Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38304 * 119.96845 * 2 1 4 4 C 1.38254 * 120.13230 * 180.27581 * 3 2 1 5 5 C 1.38144 * 120.06526 * 359.74720 * 4 3 2 6 6 C 1.38803 * 119.93389 * 0.02562 * 5 4 3 7 7 N 1.40227 * 120.06648 * 180.02562 * 6 5 4 8 8 C 1.35068 * 126.61434 * 359.97438 * 7 6 5 9 9 C 1.36617 * 106.79588 * 179.97438 * 8 7 6 10 10 C 1.47517 * 125.76846 * 179.97438 * 9 8 7 11 11 O 1.21601 * 119.99559 * 7.32915 * 10 9 8 12 12 N 1.34773 * 120.00144 * 187.33491 * 10 9 8 13 13 C 1.46918 * 120.63149 * 7.33373 * 12 10 9 14 14 C 1.53190 * 108.77714 * 126.37080 * 13 12 10 15 15 C 1.53040 * 109.31149 * 54.63596 * 14 13 12 16 16 C 1.53040 * 109.53833 * 298.63523 * 15 14 13 17 17 H 1.08997 * 109.50229 * 301.41523 * 16 15 14 18 18 C 1.50704 * 109.49831 * 181.34794 * 16 15 14 19 19 H 1.08003 * 119.99937 * 0.02562 * 18 16 15 20 20 C 1.37879 * 119.99990 * 180.02562 * 18 16 15 21 21 N 1.31506 * 120.00215 * 180.02562 * 20 18 16 22 22 Si 1.86799 * 119.99960 * 0.02562 * 20 18 16 23 23 H 1.48498 * 109.47409 * 89.99970 * 22 20 18 24 24 H 1.48496 * 109.47274 * 210.00062 * 22 20 18 25 25 H 1.48503 * 109.47269 * 329.99720 * 22 20 18 26 26 C 1.46931 * 120.62778 * 187.06033 * 12 10 9 27 27 N 1.34409 * 108.46868 * 359.97438 * 9 8 7 28 28 N 1.28757 * 109.57867 * 359.75089 * 27 9 8 29 29 C 1.38091 * 119.96840 * 179.77091 * 2 1 3 30 30 H 1.09000 * 109.47145 * 270.23245 * 1 2 3 31 31 H 1.09006 * 109.47060 * 30.23216 * 1 2 3 32 32 H 1.08997 * 109.47127 * 150.22967 * 1 2 3 33 33 H 1.08002 * 119.93073 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.96671 * 179.76850 * 4 3 2 35 35 H 1.07996 * 120.03101 * 179.97438 * 5 4 3 36 36 H 1.08003 * 126.60477 * 359.96234 * 8 7 6 37 37 H 1.09005 * 109.58950 * 246.15764 * 13 12 10 38 38 H 1.09004 * 109.58766 * 6.58481 * 13 12 10 39 39 H 1.09004 * 109.50157 * 174.58518 * 14 13 12 40 40 H 1.09004 * 109.49839 * 294.68413 * 14 13 12 41 41 H 1.08998 * 109.45881 * 58.65964 * 15 14 13 42 42 H 1.09005 * 109.46125 * 178.61852 * 15 14 13 43 43 H 0.96998 * 120.00352 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.59060 * 353.41431 * 26 12 10 45 45 H 1.08998 * 109.58438 * 113.84075 * 26 12 10 46 46 H 1.08006 * 120.03328 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5804 1.2021 -0.0058 5 6 4.2759 0.0085 -0.0063 6 6 3.5853 -1.1955 -0.0015 7 7 4.2885 -2.4087 -0.0014 8 6 5.6305 -2.5621 -0.0062 9 6 5.8742 -3.9063 -0.0035 10 6 7.2058 -4.5411 -0.0074 11 8 8.2046 -3.8595 0.1208 12 7 7.3153 -5.8765 -0.1532 13 6 6.1362 -6.6942 -0.4688 14 6 6.4376 -7.5340 -1.7140 15 6 7.7179 -8.3400 -1.4833 16 6 8.8898 -7.3836 -1.2505 17 1 9.0007 -6.7272 -2.1136 18 6 10.1560 -8.1774 -1.0562 19 1 10.1283 -9.2564 -1.0953 20 6 11.3498 -7.5262 -0.8287 21 7 12.4548 -8.2189 -0.6597 22 14 11.3976 -5.6601 -0.7605 23 1 11.1716 -5.2098 0.6364 24 1 12.7239 -5.1815 -1.2263 25 1 10.3353 -5.1053 -1.6374 26 6 8.6172 -6.5413 -0.0055 27 7 4.6958 -4.5527 0.0033 28 7 3.7341 -3.6966 0.0103 29 6 2.1968 -1.1963 0.0048 30 1 -0.3633 0.0042 1.0277 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6562 2.1325 0.0004 34 1 4.1172 2.1393 -0.0095 35 1 5.3558 0.0122 -0.0112 36 1 6.3687 -1.7738 -0.0113 37 1 5.9128 -7.3526 0.3707 38 1 5.2827 -6.0449 -0.6638 39 1 5.6079 -8.2154 -1.9029 40 1 6.5715 -6.8763 -2.5728 41 1 7.5919 -8.9794 -0.6096 42 1 7.9213 -8.9572 -2.3585 43 1 13.2947 -7.7608 -0.4992 44 1 9.4002 -5.7912 0.1051 45 1 8.6002 -7.1870 0.8726 46 1 1.6568 -2.1316 0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = 83.017582 kcal Electronic energy + Delta-G solvation = -28901.970154 eV Core-core repulsion = 24986.376384 eV Total energy + Delta-G solvation = -3915.593770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.71351 -41.12465 -40.38688 -38.56193 -36.21326 -35.26986 -33.74580 -33.43761 -32.56754 -32.16266 -30.93948 -28.02711 -27.24006 -26.81662 -25.51701 -24.35866 -23.59555 -23.02066 -21.95196 -21.49759 -20.42855 -19.15450 -18.83479 -18.05403 -17.47066 -17.35552 -17.04437 -16.58037 -16.21389 -16.11900 -15.96219 -15.50273 -15.18373 -14.97167 -14.88132 -14.80432 -14.57049 -14.27048 -14.11560 -13.80513 -13.55955 -13.53877 -13.31105 -13.07866 -12.99313 -12.65533 -12.47839 -12.31226 -12.20105 -12.11091 -12.09590 -11.61243 -11.58301 -11.42352 -11.06614 -10.81008 -10.79454 -10.76361 -9.92623 -9.68095 -9.52961 -8.37344 -6.39902 -0.71084 0.21079 0.35453 0.66743 0.75453 1.25831 1.31375 1.44769 1.85109 2.02859 2.23807 2.61028 2.88532 2.98823 3.08892 3.51895 3.64135 3.76644 3.89840 3.92429 4.06363 4.13087 4.16755 4.20493 4.21645 4.32970 4.42384 4.46628 4.55206 4.63696 4.74974 4.78042 4.82858 4.85581 4.96250 5.02497 5.14318 5.18399 5.19401 5.24211 5.27559 5.35913 5.37717 5.51035 5.52758 5.61034 5.69404 5.86325 6.26503 6.30262 6.61291 6.68423 6.95566 7.25642 8.78459 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002583 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.367474 B =10839.012516 C =11898.426153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.109 4.109 4 C -0.089 4.089 5 C -0.134 4.134 6 C 0.104 3.896 7 N -0.298 5.298 8 C 0.106 3.894 9 C -0.103 4.103 10 C 0.589 3.411 11 O -0.578 6.578 12 N -0.594 5.594 13 C 0.087 3.913 14 C -0.126 4.126 15 C -0.098 4.098 16 C 0.004 3.996 17 H 0.015 0.985 18 C -0.511 4.511 19 H 0.051 0.949 20 C 0.027 3.973 21 N -0.937 5.937 22 Si 0.936 3.064 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.264 1.264 26 C 0.109 3.891 27 N -0.203 5.203 28 N -0.071 5.071 29 C -0.119 4.119 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.267 0.733 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.898 22.566 1.341 35.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.155 4.155 6 C 0.014 3.986 7 N -0.076 5.076 8 C -0.049 4.049 9 C -0.240 4.240 10 C 0.376 3.624 11 O -0.458 6.458 12 N -0.324 5.324 13 C -0.035 4.035 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.015 4.015 17 H 0.033 0.967 18 C -0.549 4.549 19 H 0.069 0.931 20 C -0.172 4.172 21 N -0.577 5.577 22 Si 0.765 3.235 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.189 1.189 26 C -0.013 4.013 27 N -0.076 5.076 28 N -0.049 5.049 29 C -0.139 4.139 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.166 0.834 36 H 0.251 0.749 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.490 22.041 1.452 36.050 hybrid contribution 1.939 0.733 0.161 2.080 sum -26.551 22.774 1.613 35.017 Atomic orbital electron populations 1.20903 0.88561 1.04215 1.03639 1.20151 0.97901 0.91689 0.97304 1.21668 0.94439 0.98729 0.97857 1.21421 0.94552 0.97817 0.96978 1.21271 1.01639 0.90280 1.02278 1.17988 0.92250 0.81033 1.07363 1.47700 1.05016 1.07562 1.47319 1.23687 0.86142 0.98678 0.96344 1.21201 0.92716 0.91898 1.18229 1.17218 0.86347 0.82142 0.76669 1.90766 1.38199 1.63351 1.53525 1.48239 1.10834 1.06013 1.67291 1.22661 0.87416 0.95339 0.98123 1.21943 0.98426 0.98907 0.97115 1.21393 0.93369 0.97339 1.01425 1.19342 0.94835 0.94507 0.92829 0.96696 1.21261 0.91466 0.94080 1.48134 0.93097 1.25658 0.95572 1.01456 0.94502 1.69985 0.99783 1.37270 1.50638 0.86072 0.76408 0.81916 0.79098 1.20338 1.21943 1.18942 1.22158 0.83160 0.95356 1.00630 1.74401 0.97527 1.24929 1.10766 1.81984 1.17340 0.82810 1.22762 1.20945 0.90949 1.00291 1.01678 0.89841 0.89242 0.91201 0.82102 0.81619 0.83424 0.74926 0.90316 0.85283 0.87788 0.92773 0.92088 0.92313 0.92325 0.92658 0.91223 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 71.24 0.71 0.09 16 2 C -0.07 -0.69 5.88 -19.88 -0.12 -0.81 16 3 C -0.11 -0.74 9.70 22.29 0.22 -0.52 16 4 C -0.09 -0.66 10.04 22.25 0.22 -0.44 16 5 C -0.13 -1.62 9.47 22.38 0.21 -1.40 16 6 C 0.10 1.81 6.70 38.08 0.25 2.06 16 7 N -0.30 -6.75 3.82 -186.89 -0.71 -7.47 16 8 C 0.11 2.54 10.61 83.82 0.89 3.43 16 9 C -0.10 -3.20 6.69 40.82 0.27 -2.92 16 10 C 0.59 23.17 7.67 86.69 0.67 23.83 16 11 O -0.58 -26.18 16.30 -4.03 -0.07 -26.24 16 12 N -0.59 -23.63 2.98 -823.51 -2.45 -26.09 16 13 C 0.09 2.76 6.08 86.36 0.53 3.28 16 14 C -0.13 -3.91 6.08 30.67 0.19 -3.72 16 15 C -0.10 -3.79 5.11 30.62 0.16 -3.63 16 16 C 0.00 0.22 1.83 -11.60 -0.02 0.20 16 17 H 0.01 0.77 7.20 -2.39 -0.02 0.75 16 18 C -0.51 -29.55 9.15 25.60 0.23 -29.32 16 19 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 20 C 0.03 1.62 5.45 84.66 0.46 2.08 16 21 N -0.94 -59.43 13.96 21.45 0.30 -59.14 16 22 Si 0.94 49.98 24.32 68.60 1.67 51.65 16 23 H -0.28 -14.79 6.93 99.48 0.69 -14.10 16 24 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 25 H -0.26 -14.13 6.53 99.48 0.65 -13.48 16 26 C 0.11 5.09 5.10 86.22 0.44 5.53 16 27 N -0.20 -6.03 8.80 -49.98 -0.44 -6.47 16 28 N -0.07 -1.90 13.12 37.02 0.49 -1.41 16 29 C -0.12 -1.81 9.33 22.38 0.21 -1.60 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 0.18 8.09 -2.38 -0.02 0.16 16 32 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 34 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 35 H 0.15 1.33 6.81 -2.91 -0.02 1.31 16 36 H 0.23 4.06 7.13 -2.91 -0.02 4.04 16 37 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.13 3.86 4.13 -34.22 -0.14 3.72 16 39 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 44 H 0.06 2.86 2.31 -2.39 -0.01 2.86 16 45 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 46 H 0.13 2.17 7.73 -2.91 -0.02 2.14 16 Total: -1.00 -77.53 369.62 5.11 -72.43 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.80 Total: 6.60 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.52 Total: -3.87 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -2.82 Total: -100.57 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.07 Total: -26.24 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.67 Total: 51.65 kcal Total: -77.53 5.11 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.447 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds