 21 25 25 C 1.30841 * 109.73797 * 359.97438 * 24 23 22 26 26 N 1.34692 * 107.06904 * 359.96269 * 25 24 23 27 27 C 1.46259 * 128.84072 * 180.11050 * 26 25 24 28 28 C 1.38871 * 119.85417 * 0.02562 * 5 4 3 29 29 C 1.38111 * 119.93310 * 359.97438 * 28 5 4 30 30 H 1.08996 * 109.47263 * 89.99927 * 1 2 3 31 31 H 1.08998 * 109.47654 * 210.00821 * 1 2 3 32 32 H 1.09004 * 109.47134 * 330.00225 * 1 2 3 33 33 H 1.08003 * 119.96128 * 0.27223 * 3 2 1 34 34 H 1.08001 * 120.03442 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47076 * 207.24260 * 7 6 5 36 36 H 1.08997 * 109.46885 * 327.24962 * 7 6 5 37 37 H 0.96993 * 120.00273 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.49826 * 290.48237 * 20 18 16 39 39 H 1.08997 * 109.50039 * 50.58469 * 20 18 16 40 40 H 1.08997 * 109.72813 * 289.05949 * 21 20 18 41 41 H 1.09004 * 109.73455 * 168.37958 * 21 20 18 42 42 H 1.08001 * 126.46084 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.59654 * 43.15973 * 27 26 25 44 44 H 1.09005 * 109.59650 * 282.70616 * 27 26 25 45 45 H 1.08007 * 120.03116 * 179.97438 * 28 5 4 46 46 H 1.08003 * 119.96428 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0005 5 6 4.2739 -0.0002 -0.0005 6 7 5.6731 -0.0002 -0.0016 7 6 6.4056 1.2594 -0.1536 8 6 6.5987 1.8947 1.1992 9 1 6.2146 1.4085 2.0839 10 6 7.2656 3.0965 1.3076 11 7 7.7338 3.6883 0.2305 12 14 7.5056 3.8835 2.9847 13 1 8.7807 3.4064 3.5776 14 1 7.5507 5.3604 2.8365 15 1 6.3760 3.5096 3.8732 16 6 6.3471 -1.1591 0.1372 17 8 5.7439 -2.2108 0.1736 18 6 7.8500 -1.1482 0.2473 19 1 8.2496 -0.3091 -0.3223 20 6 8.4118 -2.4580 -0.3130 21 6 9.9390 -2.3506 -0.4195 22 6 10.4650 -1.8240 0.8921 23 7 11.6832 -1.8429 1.3408 24 7 11.7201 -1.2953 2.5073 25 6 10.5197 -0.9032 2.8496 26 7 9.6940 -1.2266 1.8357 27 6 8.2532 -1.0037 1.7193 28 6 3.5779 -1.2019 -0.0005 29 6 2.1968 -1.1985 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6552 2.1327 0.0044 34 1 4.1164 2.1380 -0.0010 35 1 7.3781 1.0620 -0.6045 36 1 5.8383 1.9345 -0.7943 37 1 8.2027 4.5339 0.3067 38 1 8.1506 -3.2804 0.3530 39 1 7.9902 -2.6416 -1.3012 40 1 10.2044 -1.6651 -1.2242 41 1 10.3642 -3.3344 -0.6181 42 1 10.2432 -0.4120 3.7708 43 1 8.0091 -0.0005 2.0686 44 1 7.7196 -1.7417 2.3183 45 1 4.1162 -2.1383 -0.0010 46 1 1.6551 -2.1328 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366593779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:09 Heat of formation + Delta-G solvation = 67.901057 kcal Electronic energy + Delta-G solvation = -30124.194037 eV Core-core repulsion = 26207.944765 eV Total energy + Delta-G solvation = -3916.249272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.31148 -41.99072 -39.75252 -37.83523 -37.15409 -34.76761 -34.63594 -33.11376 -31.85435 -31.73495 -30.17162 -29.44312 -27.51388 -25.87389 -25.36051 -24.37922 -23.37010 -23.24971 -22.43761 -21.09271 -20.07779 -18.80654 -18.49419 -18.32225 -17.81742 -17.34214 -16.63832 -16.44646 -16.21933 -15.78975 -15.68827 -15.51039 -15.24872 -14.99604 -14.80511 -14.57473 -14.43614 -14.33069 -14.22387 -13.56335 -13.36057 -13.19622 -12.99370 -12.95171 -12.86046 -12.73542 -12.64107 -12.48415 -12.23990 -12.17332 -12.00263 -11.89622 -11.79022 -11.42544 -11.13224 -10.75801 -10.67936 -10.23727 -10.20214 -9.76041 -8.68690 -8.26192 -6.42798 0.35955 0.59166 0.85792 1.31219 1.36130 1.42506 1.48180 1.68500 1.81156 1.97878 2.34265 2.99010 3.03366 3.17754 3.22203 3.38376 3.55822 3.76920 3.88148 3.99422 4.11227 4.13407 4.25078 4.29982 4.34059 4.42649 4.47085 4.53019 4.58823 4.65845 4.76768 4.87219 4.92142 4.93668 4.96168 4.99377 5.04627 5.14695 5.19759 5.20925 5.28075 5.47454 5.57741 5.61409 5.75089 5.84110 5.87064 5.90102 6.32204 6.39684 6.69089 7.04984 7.29032 7.66440 8.76508 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.004476 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.142790 B = 6254.181560 C = 8298.302014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.155 4.155 5 C 0.133 3.867 6 N -0.534 5.534 7 C 0.242 3.758 8 C -0.536 4.536 9 H 0.060 0.940 10 C 0.034 3.966 11 N -0.913 5.913 12 Si 0.942 3.058 13 H -0.270 1.270 14 H -0.287 1.287 15 H -0.268 1.268 16 C 0.527 3.473 17 O -0.541 6.541 18 C -0.112 4.112 19 H 0.105 0.895 20 C -0.098 4.098 21 C -0.028 4.028 22 C 0.176 3.824 23 N -0.332 5.332 24 N -0.342 5.342 25 C 0.161 3.839 26 N -0.465 5.465 27 C 0.121 3.879 28 C -0.186 4.186 29 C -0.108 4.108 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.043 0.957 36 H 0.027 0.973 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.247 0.753 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.172 0.828 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -8.482 -0.850 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.175 4.175 5 C 0.038 3.962 6 N -0.252 5.252 7 C 0.122 3.878 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.168 4.168 11 N -0.551 5.551 12 Si 0.767 3.233 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.193 1.193 16 C 0.317 3.683 17 O -0.422 6.422 18 C -0.133 4.133 19 H 0.123 0.877 20 C -0.136 4.136 21 C -0.067 4.067 22 C -0.093 4.093 23 N -0.171 5.171 24 N -0.181 5.181 25 C -0.127 4.127 26 N -0.154 5.154 27 C -0.002 4.002 28 C -0.205 4.205 29 C -0.127 4.127 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.263 0.737 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.189 0.811 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.530 -9.069 -0.801 11.205 hybrid contribution -0.847 1.686 0.896 2.089 sum -7.378 -7.383 0.095 10.438 Atomic orbital electron populations 1.20746 0.88956 1.03402 1.02887 1.20242 0.97680 0.92600 1.01684 1.21052 0.92615 0.98808 1.00150 1.21080 0.95250 0.96781 1.04436 1.18278 0.82458 0.95046 1.00388 1.45928 1.04632 1.09522 1.65166 1.19409 0.91635 0.79389 0.97372 1.21401 1.36847 1.06198 0.93010 0.92229 1.25482 0.94853 0.97096 0.99384 1.69978 1.37457 1.17993 1.29721 0.85786 0.78928 0.77831 0.80714 1.19546 1.21326 1.19288 1.20449 0.89773 0.82447 0.75662 1.90282 1.68645 1.31811 1.51448 1.21571 0.91751 1.02876 0.97139 0.87729 1.21566 0.93543 0.94615 1.03892 1.20414 0.94164 1.03961 0.88129 1.25398 0.87805 0.99712 0.96370 1.73921 1.17740 1.19956 1.05511 1.74354 1.20089 1.15858 1.07814 1.26843 0.86351 1.02773 0.96775 1.46189 1.10561 1.43424 1.15257 1.21940 0.75742 1.05587 0.96889 1.22742 0.95509 0.99266 1.02988 1.21257 0.93262 0.98450 0.99709 0.90478 0.90646 0.91006 0.84417 0.86503 0.93906 0.95527 0.92300 0.89908 0.87950 0.87461 0.85566 0.73681 0.87037 0.87921 0.81129 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.01 71.24 0.71 -1.16 16 2 C -0.12 -3.22 5.88 -19.84 -0.12 -3.33 16 3 C -0.11 -3.24 9.69 22.25 0.22 -3.02 16 4 C -0.16 -5.68 9.09 22.39 0.20 -5.47 16 5 C 0.13 5.00 6.49 38.16 0.25 5.25 16 6 N -0.53 -20.19 2.68 -635.30 -1.70 -21.89 16 7 C 0.24 10.21 4.31 85.63 0.37 10.58 16 8 C -0.54 -24.20 7.47 25.60 0.19 -24.01 16 9 H 0.06 2.72 7.69 -2.91 -0.02 2.70 16 10 C 0.03 1.60 5.46 84.65 0.46 2.06 16 11 N -0.91 -46.48 13.29 21.45 0.28 -46.19 16 12 Si 0.94 38.33 29.54 68.60 2.03 40.36 16 13 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 14 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 16 C 0.53 17.82 6.65 87.65 0.58 18.40 16 17 O -0.54 -18.93 12.73 -3.06 -0.04 -18.97 16 18 C -0.11 -3.24 1.99 -11.39 -0.02 -3.26 16 19 H 0.10 3.34 5.78 -2.39 -0.01 3.33 16 20 C -0.10 -2.21 4.70 30.80 0.14 -2.07 16 21 C -0.03 -0.60 6.34 30.03 0.19 -0.41 16 22 C 0.18 5.34 7.75 138.14 1.07 6.41 16 23 N -0.33 -11.94 12.21 -50.28 -0.61 -12.55 16 24 N -0.34 -12.35 12.23 -60.31 -0.74 -13.09 16 25 C 0.16 4.86 12.83 180.27 2.31 7.17 16 26 N -0.46 -13.87 3.11 -519.41 -1.62 -15.49 16 27 C 0.12 3.48 6.30 86.53 0.55 4.02 16 28 C -0.19 -6.34 9.05 22.39 0.20 -6.14 16 29 C -0.11 -3.07 9.69 22.25 0.22 -2.85 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.07 1.16 8.08 -2.38 -0.02 1.15 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.12 4.74 6.21 -2.91 -0.02 4.72 16 35 H 0.04 1.85 5.77 -2.39 -0.01 1.84 16 36 H 0.03 1.24 6.68 -2.39 -0.02 1.23 16 37 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 38 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 39 H 0.10 2.08 8.11 -2.39 -0.02 2.06 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.25 5.39 8.06 -2.91 -0.02 5.37 16 43 H 0.11 3.63 6.33 -2.39 -0.02 3.61 16 44 H 0.10 2.67 8.12 -2.38 -0.02 2.65 16 45 H 0.17 6.05 4.53 -61.85 -0.28 5.77 16 46 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -60.82 371.22 5.87 -54.94 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.75 Total: 30.72 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 7.53 Total: 2.16 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.39 Total: -109.21 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.04 Total: -18.97 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -60.82 5.87 -54.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366593779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.845 kcal (2) G-P(sol) polarization free energy of solvation -60.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds