Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38304 * 119.96845 * 2 1 4 4 C 1.38254 * 120.13230 * 180.27581 * 3 2 1 5 5 C 1.38144 * 120.06526 * 359.74720 * 4 3 2 6 6 C 1.38803 * 119.93389 * 0.02562 * 5 4 3 7 7 N 1.40227 * 120.06648 * 180.02562 * 6 5 4 8 8 C 1.35068 * 126.61434 * 359.97438 * 7 6 5 9 9 C 1.36617 * 106.79588 * 179.97438 * 8 7 6 10 10 C 1.47517 * 125.76846 * 179.97438 * 9 8 7 11 11 O 1.21601 * 119.99559 * 7.32915 * 10 9 8 12 12 N 1.34773 * 120.00144 * 187.33491 * 10 9 8 13 13 C 1.46918 * 120.63149 * 7.33373 * 12 10 9 14 14 C 1.53190 * 108.77714 * 126.37080 * 13 12 10 15 15 C 1.53040 * 109.31149 * 54.63596 * 14 13 12 16 16 C 1.53040 * 109.53833 * 298.63523 * 15 14 13 17 17 H 1.08997 * 109.50229 * 301.41523 * 16 15 14 18 18 C 1.50704 * 109.49831 * 181.34794 * 16 15 14 19 19 H 1.08003 * 119.99937 * 0.02562 * 18 16 15 20 20 C 1.37879 * 119.99990 * 180.02562 * 18 16 15 21 21 N 1.31506 * 120.00215 * 180.02562 * 20 18 16 22 22 Si 1.86799 * 119.99960 * 0.02562 * 20 18 16 23 23 H 1.48498 * 109.47409 * 89.99970 * 22 20 18 24 24 H 1.48496 * 109.47274 * 210.00062 * 22 20 18 25 25 H 1.48503 * 109.47269 * 329.99720 * 22 20 18 26 26 C 1.46931 * 120.62778 * 187.06033 * 12 10 9 27 27 N 1.34409 * 108.46868 * 359.97438 * 9 8 7 28 28 N 1.28757 * 109.57867 * 359.75089 * 27 9 8 29 29 C 1.38091 * 119.96840 * 179.77091 * 2 1 3 30 30 H 1.09000 * 109.47145 * 270.23245 * 1 2 3 31 31 H 1.09006 * 109.47060 * 30.23216 * 1 2 3 32 32 H 1.08997 * 109.47127 * 150.22967 * 1 2 3 33 33 H 1.08002 * 119.93073 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.96671 * 179.76850 * 4 3 2 35 35 H 1.07996 * 120.03101 * 179.97438 * 5 4 3 36 36 H 1.08003 * 126.60477 * 359.96234 * 8 7 6 37 37 H 1.09005 * 109.58950 * 246.15764 * 13 12 10 38 38 H 1.09004 * 109.58766 * 6.58481 * 13 12 10 39 39 H 1.09004 * 109.50157 * 174.58518 * 14 13 12 40 40 H 1.09004 * 109.49839 * 294.68413 * 14 13 12 41 41 H 1.08998 * 109.45881 * 58.65964 * 15 14 13 42 42 H 1.09005 * 109.46125 * 178.61852 * 15 14 13 43 43 H 0.96998 * 120.00352 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.59060 * 353.41431 * 26 12 10 45 45 H 1.08998 * 109.58438 * 113.84075 * 26 12 10 46 46 H 1.08006 * 120.03328 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5804 1.2021 -0.0058 5 6 4.2759 0.0085 -0.0063 6 6 3.5853 -1.1955 -0.0015 7 7 4.2885 -2.4087 -0.0014 8 6 5.6305 -2.5621 -0.0062 9 6 5.8742 -3.9063 -0.0035 10 6 7.2058 -4.5411 -0.0074 11 8 8.2046 -3.8595 0.1208 12 7 7.3153 -5.8765 -0.1532 13 6 6.1362 -6.6942 -0.4688 14 6 6.4376 -7.5340 -1.7140 15 6 7.7179 -8.3400 -1.4833 16 6 8.8898 -7.3836 -1.2505 17 1 9.0007 -6.7272 -2.1136 18 6 10.1560 -8.1774 -1.0562 19 1 10.1283 -9.2564 -1.0953 20 6 11.3498 -7.5262 -0.8287 21 7 12.4548 -8.2189 -0.6597 22 14 11.3976 -5.6601 -0.7605 23 1 11.1716 -5.2098 0.6364 24 1 12.7239 -5.1815 -1.2263 25 1 10.3353 -5.1053 -1.6374 26 6 8.6172 -6.5413 -0.0055 27 7 4.6958 -4.5527 0.0033 28 7 3.7341 -3.6966 0.0103 29 6 2.1968 -1.1963 0.0048 30 1 -0.3633 0.0042 1.0277 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6562 2.1325 0.0004 34 1 4.1172 2.1393 -0.0095 35 1 5.3558 0.0122 -0.0112 36 1 6.3687 -1.7738 -0.0113 37 1 5.9128 -7.3526 0.3707 38 1 5.2827 -6.0449 -0.6638 39 1 5.6079 -8.2154 -1.9029 40 1 6.5715 -6.8763 -2.5728 41 1 7.5919 -8.9794 -0.6096 42 1 7.9213 -8.9572 -2.3585 43 1 13.2947 -7.7608 -0.4992 44 1 9.4002 -5.7912 0.1051 45 1 8.6002 -7.1870 0.8726 46 1 1.6568 -2.1316 0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 104.652814 kcal Electronic energy + Delta-G solvation = -28901.031979 eV Core-core repulsion = 24986.376384 eV Total energy + Delta-G solvation = -3914.655596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67944 -40.03669 -39.37936 -36.93249 -35.35187 -33.41008 -32.96582 -31.90645 -31.43467 -30.68244 -29.94515 -27.59137 -25.58287 -25.20652 -24.54806 -23.27797 -22.24591 -21.81765 -21.23183 -20.09193 -19.01080 -18.00840 -17.03684 -16.70774 -16.45843 -16.30010 -15.94166 -15.55208 -15.22790 -14.70286 -14.49353 -14.25941 -14.10510 -13.95368 -13.69613 -13.60125 -13.05218 -13.01746 -12.89555 -12.76127 -12.55230 -12.41006 -12.19062 -12.07643 -11.81160 -11.58067 -11.43060 -11.00824 -10.90367 -10.46798 -10.23241 -10.01051 -9.78539 -9.72788 -9.63844 -9.41800 -9.13179 -9.04438 -8.89940 -8.56548 -8.01964 -6.06675 -4.07984 0.06024 0.69350 1.39343 1.60611 1.64083 3.11611 3.28723 3.40627 3.44390 3.49732 3.61172 3.89833 4.01881 4.20128 4.40649 4.45902 4.48650 4.62542 4.64372 4.71336 4.77487 5.04123 5.08769 5.10918 5.21682 5.26064 5.34558 5.51370 5.52218 5.56806 5.71331 5.74101 5.80945 5.90548 6.04635 6.07272 6.18530 6.24650 6.33700 6.43882 6.52141 6.59741 6.73132 6.82412 6.93581 7.20888 7.49072 7.63895 7.75884 7.88090 8.42831 8.54884 8.96725 9.54951 11.05243 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002583 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.367474 B =10839.012516 C =11898.426153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.065 4.065 3 C -0.118 4.118 4 C -0.090 4.090 5 C -0.132 4.132 6 C 0.142 3.858 7 N -0.313 5.313 8 C 0.089 3.911 9 C -0.077 4.077 10 C 0.590 3.410 11 O -0.543 6.543 12 N -0.587 5.587 13 C 0.088 3.912 14 C -0.135 4.135 15 C -0.101 4.101 16 C 0.004 3.996 17 H 0.030 0.970 18 C -0.514 4.514 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.879 3.121 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.261 1.261 26 C 0.102 3.898 27 N -0.192 5.192 28 N -0.062 5.062 29 C -0.107 4.107 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.265 0.735 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.819 19.496 1.442 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.153 4.153 6 C 0.050 3.950 7 N -0.092 5.092 8 C -0.064 4.064 9 C -0.215 4.215 10 C 0.375 3.625 11 O -0.420 6.420 12 N -0.318 5.318 13 C -0.036 4.036 14 C -0.174 4.174 15 C -0.139 4.139 16 C -0.015 4.015 17 H 0.049 0.951 18 C -0.552 4.552 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.708 3.292 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.185 1.185 26 C -0.018 4.018 27 N -0.066 5.066 28 N -0.040 5.040 29 C -0.127 4.127 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.224 0.776 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.344 18.967 1.561 31.694 hybrid contribution 1.152 1.557 0.126 1.941 sum -24.192 20.524 1.687 31.770 Atomic orbital electron populations 1.20843 0.90087 1.03445 1.02962 1.19852 0.96718 0.92061 0.97930 1.21235 0.94249 0.97975 1.00197 1.21023 0.94197 0.97425 0.98263 1.20987 1.00788 0.90530 1.02951 1.17606 0.91683 0.81508 1.04197 1.47590 1.05198 1.07272 1.49108 1.23361 0.85427 0.99217 0.98376 1.21702 0.94108 0.90783 1.14867 1.16837 0.85263 0.82550 0.77849 1.90805 1.36575 1.62655 1.51978 1.48237 1.11263 1.05345 1.66911 1.22427 0.88322 0.95209 0.97607 1.21988 0.99116 0.98847 0.97418 1.21457 0.93352 0.97844 1.01232 1.19414 0.94886 0.94197 0.93030 0.95145 1.20960 0.89622 0.94858 1.49786 0.90428 1.25054 0.95629 0.98182 0.94221 1.69890 0.99122 1.35789 1.48617 0.86990 0.76728 0.85900 0.79543 1.19990 1.22384 1.18530 1.22605 0.81754 0.96032 1.01399 1.74523 0.97699 1.24219 1.10123 1.82057 1.17623 0.81998 1.22358 1.20840 0.91177 0.99593 1.01082 0.90546 0.90959 0.90958 0.85045 0.84465 0.84640 0.77597 0.91585 0.86703 0.91587 0.92341 0.92474 0.92296 0.92562 0.90294 0.91131 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.01 36.01 0.36 -0.11 16 2 C -0.06 -0.41 5.88 -104.65 -0.62 -1.02 16 3 C -0.12 -0.63 9.70 -39.55 -0.38 -1.01 16 4 C -0.09 -0.51 10.04 -39.61 -0.40 -0.90 16 5 C -0.13 -0.97 9.47 -39.41 -0.37 -1.35 16 6 C 0.14 1.35 6.70 -83.58 -0.56 0.79 16 7 N -0.31 -3.76 3.82 -10.42 -0.04 -3.80 16 8 C 0.09 1.13 10.61 -16.71 -0.18 0.96 16 9 C -0.08 -1.23 6.69 -83.54 -0.56 -1.79 16 10 C 0.59 11.66 7.67 -12.48 -0.10 11.56 16 11 O -0.54 -12.23 16.30 5.28 0.09 -12.14 16 12 N -0.59 -11.78 2.98 -174.27 -0.52 -12.30 16 13 C 0.09 1.46 6.08 -3.72 -0.02 1.44 16 14 C -0.14 -2.24 6.08 -26.61 -0.16 -2.40 16 15 C -0.10 -2.00 5.11 -26.69 -0.14 -2.14 16 16 C 0.00 0.10 1.83 -91.87 -0.17 -0.07 16 17 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 18 C -0.51 -14.48 9.15 -34.44 -0.32 -14.79 16 19 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 20 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 21 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 22 Si 0.88 23.39 24.32 -169.99 -4.13 19.25 16 23 H -0.27 -7.29 6.93 56.52 0.39 -6.90 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.26 -6.94 6.53 56.52 0.37 -6.57 16 26 C 0.10 2.37 5.10 -3.93 -0.02 2.35 16 27 N -0.19 -2.95 8.80 32.85 0.29 -2.66 16 28 N -0.06 -0.87 13.12 60.35 0.79 -0.08 16 29 C -0.11 -0.89 9.33 -39.41 -0.37 -1.26 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 32 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.81 6.81 -52.49 -0.36 0.45 16 36 H 0.21 2.01 7.13 -52.48 -0.37 1.63 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.81 4.13 -76.53 -0.32 1.50 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.08 2.02 2.31 -51.93 -0.12 1.90 16 45 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.14 1.19 7.73 -52.48 -0.41 0.78 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -34.58 369.62 -7.46 -42.04 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.19 Total: -1.23 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -4.09 Total: -7.73 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 1.30 Total: -45.76 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.13 Total: 19.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.58 -7.46 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.690 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds