Wall clock time and date at job start Sat Apr 11 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36625 * 126.60408 * 2 1 4 4 C 1.47509 * 125.76521 * 0.02562 * 3 2 1 5 5 O 1.21593 * 120.00422 * 353.91492 * 4 3 2 6 6 N 1.34781 * 119.99903 * 173.91711 * 4 3 2 7 7 C 1.46928 * 120.62913 * 3.86803 * 6 4 3 8 8 C 1.52761 * 109.01177 * 233.58378 * 7 6 4 9 9 C 1.53043 * 109.38350 * 305.59399 * 8 7 6 10 10 C 1.53042 * 109.53789 * 61.23287 * 9 8 7 11 11 H 1.09008 * 109.49320 * 58.59167 * 10 9 8 12 12 C 1.50702 * 109.49383 * 178.68282 * 10 9 8 13 13 H 1.07999 * 120.00111 * 359.84463 * 12 10 9 14 14 C 1.37877 * 119.99710 * 179.83991 * 12 10 9 15 15 N 1.31509 * 120.00291 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99828 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47255 * 90.00155 * 16 14 12 18 18 H 1.48496 * 109.46771 * 210.00224 * 16 14 12 19 19 H 1.48498 * 109.46792 * 329.99916 * 16 14 12 20 20 C 1.46926 * 120.63019 * 184.15204 * 6 4 3 21 21 N 1.34417 * 108.46673 * 180.26743 * 3 2 1 22 22 N 1.28756 * 109.57737 * 359.73543 * 21 3 2 23 23 N 1.35074 * 126.60236 * 179.81678 * 2 1 3 24 24 C 1.40229 * 126.61224 * 0.02562 * 23 2 1 25 25 C 1.38831 * 120.06413 * 324.43496 * 24 23 2 26 26 C 1.38125 * 119.93039 * 179.72292 * 25 24 23 27 27 C 1.38273 * 120.06400 * 0.57546 * 26 25 24 28 28 C 1.38272 * 120.13565 * 359.67745 * 27 26 25 29 29 C 1.38125 * 120.06697 * 0.04692 * 28 27 26 30 30 H 1.08999 * 109.47349 * 270.18172 * 1 2 3 31 31 H 1.09001 * 109.46891 * 30.17913 * 1 2 3 32 32 H 1.08996 * 109.47011 * 150.17512 * 1 2 3 33 33 H 1.09005 * 109.58637 * 353.42236 * 7 6 4 34 34 H 1.09003 * 109.58338 * 113.84466 * 7 6 4 35 35 H 1.08998 * 109.56390 * 185.55317 * 8 7 6 36 36 H 1.08999 * 109.38317 * 65.51819 * 8 7 6 37 37 H 1.09006 * 109.45711 * 301.21858 * 9 8 7 38 38 H 1.08995 * 109.44756 * 181.25357 * 9 8 7 39 39 H 0.97006 * 120.00221 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.58348 * 246.15434 * 20 6 4 41 41 H 1.08996 * 109.58624 * 6.58336 * 20 6 4 42 42 H 1.08002 * 120.03048 * 359.97438 * 25 24 23 43 43 H 1.07993 * 119.96449 * 180.25613 * 26 25 24 44 44 H 1.08005 * 119.93532 * 179.70055 * 27 26 25 45 45 H 1.08005 * 119.97158 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.03752 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3217 1.0968 0.0000 4 6 1.8749 2.5026 0.0005 5 8 0.6928 2.7650 -0.1106 6 7 2.7770 3.4963 0.1242 7 6 4.2152 3.1998 0.1743 8 6 4.8133 3.8461 1.4226 9 6 4.4782 5.3394 1.4316 10 6 2.9594 5.5229 1.4710 11 1 2.5569 5.0347 2.3586 12 6 2.6314 6.9932 1.5125 13 1 3.4266 7.7240 1.5135 14 6 1.3162 7.4053 1.5491 15 7 0.3479 6.5154 1.5482 16 14 0.9096 9.2279 1.5998 17 1 0.7731 9.7434 0.2140 18 1 -0.3669 9.4300 2.3311 19 1 1.9994 9.9589 2.2949 20 6 2.3406 4.8962 0.2176 21 7 3.5990 0.6784 -0.0060 22 7 3.6314 -0.6088 -0.0041 23 7 2.3124 -1.0844 0.0035 24 6 1.9074 -2.4269 0.0073 25 6 0.7706 -2.8085 0.7068 26 6 0.3710 -4.1306 0.7040 27 6 1.1086 -5.0758 0.0151 28 6 2.2443 -4.6996 -0.6782 29 6 2.6458 -3.3780 -0.6838 30 1 -0.3634 0.0033 1.0276 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8915 -0.5111 33 1 4.3646 2.1209 0.2157 34 1 4.7028 3.6045 -0.7126 35 1 5.8955 3.7160 1.4181 36 1 4.3938 3.3737 2.3108 37 1 4.8772 5.8065 0.5311 38 1 4.9234 5.8058 2.3104 39 1 -0.5774 6.8054 1.5744 40 1 2.6722 5.4420 -0.6657 41 1 1.2536 4.9361 0.2877 42 1 0.1970 -2.0715 1.2493 43 1 -0.5156 -4.4273 1.2445 44 1 0.7970 -6.1099 0.0183 45 1 2.8183 -5.4400 -1.2157 46 1 3.5331 -3.0848 -1.2251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597913046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:14 Heat of formation + Delta-G solvation = 82.267890 kcal Electronic energy + Delta-G solvation = -29377.574434 eV Core-core repulsion = 25461.948155 eV Total energy + Delta-G solvation = -3915.626279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.72282 -40.87891 -40.13831 -38.39008 -36.12909 -35.18165 -33.71097 -33.45642 -32.00446 -31.66737 -30.69964 -29.18309 -27.06189 -26.46258 -25.18745 -24.33152 -23.43649 -23.21452 -22.01398 -21.38270 -20.24879 -19.16337 -18.38315 -17.62375 -17.50790 -17.14841 -17.02795 -16.51257 -16.09673 -15.79820 -15.62447 -15.23906 -15.15354 -14.88008 -14.65648 -14.51962 -14.39273 -14.34581 -14.08882 -13.83265 -13.77754 -13.51404 -13.21284 -12.86720 -12.85510 -12.62102 -12.44930 -12.38140 -12.27013 -12.15521 -11.83940 -11.68998 -11.35078 -11.18088 -10.96521 -10.60495 -10.48461 -10.44220 -10.07937 -9.72058 -9.40885 -8.09266 -6.25941 -0.57156 0.26420 0.42507 0.53238 0.81533 1.42579 1.43055 1.53946 2.05020 2.21748 2.43928 2.62176 2.95400 3.18078 3.28670 3.49071 3.54718 3.80371 3.94432 4.00766 4.17600 4.19670 4.27988 4.33866 4.38367 4.42919 4.47609 4.48425 4.60690 4.62061 4.78251 4.85390 4.94632 4.98619 5.06422 5.15169 5.23011 5.25483 5.28033 5.34427 5.38200 5.44846 5.48974 5.57425 5.66111 5.88421 5.90068 5.98073 6.33393 6.51793 6.73329 6.85055 7.17966 7.43488 8.94833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.002624 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.645816 B =10667.257896 C =11582.097056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.133 3.867 3 C -0.110 4.110 4 C 0.585 3.415 5 O -0.567 6.567 6 N -0.593 5.593 7 C 0.068 3.932 8 C -0.122 4.122 9 C -0.105 4.105 10 C 0.040 3.960 11 H -0.012 1.012 12 C -0.536 4.536 13 H 0.062 0.938 14 C 0.011 3.989 15 N -0.913 5.913 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.127 3.873 21 N -0.206 5.206 22 N -0.076 5.076 23 N -0.303 5.303 24 C 0.092 3.908 25 C -0.124 4.124 26 C -0.097 4.097 27 C -0.099 4.099 28 C -0.101 4.101 29 C -0.111 4.111 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.261 0.739 40 H 0.038 0.962 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.161 0.839 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -27.102 -4.075 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.003 4.003 3 C -0.249 4.249 4 C 0.372 3.628 5 O -0.447 6.447 6 N -0.323 5.323 7 C -0.055 4.055 8 C -0.160 4.160 9 C -0.143 4.143 10 C 0.020 3.980 11 H 0.006 0.994 12 C -0.574 4.574 13 H 0.080 0.920 14 C -0.189 4.189 15 N -0.552 5.552 16 Si 0.785 3.215 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.189 1.189 20 C 0.005 3.995 21 N -0.078 5.078 22 N -0.053 5.053 23 N -0.083 5.083 24 C 0.002 3.998 25 C -0.144 4.144 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.131 4.131 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.158 0.842 43 H 0.183 0.817 44 H 0.183 0.817 45 H 0.179 0.821 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.197 -27.326 -4.142 27.725 hybrid contribution -1.115 1.827 0.141 2.145 sum 1.081 -25.499 -4.002 25.834 Atomic orbital electron populations 1.20955 0.82535 1.06171 1.05738 1.22285 0.97415 0.84997 0.95590 1.21168 0.89444 0.95091 1.19191 1.17152 0.85323 0.83222 0.77136 1.90724 1.17240 1.83696 1.53006 1.48319 1.07691 1.07083 1.69173 1.22830 0.78589 1.05697 0.98391 1.21779 1.01409 0.95609 0.97180 1.21544 0.96408 0.95436 1.00912 1.18898 0.92260 0.94616 0.92188 0.99400 1.21473 0.92287 0.92388 1.51287 0.92019 1.25886 0.96468 1.02011 0.94490 1.70065 0.99762 1.34939 1.50425 0.85534 0.77571 0.80162 0.78263 1.20012 1.21090 1.18941 1.21832 1.02407 0.77245 0.98022 1.74021 1.18704 1.03738 1.11365 1.81965 0.96699 1.03375 1.23285 1.47617 1.05919 1.05806 1.48931 1.18012 0.99204 0.78564 1.04011 1.21417 0.95313 0.99087 0.98600 1.21468 1.00843 0.90595 0.98615 1.21826 0.93722 1.01613 0.94592 1.21461 0.97304 0.94276 0.98849 1.21184 0.99903 0.93521 0.98500 0.87374 0.88601 0.87268 0.84127 0.91308 0.88416 0.93763 0.92469 0.92803 0.92953 0.94376 0.89607 0.84188 0.81699 0.81670 0.82097 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 8.14 71.24 0.58 -1.67 16 2 C 0.13 3.98 6.84 41.68 0.29 4.26 16 3 C -0.11 -4.09 6.77 40.82 0.28 -3.82 16 4 C 0.59 26.30 7.69 86.69 0.67 26.96 16 5 O -0.57 -28.33 14.13 -4.01 -0.06 -28.39 16 6 N -0.59 -26.98 2.98 -823.51 -2.45 -29.43 16 7 C 0.07 2.54 6.28 86.22 0.54 3.08 16 8 C -0.12 -4.42 6.07 30.53 0.19 -4.24 16 9 C -0.11 -4.49 5.11 30.62 0.16 -4.33 16 10 C 0.04 2.10 2.25 -11.46 -0.03 2.08 16 11 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 12 C -0.54 -30.34 8.56 25.60 0.22 -30.12 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 14 C 0.01 0.63 5.30 84.66 0.45 1.08 16 15 N -0.91 -55.59 11.39 21.45 0.24 -55.35 16 16 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.13 6.68 5.39 86.36 0.47 7.14 16 21 N -0.21 -7.21 8.63 -49.98 -0.43 -7.65 16 22 N -0.08 -2.40 13.57 37.02 0.50 -1.90 16 23 N -0.30 -8.17 3.75 -175.16 -0.66 -8.83 16 24 C 0.09 1.82 6.31 38.08 0.24 2.06 16 25 C -0.12 -1.78 8.37 22.39 0.19 -1.60 16 26 C -0.10 -0.80 10.04 22.25 0.22 -0.57 16 27 C -0.10 -0.63 10.04 22.29 0.22 -0.41 16 28 C -0.10 -0.92 10.04 22.25 0.22 -0.70 16 29 C -0.11 -1.79 9.79 22.38 0.22 -1.57 16 30 H 0.11 2.22 7.81 -2.39 -0.02 2.20 16 31 H 0.10 2.80 6.33 -2.39 -0.02 2.78 16 32 H 0.11 1.79 7.01 -2.39 -0.02 1.77 16 33 H 0.14 5.04 3.62 -104.04 -0.38 4.67 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 40 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 5.21 5.14 -2.39 -0.01 5.19 16 42 H 0.14 1.87 6.25 -2.91 -0.02 1.85 16 43 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 44 H 0.17 0.00 8.06 -2.91 -0.02 -0.03 16 45 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -75.43 369.74 4.93 -70.50 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.64 Total: 16.61 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.12 Total: -2.36 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -2.79 Total: -103.15 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.06 Total: -28.39 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.43 4.93 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.765 kcal (2) G-P(sol) polarization free energy of solvation -75.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds