Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36625 * 126.60408 * 2 1 4 4 C 1.47509 * 125.76521 * 0.02562 * 3 2 1 5 5 O 1.21593 * 120.00422 * 353.91492 * 4 3 2 6 6 N 1.34781 * 119.99903 * 173.91711 * 4 3 2 7 7 C 1.46928 * 120.62913 * 3.86803 * 6 4 3 8 8 C 1.52761 * 109.01177 * 233.58378 * 7 6 4 9 9 C 1.53043 * 109.38350 * 305.59399 * 8 7 6 10 10 C 1.53042 * 109.53789 * 61.23287 * 9 8 7 11 11 H 1.09008 * 109.49320 * 58.59167 * 10 9 8 12 12 C 1.50702 * 109.49383 * 178.68282 * 10 9 8 13 13 H 1.07999 * 120.00111 * 359.84463 * 12 10 9 14 14 C 1.37877 * 119.99710 * 179.83991 * 12 10 9 15 15 N 1.31509 * 120.00291 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99828 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47255 * 90.00155 * 16 14 12 18 18 H 1.48496 * 109.46771 * 210.00224 * 16 14 12 19 19 H 1.48498 * 109.46792 * 329.99916 * 16 14 12 20 20 C 1.46926 * 120.63019 * 184.15204 * 6 4 3 21 21 N 1.34417 * 108.46673 * 180.26743 * 3 2 1 22 22 N 1.28756 * 109.57737 * 359.73543 * 21 3 2 23 23 N 1.35074 * 126.60236 * 179.81678 * 2 1 3 24 24 C 1.40229 * 126.61224 * 0.02562 * 23 2 1 25 25 C 1.38831 * 120.06413 * 324.43496 * 24 23 2 26 26 C 1.38125 * 119.93039 * 179.72292 * 25 24 23 27 27 C 1.38273 * 120.06400 * 0.57546 * 26 25 24 28 28 C 1.38272 * 120.13565 * 359.67745 * 27 26 25 29 29 C 1.38125 * 120.06697 * 0.04692 * 28 27 26 30 30 H 1.08999 * 109.47349 * 270.18172 * 1 2 3 31 31 H 1.09001 * 109.46891 * 30.17913 * 1 2 3 32 32 H 1.08996 * 109.47011 * 150.17512 * 1 2 3 33 33 H 1.09005 * 109.58637 * 353.42236 * 7 6 4 34 34 H 1.09003 * 109.58338 * 113.84466 * 7 6 4 35 35 H 1.08998 * 109.56390 * 185.55317 * 8 7 6 36 36 H 1.08999 * 109.38317 * 65.51819 * 8 7 6 37 37 H 1.09006 * 109.45711 * 301.21858 * 9 8 7 38 38 H 1.08995 * 109.44756 * 181.25357 * 9 8 7 39 39 H 0.97006 * 120.00221 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.58348 * 246.15434 * 20 6 4 41 41 H 1.08996 * 109.58624 * 6.58336 * 20 6 4 42 42 H 1.08002 * 120.03048 * 359.97438 * 25 24 23 43 43 H 1.07993 * 119.96449 * 180.25613 * 26 25 24 44 44 H 1.08005 * 119.93532 * 179.70055 * 27 26 25 45 45 H 1.08005 * 119.97158 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.03752 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3217 1.0968 0.0000 4 6 1.8749 2.5026 0.0005 5 8 0.6928 2.7650 -0.1106 6 7 2.7770 3.4963 0.1242 7 6 4.2152 3.1998 0.1743 8 6 4.8133 3.8461 1.4226 9 6 4.4782 5.3394 1.4316 10 6 2.9594 5.5229 1.4710 11 1 2.5569 5.0347 2.3586 12 6 2.6314 6.9932 1.5125 13 1 3.4266 7.7240 1.5135 14 6 1.3162 7.4053 1.5491 15 7 0.3479 6.5154 1.5482 16 14 0.9096 9.2279 1.5998 17 1 0.7731 9.7434 0.2140 18 1 -0.3669 9.4300 2.3311 19 1 1.9994 9.9589 2.2949 20 6 2.3406 4.8962 0.2176 21 7 3.5990 0.6784 -0.0060 22 7 3.6314 -0.6088 -0.0041 23 7 2.3124 -1.0844 0.0035 24 6 1.9074 -2.4269 0.0073 25 6 0.7706 -2.8085 0.7068 26 6 0.3710 -4.1306 0.7040 27 6 1.1086 -5.0758 0.0151 28 6 2.2443 -4.6996 -0.6782 29 6 2.6458 -3.3780 -0.6838 30 1 -0.3634 0.0033 1.0276 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8915 -0.5111 33 1 4.3646 2.1209 0.2157 34 1 4.7028 3.6045 -0.7126 35 1 5.8955 3.7160 1.4181 36 1 4.3938 3.3737 2.3108 37 1 4.8772 5.8065 0.5311 38 1 4.9234 5.8058 2.3104 39 1 -0.5774 6.8054 1.5744 40 1 2.6722 5.4420 -0.6657 41 1 1.2536 4.9361 0.2877 42 1 0.1970 -2.0715 1.2493 43 1 -0.5156 -4.4273 1.2445 44 1 0.7970 -6.1099 0.0183 45 1 2.8183 -5.4400 -1.2157 46 1 3.5331 -3.0848 -1.2251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 101.044236 kcal Electronic energy + Delta-G solvation = -29376.760231 eV Core-core repulsion = 25461.948155 eV Total energy + Delta-G solvation = -3914.812076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54079 -39.72619 -38.97342 -36.64658 -35.07888 -33.26455 -32.63458 -31.68794 -31.39011 -30.18929 -29.48480 -27.99687 -25.10918 -24.86364 -24.22089 -23.41928 -22.11266 -21.73595 -21.02880 -19.82841 -18.77839 -17.87123 -16.89740 -16.46933 -16.35757 -15.80475 -15.40036 -15.22250 -14.74164 -14.57070 -14.19589 -14.17185 -14.04839 -13.61182 -13.50677 -13.27687 -13.13665 -12.93621 -12.74320 -12.53689 -12.12698 -12.07242 -11.97266 -11.87355 -11.64786 -11.36065 -10.98788 -10.93993 -10.63424 -10.40858 -10.19388 -9.91156 -9.67476 -9.54770 -9.36500 -9.28457 -9.03417 -8.89847 -8.78729 -8.38706 -7.64828 -5.95986 -4.03951 0.28221 0.79446 1.39400 1.83231 1.84569 3.16757 3.33458 3.40573 3.43265 3.66613 3.80120 4.12502 4.22518 4.36345 4.46272 4.54511 4.59869 4.72241 4.77356 4.81942 5.06428 5.11415 5.34336 5.37839 5.42765 5.47680 5.56358 5.76458 5.77847 5.78364 5.87028 5.92694 5.97847 6.04378 6.21549 6.31924 6.46162 6.58799 6.65428 6.78273 6.82578 6.98152 7.07527 7.23118 7.37952 7.68447 7.90061 7.93706 8.05070 8.32805 8.43661 8.84612 9.00427 9.61140 11.09433 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.002624 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.645816 B =10667.257896 C =11582.097056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.122 3.878 3 C -0.080 4.080 4 C 0.590 3.410 5 O -0.535 6.535 6 N -0.584 5.584 7 C 0.070 3.930 8 C -0.130 4.130 9 C -0.112 4.112 10 C 0.040 3.960 11 H 0.028 0.972 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.882 5.882 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.113 3.887 21 N -0.194 5.194 22 N -0.070 5.070 23 N -0.319 5.319 24 C 0.135 3.865 25 C -0.119 4.119 26 C -0.100 4.100 27 C -0.113 4.113 28 C -0.103 4.103 29 C -0.100 4.100 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.123 0.877 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -24.264 -3.954 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.012 4.012 3 C -0.219 4.219 4 C 0.374 3.626 5 O -0.412 6.412 6 N -0.314 5.314 7 C -0.055 4.055 8 C -0.168 4.168 9 C -0.150 4.150 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.519 5.519 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.007 4.007 21 N -0.066 5.066 22 N -0.046 5.046 23 N -0.100 5.100 24 C 0.044 3.956 25 C -0.139 4.139 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.121 4.121 29 C -0.120 4.120 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.141 0.859 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.825 -24.447 -4.020 24.843 hybrid contribution -0.955 1.223 0.101 1.555 sum 0.870 -23.224 -3.919 23.568 Atomic orbital electron populations 1.20888 0.84489 1.05774 1.04716 1.21999 0.96358 0.85455 0.97347 1.21638 0.88223 0.96291 1.15710 1.16746 0.85800 0.81902 0.78166 1.90757 1.15963 1.82776 1.51715 1.48316 1.06107 1.08219 1.68785 1.22602 0.80496 1.04607 0.97752 1.21821 0.99118 0.98035 0.97843 1.21651 0.99773 0.93127 1.00408 1.18971 0.89270 0.95808 0.93844 0.95348 1.21097 0.91938 0.91206 1.51435 0.92351 1.25050 0.96564 0.97533 0.94900 1.69883 0.99595 1.32870 1.49578 0.86593 0.77753 0.85583 0.78074 1.20655 1.21249 1.19971 1.22358 1.04718 0.75069 0.98592 1.74192 1.18898 1.02948 1.10605 1.82081 0.95292 1.04153 1.23086 1.47509 1.07014 1.04714 1.50786 1.17564 0.97119 0.79972 1.00940 1.21234 0.96116 0.97724 0.98872 1.21073 1.00079 0.91715 0.99008 1.21352 0.94980 1.00082 0.96757 1.21112 0.96847 0.95113 0.99057 1.21065 1.00087 0.92533 0.98359 0.88870 0.86261 0.90580 0.85422 0.92551 0.92318 0.92586 0.93241 0.93206 0.92719 0.93751 0.85887 0.84469 0.84576 0.85070 0.84704 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 8.14 36.01 0.29 -0.89 16 2 C 0.12 1.81 6.84 -81.75 -0.56 1.25 16 3 C -0.08 -1.44 6.77 -83.54 -0.57 -2.01 16 4 C 0.59 12.55 7.69 -12.48 -0.10 12.45 16 5 O -0.53 -12.51 14.13 5.28 0.07 -12.44 16 6 N -0.58 -12.71 2.98 -174.27 -0.52 -13.23 16 7 C 0.07 1.30 6.28 -3.93 -0.02 1.27 16 8 C -0.13 -2.39 6.07 -26.83 -0.16 -2.56 16 9 C -0.11 -2.37 5.11 -26.69 -0.14 -2.51 16 10 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 11 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 12 C -0.52 -14.27 8.56 -34.44 -0.29 -14.56 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.88 -25.67 11.39 55.43 0.63 -25.04 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.11 2.81 5.39 -3.71 -0.02 2.79 16 21 N -0.19 -3.35 8.63 32.85 0.28 -3.06 16 22 N -0.07 -1.09 13.57 60.35 0.82 -0.27 16 23 N -0.32 -4.36 3.75 -6.72 -0.03 -4.39 16 24 C 0.14 1.43 6.31 -83.58 -0.53 0.91 16 25 C -0.12 -1.00 8.37 -39.40 -0.33 -1.33 16 26 C -0.10 -0.61 10.04 -39.61 -0.40 -1.01 16 27 C -0.11 -0.62 10.04 -39.56 -0.40 -1.02 16 28 C -0.10 -0.65 10.04 -39.61 -0.40 -1.04 16 29 C -0.10 -0.89 9.79 -39.40 -0.39 -1.28 16 30 H 0.09 0.97 7.81 -51.93 -0.41 0.57 16 31 H 0.12 1.66 6.33 -51.93 -0.33 1.34 16 32 H 0.08 0.68 7.01 -51.93 -0.36 0.31 16 33 H 0.13 2.28 3.62 -130.49 -0.47 1.81 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.12 3.49 5.14 -51.93 -0.27 3.23 16 42 H 0.14 1.06 6.25 -52.49 -0.33 0.73 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 45 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 46 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -32.44 369.74 -8.85 -41.29 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.36 Total: 2.25 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.30 Total: -7.07 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 1.19 Total: -45.99 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.44 -8.85 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.330 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds